Wall clock time and date at job start Wed Apr 1 2020 00:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46741 * 2 1 4 4 O 1.42896 * 109.47102 * 120.00251 * 2 1 3 5 5 C 1.42900 * 113.99837 * 150.00805 * 4 2 1 6 6 C 1.53005 * 109.47196 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46885 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31415 * 119.99946 * 0.27414 * 23 21 20 25 25 Si 1.86800 * 120.00042 * 180.27410 * 23 21 20 26 26 H 1.48497 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 119.99912 * 25 23 21 28 28 H 1.48496 * 109.47092 * 239.99965 * 25 23 21 29 29 H 1.08996 * 109.47296 * 299.99624 * 1 2 3 30 30 H 1.08999 * 109.47322 * 59.99973 * 1 2 3 31 31 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00893 * 2 1 3 33 33 H 1.09008 * 109.46742 * 60.00444 * 3 2 1 34 34 H 1.09001 * 109.46998 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47632 * 300.00442 * 3 2 1 36 36 H 1.08996 * 109.47445 * 59.99293 * 5 4 2 37 37 H 1.09006 * 109.46878 * 299.99560 * 5 4 2 38 38 H 1.09000 * 109.46518 * 59.99720 * 6 5 4 39 39 H 1.08996 * 109.47096 * 299.99570 * 6 5 4 40 40 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 41 41 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 42 42 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 43 43 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 44 44 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 45 45 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 46 46 H 1.09005 * 110.38991 * 140.91656 * 14 13 11 47 47 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 48 48 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 49 49 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 50 50 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 51 51 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 52 52 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3243 0.9885 6 6 3.6762 -2.0080 2.2945 7 6 5.0044 -2.6947 2.1063 8 8 5.5673 -2.6429 1.0333 9 7 5.5662 -3.3674 3.1303 10 6 6.8571 -4.0354 2.9473 11 6 7.1856 -4.8604 4.1932 12 1 7.1935 -4.2298 5.0823 13 6 8.5440 -5.5866 4.0257 14 6 8.4180 -6.7835 4.9960 15 6 6.9039 -6.9856 5.1909 16 7 6.2201 -5.9779 4.3516 17 6 4.9799 -5.5158 4.9892 18 6 5.3106 -4.8142 6.2812 19 8 6.4488 -4.8198 6.7004 20 7 4.3416 -4.1805 6.9712 21 6 4.6424 -3.5427 8.1469 22 1 5.6557 -3.5485 8.5205 23 6 3.6444 -2.8845 8.8553 24 7 2.4114 -2.8780 8.4009 25 14 4.0557 -2.0090 10.4533 26 1 5.5037 -2.1634 10.7438 27 1 3.7280 -0.5663 10.3258 28 1 3.2623 -2.6009 11.5603 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 4.0200 -0.5872 0.7124 37 1 3.1810 -2.0705 0.1985 38 1 2.9223 -2.7452 2.5709 39 1 3.7614 -1.2616 3.0842 40 1 5.1158 -3.4092 3.9883 41 1 7.6345 -3.2873 2.7914 42 1 6.8062 -4.6928 2.0792 43 1 9.3678 -4.9363 4.3202 44 1 8.6754 -5.9330 3.0007 45 1 8.8942 -6.5503 5.9483 46 1 8.8656 -7.6759 4.5583 47 1 6.6411 -6.8366 6.2382 48 1 6.6165 -7.9886 4.8751 49 1 4.3364 -6.3712 5.1945 50 1 4.4641 -4.8248 4.3223 51 1 3.4314 -4.1758 6.6358 52 1 1.7147 -2.4188 8.8956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663470808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:57 Heat of formation + Delta-G solvation = -137.798346 kcal Electronic energy + Delta-G solvation = -31099.895584 eV Core-core repulsion = 26905.532030 eV Total energy + Delta-G solvation = -4194.363554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58384 -40.61378 -39.26994 -38.75253 -35.99733 -35.66222 -34.30918 -33.53096 -32.96343 -32.13793 -30.64419 -28.26773 -28.11356 -26.55143 -25.83954 -24.14431 -22.27672 -22.13140 -21.92065 -21.20074 -20.71710 -19.79688 -18.52262 -18.06481 -17.33733 -17.20949 -17.07791 -16.83190 -16.49166 -16.17912 -15.99140 -15.74749 -15.67658 -15.47540 -15.29049 -14.71878 -14.55844 -14.31318 -13.93986 -13.68969 -13.55926 -13.37540 -13.32449 -13.12390 -13.04707 -12.85246 -12.73437 -12.52049 -12.41384 -12.39437 -12.21313 -12.13331 -12.12113 -12.10427 -11.96037 -11.63847 -11.59643 -11.16800 -10.98705 -10.89596 -10.55278 -10.09895 -9.97300 -9.14939 -8.46842 -5.95474 1.33689 1.41842 1.53669 1.54028 1.96049 1.98192 2.27746 2.83720 2.98534 3.19125 3.19932 3.67361 3.77264 3.80756 3.91771 3.98520 4.05390 4.14723 4.19029 4.26356 4.30878 4.37453 4.41421 4.46301 4.47956 4.57416 4.61650 4.68335 4.75860 4.78010 4.79402 4.81682 4.91450 4.93742 4.97552 4.98643 5.09530 5.14669 5.25471 5.29033 5.34243 5.39432 5.41580 5.42603 5.87902 5.90049 6.03973 6.26980 6.38251 6.56314 7.09507 7.10942 7.52854 8.06115 8.68427 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006957 B = 0.003622 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4023.865335 B = 7727.936454 C =11006.257203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.401 6.401 5 C 0.087 3.913 6 C -0.140 4.140 7 C 0.521 3.479 8 O -0.577 6.577 9 N -0.723 5.723 10 C 0.140 3.860 11 C 0.030 3.970 12 H 0.073 0.927 13 C -0.103 4.103 14 C -0.116 4.116 15 C 0.032 3.968 16 N -0.481 5.481 17 C 0.030 3.970 18 C 0.406 3.594 19 O -0.611 6.611 20 N -0.564 5.564 21 C -0.329 4.329 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.913 5.913 25 Si 0.985 3.015 26 H -0.275 1.275 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.037 0.963 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 0.553 -14.946 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.321 6.321 5 C 0.010 3.990 6 C -0.180 4.180 7 C 0.308 3.692 8 O -0.457 6.457 9 N -0.376 5.376 10 C 0.016 3.984 11 C -0.078 4.078 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.154 4.154 15 C -0.095 4.095 16 N -0.204 5.204 17 C -0.103 4.103 18 C 0.193 3.807 19 O -0.499 6.499 20 N -0.200 5.200 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.207 4.207 24 N -0.554 5.554 25 Si 0.809 3.191 26 H -0.199 1.199 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.241 0.759 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.055 0.945 48 H 0.104 0.896 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.589 0.434 -15.681 15.698 hybrid contribution -0.309 0.831 2.076 2.258 sum 0.281 1.264 -13.604 13.666 Atomic orbital electron populations 1.21877 0.92489 1.02842 1.03225 1.22331 0.95891 0.92766 0.87635 1.22299 1.01212 0.96395 1.03212 1.87869 1.36530 1.70415 1.37275 1.22012 0.85388 0.95623 0.95985 1.21496 0.94355 1.01875 1.00268 1.20670 0.87119 0.77993 0.83383 1.90660 1.65528 1.62532 1.27014 1.46408 1.23204 1.53261 1.14771 1.21338 0.84238 0.94893 0.97885 1.23389 0.93382 0.93766 0.97298 0.90935 1.22333 0.94723 0.96486 1.00632 1.22215 0.95029 0.99021 0.99120 1.22876 0.94558 0.95901 0.96214 1.65180 1.03410 1.09771 1.42008 1.22420 0.95426 1.00938 0.91475 1.21768 0.85746 0.84229 0.88939 1.90464 1.21701 1.65843 1.71851 1.42110 1.10532 1.46562 1.20782 1.19633 0.96149 1.30335 0.99784 0.90296 1.25921 0.94603 0.97971 1.02216 1.69660 1.01168 1.43625 1.40899 0.84984 0.78164 0.78072 0.77845 1.19927 1.19850 1.19895 0.92384 0.89144 0.92214 0.91448 0.92379 0.93149 0.89669 0.93178 0.92522 0.86585 0.87641 0.75944 0.91430 0.90460 0.90744 0.89297 0.92966 0.89189 0.94487 0.89634 0.87284 0.87746 0.77003 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.56 71.98 0.69 -1.63 16 2 C 0.07 1.35 3.34 30.60 0.10 1.45 16 3 C -0.17 -2.95 9.53 71.98 0.69 -2.26 16 4 O -0.40 -9.97 9.99 -148.98 -1.49 -11.45 16 5 C 0.09 2.14 5.04 71.98 0.36 2.50 16 6 C -0.14 -3.51 6.07 29.85 0.18 -3.33 16 7 C 0.52 15.26 7.83 87.66 0.69 15.94 16 8 O -0.58 -19.83 15.96 -3.04 -0.05 -19.88 16 9 N -0.72 -21.02 4.68 -463.06 -2.17 -23.18 16 10 C 0.14 4.01 5.41 86.38 0.47 4.47 16 11 C 0.03 0.92 2.18 45.26 0.10 1.02 16 12 H 0.07 2.81 5.05 -2.38 -0.01 2.80 16 13 C -0.10 -2.62 6.50 31.80 0.21 -2.41 16 14 C -0.12 -3.03 6.93 31.47 0.22 -2.82 16 15 C 0.03 0.97 6.01 86.44 0.52 1.49 16 16 N -0.48 -14.55 5.23 -862.81 -4.51 -19.06 16 17 C 0.03 0.96 5.32 85.56 0.46 1.42 16 18 C 0.41 17.08 6.34 87.66 0.56 17.63 16 19 O -0.61 -29.23 11.37 -3.06 -0.03 -29.27 16 20 N -0.56 -26.21 5.29 -306.97 -1.62 -27.83 16 21 C -0.33 -17.38 9.68 84.04 0.81 -16.57 16 22 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.01 -0.32 5.50 84.93 0.47 0.15 16 24 N -0.91 -46.77 13.05 21.66 0.28 -46.49 16 25 Si 0.98 41.32 29.55 68.60 2.03 43.34 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.16 7.79 -2.39 -0.02 1.15 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 0.91 7.87 -2.39 -0.02 0.90 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.27 7.83 -2.39 -0.02 1.25 16 37 H 0.06 1.37 8.04 -2.38 -0.02 1.35 16 38 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.40 12.10 5.48 -92.71 -0.51 11.59 16 41 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.08 2.20 8.11 -2.38 -0.02 2.18 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.04 1.37 5.79 -2.39 -0.01 1.36 16 48 H 0.09 2.20 8.14 -2.38 -0.02 2.19 16 49 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.10 3.02 5.30 -2.38 -0.01 3.00 16 51 H 0.40 17.66 7.90 -92.71 -0.73 16.93 16 52 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -63.15 410.20 -1.37 -64.52 By element: Atomic # 1 Polarization: 52.57 SS G_CDS: -0.32 Total: 52.25 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 6.51 Total: 17.06 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -8.02 Total: -116.57 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.57 Total: -60.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.15 -1.37 -64.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663470808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.279 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds