Wall clock time and date at job start Wed Apr 1 2020 00:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 O 1.42895 * 109.47315 * 120.00785 * 2 1 3 5 5 C 1.42892 * 114.00405 * 90.00275 * 4 2 1 6 6 C 1.53000 * 109.47464 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47258 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00187 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00171 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47206 * 185.05022 * 10 9 7 12 12 H 1.09001 * 110.36758 * 302.94061 * 11 10 9 13 13 C 1.54384 * 110.41158 * 65.28636 * 11 10 9 14 14 C 1.54260 * 105.06138 * 142.63385 * 13 11 10 15 15 C 1.54382 * 105.06108 * 359.97438 * 14 13 11 16 16 N 1.48564 * 104.70019 * 336.09028 * 15 14 13 17 17 C 1.46904 * 111.00044 * 159.09284 * 16 15 14 18 18 C 1.50704 * 109.46420 * 75.88964 * 17 16 15 19 19 O 1.21284 * 120.00322 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99612 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00103 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99772 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00168 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99872 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00004 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47326 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47065 * 120.00376 * 25 23 21 28 28 H 1.48506 * 109.47216 * 239.99767 * 25 23 21 29 29 H 1.09000 * 109.47103 * 299.99440 * 1 2 3 30 30 H 1.08997 * 109.47468 * 59.99393 * 1 2 3 31 31 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46598 * 240.00669 * 2 1 3 33 33 H 1.09000 * 109.47004 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47572 * 300.00543 * 3 2 1 35 35 H 1.09002 * 109.46965 * 60.00894 * 3 2 1 36 36 H 1.09001 * 109.47450 * 59.99652 * 5 4 2 37 37 H 1.09009 * 109.46788 * 299.99880 * 5 4 2 38 38 H 1.09001 * 109.46923 * 59.99511 * 6 5 4 39 39 H 1.09000 * 109.46944 * 299.99873 * 6 5 4 40 40 H 0.96997 * 119.99570 * 0.02562 * 9 7 6 41 41 H 1.09008 * 109.47041 * 65.05547 * 10 9 7 42 42 H 1.08995 * 109.47850 * 305.05541 * 10 9 7 43 43 H 1.09004 * 110.32028 * 23.73452 * 13 11 10 44 44 H 1.09001 * 110.32211 * 261.53157 * 13 11 10 45 45 H 1.09003 * 110.31864 * 241.10892 * 14 13 11 46 46 H 1.08992 * 110.32364 * 118.89579 * 14 13 11 47 47 H 1.09004 * 110.40590 * 94.92457 * 15 14 13 48 48 H 1.08999 * 110.41405 * 217.25130 * 15 14 13 49 49 H 1.08993 * 109.46975 * 195.88751 * 17 16 15 50 50 H 1.08994 * 109.47016 * 315.89555 * 17 16 15 51 51 H 0.97003 * 119.99960 * 359.97438 * 20 18 17 52 52 H 0.97002 * 120.00009 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.2002 -2.0782 0.9884 6 6 2.7093 -2.6926 2.2938 7 6 2.9131 -4.1739 2.1060 8 8 2.6751 -4.6875 1.0334 9 7 3.3608 -4.9277 3.1296 10 6 3.5584 -6.3678 2.9471 11 6 3.9468 -7.0027 4.2838 12 1 4.8417 -6.5264 4.6843 13 6 2.7818 -6.8926 5.2909 14 6 2.8112 -8.2153 6.0840 15 6 3.9910 -9.0137 5.4890 16 7 4.1637 -8.4664 4.1187 17 6 5.5112 -8.7472 3.6056 18 6 5.6005 -10.1943 3.1943 19 8 4.6364 -10.9200 3.3162 20 7 6.7514 -10.6818 2.6901 21 6 6.8325 -11.9981 2.3154 22 1 5.9743 -12.6445 2.4247 23 6 8.0188 -12.5005 1.7951 24 7 9.0633 -11.7141 1.6625 25 14 8.1295 -14.2941 1.2853 26 1 6.8263 -14.9609 1.5344 27 1 8.4599 -14.3784 -0.1601 28 1 9.1905 -14.9688 2.0756 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.9321 -2.2466 0.1983 37 1 1.2538 -2.5434 0.7122 38 1 1.9777 -2.5242 3.0841 39 1 3.6556 -2.2274 2.5696 40 1 3.5515 -4.5168 3.9873 41 1 4.3532 -6.5362 2.2203 42 1 2.6342 -6.8185 2.5856 43 1 1.8338 -6.7885 4.7631 44 1 2.9385 -6.0464 5.9599 45 1 1.8776 -8.7606 5.9455 46 1 2.9823 -8.0185 7.1423 47 1 4.8938 -8.8540 6.0787 48 1 3.7485 -10.0756 5.4465 49 1 5.7114 -8.1114 2.7433 50 1 6.2461 -8.5450 4.3847 51 1 7.5221 -10.1011 2.5915 52 1 9.8914 -12.0647 1.2989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663470807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:53 Heat of formation + Delta-G solvation = -153.307831 kcal Electronic energy + Delta-G solvation = -29398.819409 eV Core-core repulsion = 25203.783313 eV Total energy + Delta-G solvation = -4195.036096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11890 -40.48615 -39.38830 -39.10550 -36.04763 -35.73520 -34.30720 -33.46724 -32.96096 -32.14832 -30.58055 -28.33622 -28.11440 -26.54025 -25.92666 -24.22258 -22.35001 -22.27119 -21.41120 -21.14968 -20.88840 -19.89093 -18.47802 -17.75285 -17.43363 -17.30804 -17.01969 -16.86755 -16.42497 -16.11306 -16.01884 -15.81492 -15.70630 -15.57532 -15.01506 -14.73215 -14.49794 -14.40005 -14.07905 -13.76323 -13.67304 -13.50368 -13.36106 -13.08394 -13.06629 -12.92910 -12.87546 -12.72778 -12.41736 -12.37807 -12.29925 -12.15684 -12.11905 -12.10451 -11.89431 -11.60894 -11.50983 -11.36027 -11.03393 -10.56151 -10.35785 -10.12741 -10.01501 -9.39832 -8.47637 -5.96218 1.35229 1.40145 1.54511 1.59751 1.88612 2.04911 2.28008 2.70113 2.98970 3.18802 3.37011 3.59084 3.70268 3.78234 3.96012 4.00454 4.03312 4.15573 4.18962 4.20121 4.22566 4.30782 4.32062 4.41528 4.45453 4.50586 4.53373 4.68377 4.72353 4.77537 4.79312 4.84456 4.91756 4.93879 4.98654 4.99345 5.03359 5.07154 5.24991 5.28678 5.30907 5.33822 5.36278 5.40208 5.84868 5.95011 6.08022 6.23959 6.53033 6.60028 7.12537 7.23699 7.55762 8.12203 8.70145 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.001808 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.556511 B =15484.979444 C =16951.112789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.146 4.146 4 O -0.394 6.394 5 C 0.078 3.922 6 C -0.126 4.126 7 C 0.514 3.486 8 O -0.591 6.591 9 N -0.707 5.707 10 C 0.140 3.860 11 C 0.054 3.946 12 H 0.083 0.917 13 C -0.109 4.109 14 C -0.116 4.116 15 C 0.036 3.964 16 N -0.506 5.506 17 C 0.047 3.953 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.420 0.580 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 27.386 6.287 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.314 6.314 5 C 0.001 3.999 6 C -0.165 4.165 7 C 0.302 3.698 8 O -0.472 6.472 9 N -0.360 5.360 10 C 0.015 3.985 11 C -0.054 4.054 12 H 0.100 0.900 13 C -0.147 4.147 14 C -0.154 4.154 15 C -0.092 4.092 16 N -0.231 5.231 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.258 0.742 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.119 0.881 50 H 0.094 0.906 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.297 26.342 5.341 29.557 hybrid contribution 1.319 -0.872 -0.101 1.585 sum -10.978 25.469 5.240 28.225 Atomic orbital electron populations 1.22287 0.95316 1.02144 1.03336 1.22297 0.94324 0.94408 0.87587 1.21864 1.01659 0.93460 1.03343 1.87811 1.86911 1.19808 1.36862 1.22076 0.99693 0.81200 0.96977 1.21413 1.06339 0.89040 0.99747 1.20969 0.75645 0.89935 0.83280 1.90745 1.52731 1.75619 1.28069 1.45668 1.67095 1.07820 1.15430 1.20971 1.00714 0.80085 0.96686 1.22936 0.99864 0.87993 0.94648 0.89953 1.22368 0.97274 0.98316 0.96740 1.22269 0.97292 0.95610 1.00219 1.23093 0.98799 0.99715 0.87565 1.64910 1.25437 1.09389 1.23351 1.21917 0.91611 0.93237 1.01671 1.20768 0.83036 0.90750 0.82516 1.90484 1.38096 1.61490 1.60072 1.41936 1.12328 1.10742 1.56368 1.19686 0.98820 0.87279 1.40392 0.90464 1.26028 0.94261 1.04198 0.96816 1.69678 1.02998 1.37699 1.45838 0.84873 0.78230 0.77052 0.78182 1.19901 1.19703 1.19391 0.91674 0.90177 0.93302 0.92313 0.92236 0.89642 0.91728 0.93731 0.93648 0.85529 0.85695 0.74190 0.93464 0.92737 0.91225 0.87400 0.91874 0.88721 0.93230 0.92811 0.88053 0.90585 0.77095 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.53 71.98 0.69 -1.39 16 2 C 0.07 0.98 3.34 30.60 0.10 1.09 16 3 C -0.15 -1.50 9.56 71.98 0.69 -0.81 16 4 O -0.39 -6.71 9.99 -148.98 -1.49 -8.20 16 5 C 0.08 1.38 5.04 71.98 0.36 1.74 16 6 C -0.13 -1.64 6.07 29.85 0.18 -1.46 16 7 C 0.51 10.59 7.83 87.66 0.69 11.28 16 8 O -0.59 -18.71 15.98 -3.03 -0.05 -18.76 16 9 N -0.71 -11.58 5.35 -463.07 -2.48 -14.05 16 10 C 0.14 3.35 5.22 86.38 0.45 3.80 16 11 C 0.05 1.14 2.35 45.00 0.11 1.25 16 12 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16 13 C -0.11 -1.77 6.23 31.49 0.20 -1.58 16 14 C -0.12 -2.34 7.00 31.49 0.22 -2.12 16 15 C 0.04 1.06 5.95 86.45 0.51 1.58 16 16 N -0.51 -16.14 4.65 -860.37 -4.00 -20.14 16 17 C 0.05 1.66 5.29 85.56 0.45 2.12 16 18 C 0.44 21.71 7.64 87.66 0.67 22.38 16 19 O -0.62 -35.23 14.91 -3.04 -0.05 -35.27 16 20 N -0.58 -30.38 5.29 -306.99 -1.62 -32.00 16 21 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.55 13.05 21.66 0.28 -50.26 16 25 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 32 H 0.06 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.04 0.90 8.04 -2.39 -0.02 0.88 16 37 H 0.05 0.90 7.83 -2.38 -0.02 0.88 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 3.43 8.37 -92.71 -0.78 2.65 16 41 H 0.05 1.34 7.28 -2.38 -0.02 1.32 16 42 H 0.05 1.62 8.07 -2.39 -0.02 1.60 16 43 H 0.07 1.23 7.81 -2.38 -0.02 1.21 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.33 7.73 -2.39 -0.02 1.31 16 48 H 0.05 2.03 7.33 -2.39 -0.02 2.01 16 49 H 0.10 3.29 7.15 -2.39 -0.02 3.27 16 50 H 0.08 2.30 7.74 -2.39 -0.02 2.29 16 51 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 52 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -78.77 422.11 -1.37 -80.13 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.59 Total: 33.55 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.60 Total: 19.06 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -7.81 Total: -116.45 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -1.58 Total: -62.23 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -78.77 -1.37 -80.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663470807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.177 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds