Wall clock time and date at job start Wed Apr 1 2020 00:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42897 * 109.46859 * 119.99792 * 2 1 3 5 5 C 1.42899 * 114.00297 * 89.99697 * 4 2 1 6 6 C 1.50694 * 109.47605 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99966 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46912 * 184.97960 * 9 8 6 11 11 H 1.08998 * 109.45987 * 186.08978 * 10 9 8 12 12 C 1.53034 * 109.46496 * 66.12448 * 10 9 8 13 13 C 1.53123 * 109.27909 * 180.80553 * 12 10 9 14 14 C 1.53109 * 109.16093 * 57.65338 * 13 12 10 15 15 C 1.53040 * 109.27991 * 302.34323 * 14 13 12 16 16 N 1.46844 * 109.46249 * 306.06588 * 10 9 8 17 17 C 1.46897 * 111.00375 * 305.86132 * 16 10 9 18 18 C 1.50695 * 109.47222 * 164.00593 * 17 16 10 19 19 O 1.21297 * 120.00247 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00083 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00205 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00109 * 180.27705 * 21 20 18 24 24 N 1.31418 * 120.00100 * 359.72252 * 23 21 20 25 25 Si 1.86804 * 120.00519 * 179.72751 * 23 21 20 26 26 H 1.48500 * 109.46477 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46922 * 119.99681 * 25 23 21 28 28 H 1.48497 * 109.47223 * 240.00030 * 25 23 21 29 29 H 1.09003 * 109.47316 * 300.00593 * 1 2 3 30 30 H 1.09005 * 109.47114 * 60.00064 * 1 2 3 31 31 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46907 * 239.99303 * 2 1 3 33 33 H 1.09000 * 109.46731 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46656 * 299.99928 * 3 2 1 35 35 H 1.09001 * 109.46990 * 59.99745 * 3 2 1 36 36 H 1.09000 * 109.46618 * 59.99885 * 5 4 2 37 37 H 1.09005 * 109.47463 * 300.00492 * 5 4 2 38 38 H 0.96995 * 120.00148 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47293 * 64.97585 * 9 8 6 40 40 H 1.08998 * 109.46977 * 304.97426 * 9 8 6 41 41 H 1.09004 * 109.50489 * 300.74567 * 12 10 9 42 42 H 1.09003 * 109.50520 * 60.81902 * 12 10 9 43 43 H 1.08997 * 109.51666 * 177.56052 * 13 12 10 44 44 H 1.09006 * 109.51845 * 297.68059 * 13 12 10 45 45 H 1.09002 * 109.50540 * 62.28678 * 14 13 12 46 46 H 1.09002 * 109.50422 * 182.37110 * 14 13 12 47 47 H 1.08994 * 109.46618 * 299.16861 * 15 14 13 48 48 H 1.08997 * 109.46394 * 179.19755 * 15 14 13 49 49 H 1.09003 * 109.47446 * 44.00308 * 17 16 10 50 50 H 1.09005 * 109.46816 * 284.00195 * 17 16 10 51 51 H 0.97000 * 119.99563 * 0.02562 * 20 18 17 52 52 H 0.96991 * 120.00403 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 -2.0782 0.9888 6 6 2.7012 -2.6832 2.2747 7 8 2.8751 -1.9808 3.2481 8 7 2.9564 -4.0048 2.3432 9 6 3.4432 -4.5931 3.5935 10 6 3.7691 -6.0709 3.3688 11 1 4.0275 -6.5346 4.3208 12 6 4.9521 -6.1915 2.4055 13 6 5.2618 -7.6722 2.1679 14 6 4.0123 -8.3648 1.6170 15 6 2.8566 -8.1813 2.6033 16 7 2.5989 -6.7485 2.7962 17 6 1.4075 -6.5353 3.6287 18 6 0.1736 -6.8915 2.8403 19 8 0.2765 -7.2840 1.6972 20 7 -1.0444 -6.7741 3.4054 21 6 -2.1670 -7.0977 2.6881 22 1 -2.0754 -7.4472 1.6703 23 6 -3.4230 -6.9711 3.2687 24 7 -3.5345 -6.5464 4.5073 25 14 -4.9531 -7.4048 2.2888 26 1 -4.5592 -7.8541 0.9293 27 1 -5.6892 -8.4954 2.9773 28 1 -5.8271 -6.2091 2.1807 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9318 -2.2467 0.1988 37 1 1.2536 -2.5434 0.7126 38 1 2.8170 -4.5666 1.5649 39 1 2.6744 -4.5031 4.3609 40 1 4.3420 -4.0678 3.9163 41 1 4.6996 -5.7159 1.4577 42 1 5.8246 -5.7013 2.8374 43 1 6.0757 -7.7631 1.4487 44 1 5.5532 -8.1388 3.1089 45 1 3.7450 -7.9234 0.6569 46 1 4.2137 -9.4279 1.4855 47 1 3.1191 -8.6350 3.5589 48 1 1.9616 -8.6612 2.2073 49 1 1.3569 -5.4888 3.9295 50 1 1.4665 -7.1659 4.5158 51 1 -1.1267 -6.4599 4.3194 52 1 -4.4112 -6.4584 4.9128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661852103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:28 Heat of formation + Delta-G solvation = -145.689401 kcal Electronic energy + Delta-G solvation = -31290.949994 eV Core-core repulsion = 27096.244258 eV Total energy + Delta-G solvation = -4194.705736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29026 -40.44122 -39.39138 -38.84390 -35.98059 -35.74586 -34.33718 -33.74024 -33.20509 -32.27962 -29.34411 -28.90601 -28.08895 -26.83753 -26.25435 -24.10791 -22.45011 -22.24817 -21.80559 -20.97348 -20.34680 -19.84183 -18.29612 -18.06391 -17.81951 -17.17433 -16.86022 -16.63793 -16.43525 -16.31907 -15.73226 -15.65647 -15.43786 -15.19978 -15.02244 -14.89202 -14.59740 -14.39466 -13.95204 -13.87885 -13.75442 -13.56289 -13.43750 -13.16308 -13.06390 -13.03630 -12.90776 -12.80706 -12.66299 -12.39042 -12.36569 -12.12929 -12.09658 -11.66267 -11.56833 -11.52000 -11.25786 -11.19448 -10.87256 -10.66729 -10.25340 -10.02624 -9.98114 -9.21685 -8.45174 -5.93631 1.36173 1.40978 1.54947 1.57550 1.87509 2.08208 2.27790 2.68569 3.05610 3.21757 3.38552 3.68373 3.77903 3.83015 4.00432 4.02654 4.09789 4.15689 4.18612 4.26176 4.28199 4.30653 4.36854 4.40919 4.44329 4.49302 4.62951 4.66733 4.72053 4.76156 4.82956 4.87834 4.94066 4.94772 5.00415 5.07252 5.13315 5.27065 5.28689 5.32119 5.36366 5.41854 5.43995 5.54360 5.91137 6.09878 6.14580 6.23353 6.57984 6.61752 7.14843 7.23233 7.58987 8.14059 8.72682 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006245 B = 0.004113 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4482.393482 B = 6805.988434 C =10310.604753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 C -0.146 4.146 4 O -0.389 6.389 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.125 3.875 10 C 0.076 3.924 11 H 0.069 0.931 12 C -0.105 4.105 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.060 3.940 16 N -0.516 5.516 17 C 0.051 3.949 18 C 0.448 3.552 19 O -0.606 6.606 20 N -0.580 5.580 21 C -0.326 4.326 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 5.803 -6.774 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.309 6.309 5 C -0.035 4.035 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.356 5.356 9 C 0.001 3.999 10 C -0.032 4.032 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.068 4.068 16 N -0.242 5.242 17 C -0.080 4.080 18 C 0.235 3.765 19 O -0.491 6.491 20 N -0.217 5.217 21 C -0.456 4.456 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.566 5.566 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.272 6.356 -7.016 19.696 hybrid contribution -1.447 -0.854 0.704 1.821 sum 15.825 5.502 -6.312 17.904 Atomic orbital electron populations 1.22335 0.95918 1.02177 1.03074 1.22426 0.93882 0.94625 0.87646 1.21864 1.01774 0.93512 1.03120 1.88015 1.86948 1.18499 1.37408 1.22303 1.02419 0.83513 0.95282 1.20702 0.77203 0.82499 0.90016 1.90681 1.53596 1.61934 1.39301 1.45732 1.66616 1.07306 1.15990 1.21508 0.99601 0.92687 0.86113 1.22026 0.90963 0.91935 0.98300 0.91323 1.21619 0.95896 0.97433 0.99316 1.21555 0.97055 0.94794 1.01652 1.21516 0.93895 1.00878 0.98358 1.22083 0.99242 0.87055 0.98391 1.61430 1.01761 1.12971 1.48051 1.21792 0.89352 1.02686 0.94203 1.20637 0.84814 0.82858 0.88162 1.90473 1.86832 1.51807 1.19987 1.41980 1.05045 1.59337 1.15344 1.19682 0.84851 1.42688 0.98376 0.90030 1.26029 1.01610 0.96816 0.97021 1.69693 1.26143 1.47034 1.13711 0.84895 0.77347 0.78119 0.78146 1.19463 1.19765 1.19918 0.93098 0.89259 0.93333 0.89920 0.91929 0.88741 0.92980 0.87103 0.89845 0.74648 0.92861 0.89641 0.91346 0.89394 0.90138 0.91457 0.92227 0.90804 0.94762 0.92840 0.88310 0.91989 0.77504 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 9.53 71.98 0.69 -2.92 16 2 C 0.07 1.43 3.34 30.59 0.10 1.53 16 3 C -0.15 -2.44 9.56 71.98 0.69 -1.75 16 4 O -0.39 -10.97 9.52 -129.95 -1.24 -12.21 16 5 C 0.04 1.09 6.23 71.23 0.44 1.53 16 6 C 0.51 15.25 7.91 87.65 0.69 15.94 16 7 O -0.58 -22.19 16.50 15.99 0.26 -21.93 16 8 N -0.70 -17.85 5.08 -463.06 -2.35 -20.20 16 9 C 0.12 2.96 4.58 86.38 0.40 3.35 16 10 C 0.08 1.59 2.11 44.94 0.09 1.69 16 11 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.10 -1.73 5.27 30.65 0.16 -1.57 16 13 C -0.11 -1.78 6.00 30.67 0.18 -1.60 16 14 C -0.11 -2.34 6.09 30.64 0.19 -2.16 16 15 C 0.06 1.69 5.11 86.33 0.44 2.13 16 16 N -0.52 -14.62 3.44 -875.66 -3.01 -17.63 16 17 C 0.05 1.73 5.26 85.56 0.45 2.18 16 18 C 0.45 20.69 7.47 87.65 0.65 21.35 16 19 O -0.61 -31.53 14.41 -3.08 -0.04 -31.58 16 20 N -0.58 -29.73 5.29 -306.98 -1.62 -31.36 16 21 C -0.33 -18.41 9.68 84.04 0.81 -17.59 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 24 N -0.92 -50.79 13.05 21.66 0.28 -50.50 16 25 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 32 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.90 8.08 -2.39 -0.02 1.88 16 37 H 0.08 2.01 7.87 -2.38 -0.02 1.99 16 38 H 0.42 10.12 7.45 -92.71 -0.69 9.43 16 39 H 0.05 1.44 6.36 -2.39 -0.02 1.43 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.20 7.36 -2.39 -0.02 1.19 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 1.97 6.34 -2.39 -0.02 1.95 16 49 H 0.10 3.26 5.52 -2.39 -0.01 3.25 16 50 H 0.06 1.95 8.06 -2.38 -0.02 1.93 16 51 H 0.39 19.64 7.90 -92.71 -0.73 18.91 16 52 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -73.25 413.68 0.27 -72.98 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.50 Total: 45.55 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 6.46 Total: 21.74 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -6.70 Total: -119.69 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -1.02 Total: -65.71 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.25 0.27 -72.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661852103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.707 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds