Wall clock time and date at job start Wed Apr 1 2020 00:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 O 1.42895 * 109.47315 * 120.00785 * 2 1 3 5 5 C 1.42892 * 114.00405 * 90.00275 * 4 2 1 6 6 C 1.53000 * 109.47464 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47258 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00187 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00171 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47206 * 185.05022 * 10 9 7 12 12 H 1.09001 * 110.36758 * 302.94061 * 11 10 9 13 13 C 1.54384 * 110.41158 * 65.28636 * 11 10 9 14 14 C 1.54260 * 105.06138 * 142.63385 * 13 11 10 15 15 C 1.54382 * 105.06108 * 359.97438 * 14 13 11 16 16 N 1.48564 * 104.70019 * 336.09028 * 15 14 13 17 17 C 1.46904 * 111.00044 * 159.09284 * 16 15 14 18 18 C 1.50704 * 109.46420 * 75.88964 * 17 16 15 19 19 O 1.21284 * 120.00322 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99612 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00103 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99772 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00168 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99872 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00004 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47326 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47065 * 120.00376 * 25 23 21 28 28 H 1.48506 * 109.47216 * 239.99767 * 25 23 21 29 29 H 1.09000 * 109.47103 * 299.99440 * 1 2 3 30 30 H 1.08997 * 109.47468 * 59.99393 * 1 2 3 31 31 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46598 * 240.00669 * 2 1 3 33 33 H 1.09000 * 109.47004 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47572 * 300.00543 * 3 2 1 35 35 H 1.09002 * 109.46965 * 60.00894 * 3 2 1 36 36 H 1.09001 * 109.47450 * 59.99652 * 5 4 2 37 37 H 1.09009 * 109.46788 * 299.99880 * 5 4 2 38 38 H 1.09001 * 109.46923 * 59.99511 * 6 5 4 39 39 H 1.09000 * 109.46944 * 299.99873 * 6 5 4 40 40 H 0.96997 * 119.99570 * 0.02562 * 9 7 6 41 41 H 1.09008 * 109.47041 * 65.05547 * 10 9 7 42 42 H 1.08995 * 109.47850 * 305.05541 * 10 9 7 43 43 H 1.09004 * 110.32028 * 23.73452 * 13 11 10 44 44 H 1.09001 * 110.32211 * 261.53157 * 13 11 10 45 45 H 1.09003 * 110.31864 * 241.10892 * 14 13 11 46 46 H 1.08992 * 110.32364 * 118.89579 * 14 13 11 47 47 H 1.09004 * 110.40590 * 94.92457 * 15 14 13 48 48 H 1.08999 * 110.41405 * 217.25130 * 15 14 13 49 49 H 1.08993 * 109.46975 * 195.88751 * 17 16 15 50 50 H 1.08994 * 109.47016 * 315.89555 * 17 16 15 51 51 H 0.97003 * 119.99960 * 359.97438 * 20 18 17 52 52 H 0.97002 * 120.00009 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.2002 -2.0782 0.9884 6 6 2.7093 -2.6926 2.2938 7 6 2.9131 -4.1739 2.1060 8 8 2.6751 -4.6875 1.0334 9 7 3.3608 -4.9277 3.1296 10 6 3.5584 -6.3678 2.9471 11 6 3.9468 -7.0027 4.2838 12 1 4.8417 -6.5264 4.6843 13 6 2.7818 -6.8926 5.2909 14 6 2.8112 -8.2153 6.0840 15 6 3.9910 -9.0137 5.4890 16 7 4.1637 -8.4664 4.1187 17 6 5.5112 -8.7472 3.6056 18 6 5.6005 -10.1943 3.1943 19 8 4.6364 -10.9200 3.3162 20 7 6.7514 -10.6818 2.6901 21 6 6.8325 -11.9981 2.3154 22 1 5.9743 -12.6445 2.4247 23 6 8.0188 -12.5005 1.7951 24 7 9.0633 -11.7141 1.6625 25 14 8.1295 -14.2941 1.2853 26 1 6.8263 -14.9609 1.5344 27 1 8.4599 -14.3784 -0.1601 28 1 9.1905 -14.9688 2.0756 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.9321 -2.2466 0.1983 37 1 1.2538 -2.5434 0.7122 38 1 1.9777 -2.5242 3.0841 39 1 3.6556 -2.2274 2.5696 40 1 3.5515 -4.5168 3.9873 41 1 4.3532 -6.5362 2.2203 42 1 2.6342 -6.8185 2.5856 43 1 1.8338 -6.7885 4.7631 44 1 2.9385 -6.0464 5.9599 45 1 1.8776 -8.7606 5.9455 46 1 2.9823 -8.0185 7.1423 47 1 4.8938 -8.8540 6.0787 48 1 3.7485 -10.0756 5.4465 49 1 5.7114 -8.1114 2.7433 50 1 6.2461 -8.5450 4.3847 51 1 7.5221 -10.1011 2.5915 52 1 9.8914 -12.0647 1.2989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663470807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:54 Heat of formation + Delta-G solvation = -126.880728 kcal Electronic energy + Delta-G solvation = -29397.673444 eV Core-core repulsion = 25203.783313 eV Total energy + Delta-G solvation = -4193.890131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14499 -39.21995 -38.55496 -37.60075 -34.86555 -33.88295 -33.69265 -32.03668 -31.41047 -31.11357 -29.67900 -27.63382 -26.75876 -25.49554 -24.20834 -23.39768 -21.71238 -21.23184 -20.44985 -20.16076 -19.15600 -17.86193 -17.71508 -16.65453 -16.53799 -16.24604 -15.84582 -15.72708 -15.27466 -15.07683 -14.82003 -14.47494 -14.40272 -14.14948 -13.79835 -13.75636 -13.62517 -13.11803 -13.04328 -12.82583 -12.66263 -12.61748 -12.29270 -12.13708 -12.01676 -11.81051 -11.73083 -11.51234 -11.46276 -11.19126 -11.16216 -11.04243 -10.97000 -10.89653 -10.48446 -10.32413 -10.20227 -10.07703 -9.90247 -9.48226 -9.19971 -8.55273 -8.04743 -7.93005 -6.39440 -3.80019 2.45160 2.70100 3.18024 3.28413 3.35700 3.47501 3.92565 4.04591 4.26361 4.41511 4.50241 4.54218 4.59848 4.63559 4.72257 4.79020 4.88443 4.91554 5.10116 5.16324 5.19277 5.19643 5.24264 5.27225 5.29181 5.38969 5.43464 5.44842 5.49423 5.54551 5.62686 5.69328 5.75955 5.77143 5.82453 5.83801 5.86927 5.98205 6.03018 6.18538 6.24054 6.31165 6.38335 6.88101 7.04993 7.16788 7.28271 7.57722 8.02620 8.08853 8.64453 9.20934 9.57124 10.09187 10.78541 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001808 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.556511 B =15484.979444 C =16951.112789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.538 6.538 9 N -0.726 5.726 10 C 0.132 3.868 11 C 0.047 3.953 12 H 0.056 0.944 13 C -0.118 4.118 14 C -0.123 4.123 15 C 0.039 3.961 16 N -0.474 5.474 17 C 0.032 3.968 18 C 0.447 3.553 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.052 0.948 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.647 24.966 4.748 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.179 4.179 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.063 4.063 12 H 0.074 0.926 13 C -0.156 4.156 14 C -0.161 4.161 15 C -0.089 4.089 16 N -0.199 5.199 17 C -0.099 4.099 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.070 0.930 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.613 23.871 3.755 27.258 hybrid contribution 1.456 -0.147 0.395 1.516 sum -11.157 23.724 4.151 26.543 Atomic orbital electron populations 1.22307 0.95965 1.02536 1.02551 1.22075 0.93676 0.93695 0.88147 1.21867 1.01845 0.94468 1.02503 1.87832 1.86759 1.20107 1.36003 1.22149 1.00602 0.80894 0.96355 1.21461 1.04514 0.91919 0.99959 1.20364 0.76823 0.88628 0.84032 1.90758 1.50398 1.74446 1.25849 1.45907 1.68004 1.09252 1.14676 1.21254 1.02868 0.78375 0.96647 1.22900 0.97890 0.90872 0.94588 0.92600 1.22344 0.98470 0.97732 0.97026 1.22296 0.99559 0.95663 0.98626 1.23139 0.96648 1.01468 0.87600 1.65038 1.26542 1.06021 1.22264 1.22110 0.89602 0.97870 1.00348 1.19650 0.84390 0.88397 0.84398 1.90514 1.36861 1.59554 1.58924 1.41862 1.11487 1.11309 1.55687 1.19746 0.98834 0.86008 1.38058 0.87870 1.25251 0.95038 1.00178 0.97548 1.69621 1.02657 1.36154 1.46009 0.85805 0.78422 0.82059 0.78086 1.19224 1.20773 1.20818 0.91790 0.91633 0.92334 0.92034 0.91960 0.91243 0.91803 0.92349 0.92405 0.88052 0.88022 0.76659 0.91283 0.89964 0.90780 0.91555 0.90897 0.91592 0.94300 0.88490 0.89385 0.93042 0.77570 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.53 37.16 0.35 -0.78 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 3 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 4 O -0.39 -3.53 9.99 -35.23 -0.35 -3.88 16 5 C 0.08 0.70 5.04 37.16 0.19 0.89 16 6 C -0.14 -1.06 6.07 -27.89 -0.17 -1.23 16 7 C 0.52 5.62 7.83 -10.99 -0.09 5.54 16 8 O -0.54 -8.33 15.98 5.56 0.09 -8.25 16 9 N -0.73 -6.77 5.35 -60.30 -0.32 -7.09 16 10 C 0.13 1.63 5.22 -4.04 -0.02 1.61 16 11 C 0.05 0.55 2.35 -65.89 -0.16 0.39 16 12 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 13 C -0.12 -1.16 6.23 -25.35 -0.16 -1.32 16 14 C -0.12 -1.39 7.00 -25.35 -0.18 -1.56 16 15 C 0.04 0.59 5.95 -2.18 -0.01 0.57 16 16 N -0.47 -7.67 4.65 -223.29 -1.04 -8.71 16 17 C 0.03 0.58 5.29 -4.97 -0.03 0.55 16 18 C 0.45 10.62 7.64 -10.98 -0.08 10.53 16 19 O -0.58 -15.67 14.91 5.55 0.08 -15.59 16 20 N -0.57 -14.49 5.29 -10.96 -0.06 -14.54 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 32 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.06 0.56 7.83 -51.92 -0.41 0.16 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.45 8.37 -40.82 -0.34 2.11 16 41 H 0.07 0.98 7.28 -51.92 -0.38 0.60 16 42 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 48 H 0.10 1.74 7.33 -51.93 -0.38 1.36 16 49 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 50 H 0.05 0.82 7.74 -51.93 -0.40 0.42 16 51 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 52 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 422.11 15.07 6.36 6.36 Total: -1.00 -34.19 422.11 -9.07 -43.27 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -9.21 Total: 9.07 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.32 Total: 7.16 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.69 Total: -54.41 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.18 Total: -27.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.19 -9.07 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663470807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.615 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds