Wall clock time and date at job start Wed Apr 1 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47346 * 305.00346 * 6 5 4 8 8 C 1.53004 * 109.47236 * 65.00086 * 6 5 4 9 9 C 1.50699 * 109.47337 * 185.00273 * 6 5 4 10 10 O 1.21276 * 119.99979 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99964 * 179.97438 * 9 6 5 12 12 C 1.46502 * 119.99977 * 179.97438 * 11 9 6 13 13 H 1.09001 * 110.28674 * 35.67922 * 12 11 9 14 14 C 1.54258 * 110.32619 * 273.55252 * 12 11 9 15 15 C 1.54389 * 105.06044 * 241.10208 * 14 12 11 16 16 N 1.48564 * 104.58917 * 23.85033 * 15 14 12 17 17 C 1.46904 * 110.99563 * 200.95790 * 16 15 14 18 18 C 1.50706 * 109.47370 * 290.12992 * 17 16 15 19 19 O 1.21294 * 119.99642 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99886 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00026 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99650 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00247 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00011 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00187 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47185 * 89.99490 * 25 23 21 27 27 H 1.48493 * 109.47310 * 210.00003 * 25 23 21 28 28 H 1.48501 * 109.46768 * 330.00186 * 25 23 21 29 29 C 1.48555 * 104.22801 * 320.51953 * 16 15 14 30 30 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 36 36 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 39 39 H 1.09001 * 109.46917 * 300.00567 * 8 6 5 40 40 H 1.09004 * 109.46741 * 59.99889 * 8 6 5 41 41 H 1.09000 * 109.47403 * 180.02562 * 8 6 5 42 42 H 0.97004 * 120.00146 * 0.02562 * 11 9 6 43 43 H 1.09001 * 110.32653 * 359.97438 * 14 12 11 44 44 H 1.09003 * 110.32282 * 122.10600 * 14 12 11 45 45 H 1.08993 * 110.41208 * 142.62717 * 15 14 12 46 46 H 1.09006 * 110.40853 * 264.95790 * 15 14 12 47 47 H 1.08992 * 109.46981 * 50.13366 * 17 16 15 48 48 H 1.08998 * 109.46864 * 170.12965 * 17 16 15 49 49 H 0.97000 * 120.00134 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99744 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.41100 * 280.70835 * 29 16 15 52 52 H 1.08997 * 110.41458 * 158.26371 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0000 7 1 5.9987 1.8455 0.8421 8 6 6.1433 1.8129 -1.3071 9 6 6.2956 3.8328 0.1233 10 8 5.5825 4.8106 0.2028 11 7 7.6359 3.9727 0.1451 12 6 8.2314 5.3059 0.2644 13 1 7.6219 5.9354 0.9127 14 6 8.3779 5.9538 -1.1278 15 6 9.8937 6.1880 -1.3038 16 7 10.5328 5.1995 -0.3975 17 6 11.9068 5.6003 -0.0664 18 6 12.7790 5.4603 -1.2874 19 8 12.3028 5.0658 -2.3308 20 7 14.0879 5.7743 -1.2200 21 6 14.8815 5.6464 -2.3306 22 1 14.4576 5.2944 -3.2596 23 6 16.2310 5.9696 -2.2611 24 7 16.9916 5.8475 -3.3258 25 14 16.9643 6.5777 -0.6543 26 1 17.4557 5.4199 0.1352 27 1 18.0951 7.4961 -0.9424 28 1 15.9249 7.3006 0.1219 29 6 9.6709 5.2030 0.8125 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 3.8364 3.1227 -0.8904 38 1 3.8359 3.1237 0.8896 39 1 5.7001 0.8211 -1.3963 40 1 5.8275 2.4289 -2.1492 41 1 7.2298 1.7264 -1.3069 42 1 8.2062 3.1907 0.0812 43 1 8.0071 5.2798 -1.9000 44 1 7.8403 6.9014 -1.1628 45 1 10.1894 6.0036 -2.3365 46 1 10.1582 7.2035 -1.0089 47 1 11.9122 6.6380 0.2669 48 1 12.2899 4.9612 0.7291 49 1 14.4686 6.0901 -0.3856 50 1 17.9339 6.0728 -3.2771 51 1 9.9009 6.0637 1.4406 52 1 9.7990 4.2771 1.3732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665585190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:55 Heat of formation + Delta-G solvation = -120.771684 kcal Electronic energy + Delta-G solvation = -29434.413368 eV Core-core repulsion = 25240.788145 eV Total energy + Delta-G solvation = -4193.625223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39834 -39.09977 -38.38163 -37.69609 -35.80609 -34.48222 -33.85440 -31.96838 -31.66257 -30.75685 -28.53824 -27.50686 -26.74005 -25.95299 -24.23634 -23.78195 -21.75629 -21.26209 -20.60814 -20.00517 -19.36708 -18.32328 -17.30485 -16.86912 -16.60852 -16.47986 -16.07082 -15.58069 -15.50278 -15.38518 -14.91300 -14.72430 -14.61219 -14.27743 -13.84819 -13.73276 -13.42164 -13.22652 -13.01183 -12.65145 -12.62433 -12.38122 -12.26178 -12.19410 -12.05190 -11.91025 -11.78865 -11.65801 -11.59911 -11.51160 -11.23743 -11.13597 -10.99044 -10.95631 -10.76360 -10.61069 -10.08335 -9.99024 -9.82985 -9.57050 -9.20165 -8.64299 -8.20989 -8.14669 -6.32220 -3.83720 2.50774 2.97423 3.00777 3.05292 3.13733 3.38346 3.72178 3.94678 4.09046 4.35386 4.41301 4.51259 4.54460 4.67208 4.74748 4.78477 4.89186 4.91835 4.94035 5.01237 5.11588 5.12683 5.20202 5.22187 5.25120 5.27800 5.32414 5.34788 5.43003 5.56491 5.59975 5.60789 5.61884 5.64069 5.71052 5.76507 5.89359 5.90645 5.96389 6.00750 6.13052 6.37626 6.42253 6.73525 6.97008 7.02851 7.40849 7.56945 8.10667 8.13061 8.58992 8.94161 9.41250 9.82198 10.80930 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.001592 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.084612 B =17578.366408 C =17952.351022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.109 4.109 7 H 0.098 0.902 8 C -0.148 4.148 9 C 0.517 3.483 10 O -0.545 6.545 11 N -0.715 5.715 12 C 0.144 3.856 13 H 0.093 0.907 14 C -0.132 4.132 15 C 0.036 3.964 16 N -0.484 5.484 17 C 0.031 3.969 18 C 0.454 3.546 19 O -0.559 6.559 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.021 3.979 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.405 0.595 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.040 0.960 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.056 0.944 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.332 -6.639 12.177 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.158 4.158 5 C -0.135 4.135 6 C -0.130 4.130 7 H 0.116 0.884 8 C -0.206 4.206 9 C 0.304 3.696 10 O -0.422 6.422 11 N -0.367 5.367 12 C 0.038 3.962 13 H 0.111 0.889 14 C -0.171 4.171 15 C -0.092 4.092 16 N -0.208 5.208 17 C -0.101 4.101 18 C 0.239 3.761 19 O -0.440 6.440 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.241 0.759 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.778 -6.870 11.170 29.817 hybrid contribution 0.994 1.257 1.601 2.265 sum -25.784 -5.612 12.772 29.316 Atomic orbital electron populations 1.22738 0.81013 1.02746 1.00012 1.87864 1.19743 1.28297 1.95450 1.22565 0.94264 0.84471 1.00350 1.21589 0.92911 0.97653 1.03615 1.21288 0.92460 0.95970 1.03778 1.21288 0.96667 0.94140 1.00919 0.88402 1.21863 1.01932 1.01186 0.95616 1.20646 0.82205 0.91290 0.75484 1.90685 1.61081 1.40792 1.49686 1.46107 1.06597 1.09627 1.74349 1.21653 0.93178 0.84120 0.97204 0.88934 1.22770 0.96376 1.01093 0.96886 1.23207 0.92338 0.93173 1.00467 1.65179 1.00127 1.45946 1.09547 1.22100 0.90199 0.99689 0.98102 1.19576 0.82571 0.84250 0.89682 1.90549 1.73157 1.49223 1.31108 1.42202 1.08246 1.60420 1.12280 1.19422 0.90221 1.42266 0.91402 0.86289 1.25026 0.95959 0.97757 0.97363 1.69625 1.06631 1.47780 1.28131 0.86679 0.79779 0.79468 0.83478 1.19614 1.20200 1.19583 1.23447 0.91695 1.02051 0.93583 0.94054 0.89636 0.94088 0.93269 0.93192 0.90631 0.91017 0.91006 0.90926 0.91088 0.91930 0.91660 0.75936 0.90519 0.90949 0.88006 0.94188 0.93014 0.89123 0.79757 0.91626 0.92580 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.42 10.70 -35.23 -0.38 -3.79 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.12 -0.81 5.34 -26.73 -0.14 -0.96 16 5 C -0.10 -0.74 4.03 -26.73 -0.11 -0.85 16 6 C -0.11 -0.83 2.72 -91.77 -0.25 -1.08 16 7 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 8 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 9 C 0.52 5.51 7.15 -10.99 -0.08 5.43 16 10 O -0.55 -7.72 15.62 5.56 0.09 -7.63 16 11 N -0.72 -7.08 4.89 -52.47 -0.26 -7.34 16 12 C 0.14 1.59 3.36 -66.55 -0.22 1.36 16 13 H 0.09 1.05 7.64 -51.93 -0.40 0.65 16 14 C -0.13 -1.65 6.78 -25.34 -0.17 -1.83 16 15 C 0.04 0.54 5.80 -2.17 -0.01 0.53 16 16 N -0.48 -7.19 5.06 -231.40 -1.17 -8.37 16 17 C 0.03 0.50 5.30 -4.97 -0.03 0.47 16 18 C 0.45 10.04 7.59 -10.99 -0.08 9.96 16 19 O -0.56 -14.58 14.42 5.54 0.08 -14.50 16 20 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 21 C -0.30 -8.51 10.16 -14.94 -0.15 -8.66 16 22 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 C 0.02 0.23 6.09 -2.18 -0.01 0.22 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 39 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 42 H 0.41 3.48 7.98 -40.82 -0.33 3.16 16 43 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 46 H 0.04 0.57 7.83 -51.93 -0.41 0.17 16 47 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 48 H 0.09 1.25 8.13 -51.93 -0.42 0.82 16 49 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.06 0.55 8.00 -51.93 -0.42 0.14 16 52 H 0.09 0.84 7.99 -51.93 -0.41 0.42 16 LS Contribution 415.65 15.07 6.26 6.26 Total: -1.00 -34.38 415.65 -8.14 -42.52 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -9.07 Total: 10.29 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 0.30 Total: 6.85 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.71 Total: -54.41 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.21 Total: -25.93 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.38 -8.14 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665585190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.257 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds