Wall clock time and date at job start Wed Apr 1 2020 00:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46741 * 2 1 4 4 O 1.42896 * 109.47102 * 120.00251 * 2 1 3 5 5 C 1.42900 * 113.99837 * 150.00805 * 4 2 1 6 6 C 1.53005 * 109.47196 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46885 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31415 * 119.99946 * 0.27414 * 23 21 20 25 25 Si 1.86800 * 120.00042 * 180.27410 * 23 21 20 26 26 H 1.48497 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 119.99912 * 25 23 21 28 28 H 1.48496 * 109.47092 * 239.99965 * 25 23 21 29 29 H 1.08996 * 109.47296 * 299.99624 * 1 2 3 30 30 H 1.08999 * 109.47322 * 59.99973 * 1 2 3 31 31 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00893 * 2 1 3 33 33 H 1.09008 * 109.46742 * 60.00444 * 3 2 1 34 34 H 1.09001 * 109.46998 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47632 * 300.00442 * 3 2 1 36 36 H 1.08996 * 109.47445 * 59.99293 * 5 4 2 37 37 H 1.09006 * 109.46878 * 299.99560 * 5 4 2 38 38 H 1.09000 * 109.46518 * 59.99720 * 6 5 4 39 39 H 1.08996 * 109.47096 * 299.99570 * 6 5 4 40 40 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 41 41 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 42 42 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 43 43 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 44 44 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 45 45 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 46 46 H 1.09005 * 110.38991 * 140.91656 * 14 13 11 47 47 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 48 48 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 49 49 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 50 50 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 51 51 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 52 52 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3243 0.9885 6 6 3.6762 -2.0080 2.2945 7 6 5.0044 -2.6947 2.1063 8 8 5.5673 -2.6429 1.0333 9 7 5.5662 -3.3674 3.1303 10 6 6.8571 -4.0354 2.9473 11 6 7.1856 -4.8604 4.1932 12 1 7.1935 -4.2298 5.0823 13 6 8.5440 -5.5866 4.0257 14 6 8.4180 -6.7835 4.9960 15 6 6.9039 -6.9856 5.1909 16 7 6.2201 -5.9779 4.3516 17 6 4.9799 -5.5158 4.9892 18 6 5.3106 -4.8142 6.2812 19 8 6.4488 -4.8198 6.7004 20 7 4.3416 -4.1805 6.9712 21 6 4.6424 -3.5427 8.1469 22 1 5.6557 -3.5485 8.5205 23 6 3.6444 -2.8845 8.8553 24 7 2.4114 -2.8780 8.4009 25 14 4.0557 -2.0090 10.4533 26 1 5.5037 -2.1634 10.7438 27 1 3.7280 -0.5663 10.3258 28 1 3.2623 -2.6009 11.5603 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 4.0200 -0.5872 0.7124 37 1 3.1810 -2.0705 0.1985 38 1 2.9223 -2.7452 2.5709 39 1 3.7614 -1.2616 3.0842 40 1 5.1158 -3.4092 3.9883 41 1 7.6345 -3.2873 2.7914 42 1 6.8062 -4.6928 2.0792 43 1 9.3678 -4.9363 4.3202 44 1 8.6754 -5.9330 3.0007 45 1 8.8942 -6.5503 5.9483 46 1 8.8656 -7.6759 4.5583 47 1 6.6411 -6.8366 6.2382 48 1 6.6165 -7.9886 4.8751 49 1 4.3364 -6.3712 5.1945 50 1 4.4641 -4.8248 4.3223 51 1 3.4314 -4.1758 6.6358 52 1 1.7147 -2.4188 8.8956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663470808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:58 Heat of formation + Delta-G solvation = -117.051474 kcal Electronic energy + Delta-G solvation = -31098.995932 eV Core-core repulsion = 26905.532030 eV Total energy + Delta-G solvation = -4193.463902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21035 -39.30640 -38.30864 -37.23527 -34.52392 -34.06062 -33.43084 -32.02130 -31.28232 -31.10191 -29.47503 -27.41953 -26.73259 -25.25604 -24.26656 -23.02264 -21.47844 -20.93933 -20.53279 -19.91132 -19.17983 -17.98766 -17.38950 -16.76631 -16.16793 -16.04893 -15.71526 -15.60557 -15.04753 -14.83028 -14.75468 -14.54098 -14.23295 -14.07906 -13.85725 -13.64668 -13.38907 -12.98432 -12.85958 -12.56199 -12.46364 -12.35896 -12.13606 -11.90417 -11.77632 -11.58440 -11.52786 -11.25492 -11.22828 -11.17122 -11.02051 -10.84550 -10.80205 -10.72991 -10.45738 -10.36524 -10.25332 -9.74509 -9.64089 -9.52161 -9.28947 -8.85040 -8.11582 -7.63427 -6.56664 -3.98471 2.75011 3.05160 3.07114 3.18910 3.24740 3.65356 3.82060 4.05387 4.27864 4.68401 4.79889 4.82409 4.85227 4.94373 4.99620 5.03080 5.04786 5.10060 5.15688 5.27700 5.38640 5.42191 5.49808 5.58418 5.62640 5.66495 5.67305 5.69313 5.79133 5.81840 5.82821 5.89454 5.95081 5.96842 6.00478 6.04434 6.08296 6.11730 6.26804 6.33764 6.53041 6.59124 6.65878 7.15680 7.18343 7.28499 7.41007 7.60831 7.88478 8.31436 8.41063 9.00772 9.34602 9.83568 10.59296 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006957 B = 0.003622 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4023.865335 B = 7727.936454 C =11006.257203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.384 6.384 5 C 0.081 3.919 6 C -0.144 4.144 7 C 0.518 3.482 8 O -0.552 6.552 9 N -0.723 5.723 10 C 0.135 3.865 11 C 0.028 3.972 12 H 0.109 0.891 13 C -0.107 4.107 14 C -0.118 4.118 15 C 0.035 3.965 16 N -0.489 5.489 17 C 0.021 3.979 18 C 0.397 3.603 19 O -0.587 6.587 20 N -0.551 5.551 21 C -0.305 4.305 22 H 0.104 0.896 23 C 0.028 3.972 24 N -0.893 5.893 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.393 0.607 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 0.846 -13.666 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.303 6.303 5 C 0.004 3.996 6 C -0.184 4.184 7 C 0.305 3.695 8 O -0.431 6.431 9 N -0.377 5.377 10 C 0.011 3.989 11 C -0.080 4.080 12 H 0.126 0.874 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.093 4.093 16 N -0.212 5.212 17 C -0.111 4.111 18 C 0.182 3.818 19 O -0.475 6.475 20 N -0.186 5.186 21 C -0.435 4.435 22 H 0.122 0.878 23 C -0.175 4.175 24 N -0.533 5.533 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.243 0.757 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.226 0.774 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.849 0.736 -14.394 14.438 hybrid contribution -0.452 0.785 1.740 1.962 sum 0.397 1.521 -12.654 12.751 Atomic orbital electron populations 1.21866 0.93636 1.02763 1.02447 1.22054 0.94923 0.92409 0.88196 1.22313 1.01695 0.96865 1.02497 1.87891 1.36676 1.70083 1.35686 1.22113 0.85331 0.95789 0.96318 1.21509 0.95294 1.01699 0.99930 1.20374 0.86725 0.78468 0.83954 1.90674 1.64711 1.61587 1.26092 1.46368 1.23158 1.53314 1.14908 1.21379 0.84161 0.94928 0.98426 1.23499 0.91922 0.94075 0.98484 0.87376 1.22292 0.95923 0.96808 0.99530 1.22213 0.96304 0.97638 0.99490 1.22830 0.93223 0.94999 0.98242 1.65100 1.03599 1.09841 1.42709 1.22373 0.94532 1.00493 0.93728 1.20949 0.86642 0.85847 0.88338 1.90460 1.20533 1.65566 1.70917 1.42103 1.10008 1.45565 1.20943 1.19757 0.96933 1.28672 0.98123 0.87810 1.25295 0.94765 0.97661 0.99823 1.69608 1.00745 1.43031 1.39915 0.85819 0.78886 0.78821 0.80962 1.19222 1.20595 1.20628 0.91675 0.91418 0.91939 0.92242 0.91684 0.92414 0.91796 0.92656 0.92560 0.87807 0.87764 0.75708 0.91715 0.90768 0.91345 0.91374 0.91407 0.92028 0.91091 0.91763 0.88999 0.89471 0.77369 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.56 37.16 0.36 -0.93 16 2 C 0.08 0.83 3.34 -26.73 -0.09 0.74 16 3 C -0.18 -1.59 9.53 37.16 0.35 -1.24 16 4 O -0.38 -4.90 9.99 -35.23 -0.35 -5.26 16 5 C 0.08 1.03 5.04 37.16 0.19 1.21 16 6 C -0.14 -1.86 6.07 -27.88 -0.17 -2.03 16 7 C 0.52 7.80 7.83 -10.98 -0.09 7.72 16 8 O -0.55 -9.71 15.96 5.55 0.09 -9.62 16 9 N -0.72 -10.80 4.68 -60.29 -0.28 -11.08 16 10 C 0.13 2.01 5.41 -4.05 -0.02 1.98 16 11 C 0.03 0.45 2.18 -65.79 -0.14 0.30 16 12 H 0.11 2.07 5.05 -51.93 -0.26 1.81 16 13 C -0.11 -1.45 6.50 -24.87 -0.16 -1.61 16 14 C -0.12 -1.65 6.93 -25.38 -0.18 -1.82 16 15 C 0.03 0.55 6.01 -2.75 -0.02 0.53 16 16 N -0.49 -7.75 5.23 -224.07 -1.17 -8.92 16 17 C 0.02 0.35 5.32 -4.98 -0.03 0.33 16 18 C 0.40 8.24 6.34 -10.98 -0.07 8.17 16 19 O -0.59 -13.70 11.37 5.55 0.06 -13.64 16 20 N -0.55 -12.60 5.29 -10.96 -0.06 -12.66 16 21 C -0.31 -7.87 9.68 -14.93 -0.14 -8.01 16 22 H 0.10 2.84 7.16 -52.49 -0.38 2.46 16 23 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 24 N -0.89 -22.86 13.05 55.50 0.72 -22.13 16 25 Si 0.93 20.04 29.55 -169.99 -5.02 15.02 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 37 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.40 6.18 5.48 -40.82 -0.22 5.96 16 41 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 44 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.32 5.79 -51.93 -0.30 1.02 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 50 H 0.09 1.32 5.30 -51.93 -0.28 1.04 16 51 H 0.39 8.67 7.90 -40.82 -0.32 8.34 16 52 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -29.26 410.20 -9.00 -38.26 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -8.87 Total: 17.93 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.30 Total: 5.92 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.79 Total: -54.79 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.20 Total: -28.52 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.26 -9.00 -38.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663470808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.795 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds