Wall clock time and date at job start Wed Apr 1 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47346 * 305.00346 * 6 5 4 8 8 C 1.53004 * 109.47236 * 65.00086 * 6 5 4 9 9 C 1.50699 * 109.47337 * 185.00273 * 6 5 4 10 10 O 1.21276 * 119.99979 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99964 * 179.97438 * 9 6 5 12 12 C 1.46502 * 119.99977 * 179.97438 * 11 9 6 13 13 H 1.09001 * 110.28674 * 35.67922 * 12 11 9 14 14 C 1.54258 * 110.32619 * 273.55252 * 12 11 9 15 15 C 1.54389 * 105.06044 * 241.10208 * 14 12 11 16 16 N 1.48564 * 104.58917 * 23.85033 * 15 14 12 17 17 C 1.46904 * 110.99563 * 200.95790 * 16 15 14 18 18 C 1.50706 * 109.47370 * 290.12992 * 17 16 15 19 19 O 1.21294 * 119.99642 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99886 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00026 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99650 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00247 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00011 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00187 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47185 * 89.99490 * 25 23 21 27 27 H 1.48493 * 109.47310 * 210.00003 * 25 23 21 28 28 H 1.48501 * 109.46768 * 330.00186 * 25 23 21 29 29 C 1.48555 * 104.22801 * 320.51953 * 16 15 14 30 30 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 36 36 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 39 39 H 1.09001 * 109.46917 * 300.00567 * 8 6 5 40 40 H 1.09004 * 109.46741 * 59.99889 * 8 6 5 41 41 H 1.09000 * 109.47403 * 180.02562 * 8 6 5 42 42 H 0.97004 * 120.00146 * 0.02562 * 11 9 6 43 43 H 1.09001 * 110.32653 * 359.97438 * 14 12 11 44 44 H 1.09003 * 110.32282 * 122.10600 * 14 12 11 45 45 H 1.08993 * 110.41208 * 142.62717 * 15 14 12 46 46 H 1.09006 * 110.40853 * 264.95790 * 15 14 12 47 47 H 1.08992 * 109.46981 * 50.13366 * 17 16 15 48 48 H 1.08998 * 109.46864 * 170.12965 * 17 16 15 49 49 H 0.97000 * 120.00134 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99744 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.41100 * 280.70835 * 29 16 15 52 52 H 1.08997 * 110.41458 * 158.26371 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0000 7 1 5.9987 1.8455 0.8421 8 6 6.1433 1.8129 -1.3071 9 6 6.2956 3.8328 0.1233 10 8 5.5825 4.8106 0.2028 11 7 7.6359 3.9727 0.1451 12 6 8.2314 5.3059 0.2644 13 1 7.6219 5.9354 0.9127 14 6 8.3779 5.9538 -1.1278 15 6 9.8937 6.1880 -1.3038 16 7 10.5328 5.1995 -0.3975 17 6 11.9068 5.6003 -0.0664 18 6 12.7790 5.4603 -1.2874 19 8 12.3028 5.0658 -2.3308 20 7 14.0879 5.7743 -1.2200 21 6 14.8815 5.6464 -2.3306 22 1 14.4576 5.2944 -3.2596 23 6 16.2310 5.9696 -2.2611 24 7 16.9916 5.8475 -3.3258 25 14 16.9643 6.5777 -0.6543 26 1 17.4557 5.4199 0.1352 27 1 18.0951 7.4961 -0.9424 28 1 15.9249 7.3006 0.1219 29 6 9.6709 5.2030 0.8125 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 3.8364 3.1227 -0.8904 38 1 3.8359 3.1237 0.8896 39 1 5.7001 0.8211 -1.3963 40 1 5.8275 2.4289 -2.1492 41 1 7.2298 1.7264 -1.3069 42 1 8.2062 3.1907 0.0812 43 1 8.0071 5.2798 -1.9000 44 1 7.8403 6.9014 -1.1628 45 1 10.1894 6.0036 -2.3365 46 1 10.1582 7.2035 -1.0089 47 1 11.9122 6.6380 0.2669 48 1 12.2899 4.9612 0.7291 49 1 14.4686 6.0901 -0.3856 50 1 17.9339 6.0728 -3.2771 51 1 9.9009 6.0637 1.4406 52 1 9.7990 4.2771 1.3732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665585190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:54 Heat of formation + Delta-G solvation = -148.428407 kcal Electronic energy + Delta-G solvation = -29435.612653 eV Core-core repulsion = 25240.788145 eV Total energy + Delta-G solvation = -4194.824508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30982 -40.46335 -39.20902 -38.85363 -36.49635 -36.01809 -35.28796 -33.74542 -32.71612 -31.71393 -29.53872 -28.27245 -27.95326 -26.52551 -25.84003 -24.59091 -22.49907 -22.39191 -21.49293 -21.21417 -20.75712 -20.17711 -18.15308 -17.69849 -17.59616 -17.22135 -17.12464 -16.88122 -16.53262 -16.28625 -16.13147 -15.94216 -15.56240 -15.27209 -15.06424 -14.87620 -14.54612 -14.43802 -14.28078 -13.95983 -13.74166 -13.33077 -13.18811 -13.16335 -13.04646 -12.81679 -12.72822 -12.64025 -12.56715 -12.39969 -12.28789 -12.13638 -12.05165 -11.96794 -11.86888 -11.71573 -11.54582 -11.46997 -10.70423 -10.60803 -10.41816 -10.22369 -10.04226 -9.38000 -8.39756 -6.00471 1.30935 1.36775 1.45402 1.67702 1.99087 2.21529 2.24263 2.66349 2.85181 3.16007 3.26782 3.50894 3.71899 3.77641 3.91258 3.94005 4.12156 4.18235 4.19895 4.26623 4.30219 4.40270 4.41672 4.47155 4.51643 4.51707 4.53678 4.54433 4.65350 4.69517 4.73110 4.78856 4.85150 4.86636 4.88568 5.01715 5.04773 5.07049 5.15188 5.19478 5.37535 5.43076 5.53973 5.55124 5.85744 5.90171 6.01865 6.23013 6.61333 6.61979 6.90820 7.29646 7.42384 8.00393 8.78032 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.001592 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.084612 B =17578.366408 C =17952.351022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.090 4.090 6 C -0.102 4.102 7 H 0.122 0.878 8 C -0.146 4.146 9 C 0.515 3.485 10 O -0.583 6.583 11 N -0.709 5.709 12 C 0.148 3.852 13 H 0.096 0.904 14 C -0.125 4.125 15 C 0.039 3.961 16 N -0.505 5.505 17 C 0.043 3.957 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.231 1.231 29 C 0.030 3.970 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.413 0.587 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 -6.617 16.388 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.150 4.150 5 C -0.129 4.129 6 C -0.123 4.123 7 H 0.140 0.860 8 C -0.203 4.203 9 C 0.303 3.697 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.042 3.958 13 H 0.114 0.886 14 C -0.164 4.164 15 C -0.090 4.090 16 N -0.230 5.230 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.154 1.154 29 C -0.098 4.098 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.250 0.750 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.144 0.856 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.263 -6.867 15.403 32.058 hybrid contribution 1.025 1.200 0.143 1.584 sum -26.238 -5.668 15.546 31.020 Atomic orbital electron populations 1.22912 0.79724 1.03759 1.00729 1.87821 1.21311 1.28989 1.95597 1.22625 0.94506 0.84197 1.00654 1.21512 0.92674 0.96902 1.03920 1.21199 0.92628 0.96300 1.02736 1.21303 0.96303 0.92644 1.02062 0.86000 1.21853 1.02120 1.01610 0.94732 1.21162 0.82132 0.91971 0.74416 1.90669 1.61892 1.42257 1.51487 1.46081 1.06598 1.09615 1.73732 1.21581 0.93741 0.84553 0.95898 0.88591 1.22679 0.94641 1.01366 0.97727 1.23041 0.93874 0.93698 0.98350 1.65095 1.00241 1.46037 1.11636 1.22037 0.89445 1.02388 0.94983 1.20899 0.82495 0.81535 0.91139 1.90541 1.74083 1.50602 1.33875 1.42027 1.08511 1.61323 1.11663 1.18987 0.91565 1.43932 0.91133 0.92813 1.26101 0.95681 0.97116 1.02441 1.69813 1.07303 1.49038 1.31574 0.85367 0.79262 0.79371 0.77517 1.18073 1.20245 1.15398 1.23506 0.90029 1.04173 0.92077 0.93439 0.88567 0.93272 0.92821 0.93087 0.90495 0.90432 0.92351 0.91714 0.89585 0.93346 0.91460 0.74978 0.92069 0.90275 0.92524 0.93407 0.90041 0.85602 0.77516 0.91229 0.90284 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.83 10.70 -148.98 -1.59 -8.43 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.11 -1.38 5.34 30.59 0.16 -1.22 16 5 C -0.09 -1.31 4.03 30.59 0.12 -1.19 16 6 C -0.10 -1.39 2.72 -11.54 -0.03 -1.42 16 7 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 8 C -0.15 -1.87 8.84 71.98 0.64 -1.23 16 9 C 0.52 10.32 7.15 87.66 0.63 10.95 16 10 O -0.58 -16.16 15.62 -3.02 -0.05 -16.20 16 11 N -0.71 -12.69 4.89 -438.30 -2.14 -14.84 16 12 C 0.15 2.93 3.36 45.89 0.15 3.09 16 13 H 0.10 1.93 7.64 -2.39 -0.02 1.91 16 14 C -0.12 -3.06 6.78 31.49 0.21 -2.85 16 15 C 0.04 1.14 5.80 86.45 0.50 1.64 16 16 N -0.51 -13.91 5.06 -886.02 -4.49 -18.40 16 17 C 0.04 1.23 5.30 85.56 0.45 1.68 16 18 C 0.45 19.84 7.59 87.66 0.66 20.51 16 19 O -0.61 -33.07 14.42 -3.07 -0.04 -33.11 16 20 N -0.59 -27.39 5.09 -306.98 -1.56 -28.96 16 21 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 24 N -0.94 -56.35 13.96 21.66 0.30 -56.05 16 25 Si 0.96 38.22 27.74 68.60 1.90 40.12 16 26 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 29 C 0.03 0.53 6.09 86.45 0.53 1.06 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.93 6.56 -2.39 -0.02 0.91 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.05 7.96 -2.39 -0.02 1.03 16 39 H 0.09 0.86 6.56 -2.39 -0.02 0.84 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.84 7.57 -2.39 -0.02 0.82 16 42 H 0.41 6.14 7.98 -92.71 -0.74 5.40 16 43 H 0.06 1.67 7.95 -2.39 -0.02 1.66 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 2.19 6.91 -2.39 -0.02 2.17 16 46 H 0.05 1.31 7.83 -2.38 -0.02 1.30 16 47 H 0.08 1.92 7.88 -2.39 -0.02 1.90 16 48 H 0.13 2.80 8.13 -2.39 -0.02 2.78 16 49 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 50 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 51 H 0.08 1.13 8.00 -2.38 -0.02 1.11 16 52 H 0.11 1.55 7.99 -2.39 -0.02 1.53 16 Total: -1.00 -81.65 415.65 -1.06 -82.71 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.41 Total: 37.94 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.03 Total: 15.20 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -7.89 Total: -118.24 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -1.69 Total: -57.74 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.12 kcal Total: -81.65 -1.06 -82.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665585190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.718 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds