Wall clock time and date at job start Wed Apr 1 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.52989 * 109.47253 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47113 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46984 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47486 * 55.00077 * 6 5 4 8 8 C 1.52997 * 109.47269 * 294.99741 * 6 5 4 9 9 C 1.50706 * 109.46573 * 175.00011 * 6 5 4 10 10 O 1.21274 * 120.00042 * 359.72068 * 9 6 5 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 6 5 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 6 13 13 H 1.09002 * 110.28431 * 35.67456 * 12 11 9 14 14 C 1.54260 * 110.32733 * 273.55052 * 12 11 9 15 15 C 1.54373 * 105.06169 * 241.09979 * 14 12 11 16 16 N 1.48556 * 104.59366 * 23.85515 * 15 14 12 17 17 C 1.46907 * 111.00202 * 200.95945 * 16 15 14 18 18 C 1.50703 * 109.46687 * 290.12603 * 17 16 15 19 19 O 1.21290 * 120.00144 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99463 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99649 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99747 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99990 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46961 * 90.00128 * 25 23 21 27 27 H 1.48493 * 109.47434 * 210.00288 * 25 23 21 28 28 H 1.48494 * 109.47149 * 330.00558 * 25 23 21 29 29 C 1.48565 * 104.22244 * 320.51222 * 16 15 14 30 30 H 1.09005 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47611 * 300.00426 * 1 2 3 32 32 H 1.09003 * 109.46956 * 60.00497 * 1 2 3 33 33 H 1.08999 * 109.47256 * 59.99259 * 3 2 1 34 34 H 1.09001 * 109.46359 * 299.99598 * 3 2 1 35 35 H 1.08999 * 109.47464 * 59.99546 * 4 3 2 36 36 H 1.09001 * 109.47240 * 299.99218 * 4 3 2 37 37 H 1.08997 * 109.46604 * 59.99609 * 5 4 3 38 38 H 1.09001 * 109.46642 * 299.99845 * 5 4 3 39 39 H 1.09000 * 109.47140 * 300.00547 * 8 6 5 40 40 H 1.09001 * 109.47230 * 59.99691 * 8 6 5 41 41 H 1.09001 * 109.47375 * 180.02562 * 8 6 5 42 42 H 0.96999 * 120.00043 * 0.02562 * 11 9 6 43 43 H 1.09001 * 110.32462 * 359.97438 * 14 12 11 44 44 H 1.08997 * 110.32161 * 122.10057 * 14 12 11 45 45 H 1.09006 * 110.41199 * 142.63074 * 15 14 12 46 46 H 1.09000 * 110.41278 * 264.95615 * 15 14 12 47 47 H 1.09002 * 109.47053 * 50.11682 * 17 16 15 48 48 H 1.08991 * 109.47550 * 170.12475 * 17 16 15 49 49 H 0.97001 * 120.00423 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99267 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.41246 * 280.71045 * 29 16 15 52 52 H 1.09001 * 110.40806 * 158.26108 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4614 0.0013 7 1 5.9994 1.8444 -0.8398 8 6 6.1423 1.8145 1.3095 9 6 6.2956 3.8327 -0.1232 10 8 5.5826 4.8098 -0.2100 11 7 7.6360 3.9726 -0.1432 12 6 8.2316 5.3055 -0.2647 13 1 7.6298 6.0387 0.2723 14 6 8.3595 5.7019 -1.7501 15 6 9.8725 5.9001 -1.9835 16 7 10.5243 5.0831 -0.9278 17 6 11.9021 5.5336 -0.6890 18 6 12.7586 5.1828 -1.8783 19 8 12.2695 4.6131 -2.8309 20 7 14.0679 5.5021 -1.8833 21 6 14.8472 5.1825 -2.9651 22 1 14.4120 4.6745 -3.8129 23 6 16.1971 5.5121 -2.9706 24 7 16.7268 6.1298 -1.9386 25 14 17.2591 5.0761 -4.4441 26 1 17.2365 6.1958 -5.4192 27 1 18.6546 4.8384 -3.9956 28 1 16.7304 3.8474 -5.0890 29 6 9.6782 5.2976 0.2743 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8462 -0.8901 35 1 3.8574 0.6434 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8358 3.1237 0.8895 38 1 3.8365 3.1226 -0.8905 39 1 5.8259 2.4315 2.1506 40 1 5.6991 0.8227 1.3996 41 1 7.2289 1.7287 1.3106 42 1 8.2063 3.1907 -0.0779 43 1 7.9795 4.9045 -2.3888 44 1 7.8204 6.6296 -1.9420 45 1 10.1551 5.5390 -2.9724 46 1 10.1398 6.9510 -1.8727 47 1 11.9107 6.6135 -0.5410 48 1 12.2962 5.0418 0.2003 49 1 14.4591 5.9574 -1.1213 50 1 17.6692 6.3596 -1.9423 51 1 9.9154 6.2539 0.7404 52 1 9.8145 4.4828 0.9854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665585191.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:57 Heat of formation + Delta-G solvation = -153.149355 kcal Electronic energy + Delta-G solvation = -29342.844356 eV Core-core repulsion = 25147.815132 eV Total energy + Delta-G solvation = -4195.029224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29991 -40.37176 -39.16146 -38.84060 -36.49061 -35.98211 -35.27136 -33.29911 -32.67575 -31.66345 -29.53375 -28.17732 -27.91855 -26.51467 -26.01196 -24.59978 -22.53117 -22.40834 -21.47029 -20.96603 -20.76371 -19.85722 -18.12989 -17.68788 -17.59443 -17.24294 -17.12377 -16.80281 -16.53890 -16.24521 -16.09059 -15.88597 -15.58888 -15.44115 -15.16673 -14.89028 -14.58454 -14.23713 -14.04058 -13.75334 -13.51266 -13.35620 -13.16154 -13.11221 -13.00086 -12.81838 -12.72049 -12.63608 -12.56433 -12.40055 -12.28147 -12.14222 -12.11274 -12.04774 -11.86035 -11.71071 -11.54671 -11.46388 -10.70296 -10.60822 -10.34549 -10.04023 -9.98164 -9.37875 -8.45359 -5.93575 1.38308 1.42201 1.54558 1.68317 2.08220 2.20611 2.29395 2.82209 2.85077 3.21711 3.38938 3.51517 3.72279 3.80534 3.90973 3.94662 4.14128 4.19582 4.26435 4.28141 4.31443 4.40716 4.45348 4.49932 4.51732 4.53681 4.55101 4.55459 4.65968 4.69957 4.73204 4.78086 4.85280 4.87519 4.89263 5.03277 5.05767 5.07163 5.15239 5.19730 5.37684 5.42216 5.44310 5.54763 5.83521 5.90116 6.08291 6.22998 6.61490 6.62751 7.15106 7.29495 7.58970 8.15200 8.72071 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.001564 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.624148 B =17899.343189 C =18347.397380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.090 4.090 6 C -0.105 4.105 7 H 0.111 0.889 8 C -0.143 4.143 9 C 0.516 3.484 10 O -0.583 6.583 11 N -0.708 5.708 12 C 0.149 3.851 13 H 0.095 0.905 14 C -0.124 4.124 15 C 0.039 3.961 16 N -0.502 5.502 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.028 3.972 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.115 0.885 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.074 0.926 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.546 -6.876 10.809 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.150 4.150 5 C -0.128 4.128 6 C -0.127 4.127 7 H 0.129 0.871 8 C -0.200 4.200 9 C 0.304 3.696 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.043 3.957 13 H 0.113 0.887 14 C -0.163 4.163 15 C -0.089 4.089 16 N -0.226 5.226 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.099 4.099 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.250 0.750 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.133 0.867 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.009 -7.226 10.020 28.793 hybrid contribution 1.062 1.066 -0.412 1.560 sum -24.947 -6.160 9.608 27.434 Atomic orbital electron populations 1.22913 0.79712 1.03763 1.00736 1.87821 1.21325 1.28993 1.95598 1.22620 0.94460 0.84200 1.00673 1.21514 0.92719 0.96918 1.03873 1.21198 0.92609 0.96281 1.02749 1.21321 0.96352 0.92575 1.02406 0.87061 1.21843 1.02321 1.01580 0.94287 1.21164 0.82079 0.91971 0.74419 1.90667 1.61865 1.42269 1.51502 1.46074 1.06630 1.09608 1.73678 1.21555 0.93463 0.85397 0.95242 0.88669 1.22678 0.94615 1.02117 0.96919 1.23031 0.93794 0.95187 0.96856 1.65116 1.00085 1.51556 1.05877 1.21937 0.89691 1.00206 0.96664 1.20778 0.82836 0.83434 0.90061 1.90485 1.73581 1.47159 1.38978 1.41921 1.07696 1.53001 1.18649 1.19638 0.91457 1.37163 0.97893 0.90452 1.25985 0.97794 0.96410 1.00932 1.69673 1.14608 1.40850 1.31033 0.84963 0.77339 0.78599 0.77656 1.19778 1.19538 1.19861 1.23504 0.90414 1.03121 0.92908 0.88564 0.93220 0.93473 0.92669 0.93188 0.91034 0.90003 0.91652 0.92367 0.92407 0.89780 0.91027 0.74989 0.91803 0.90205 0.92173 0.93835 0.91086 0.86693 0.77030 0.91367 0.90758 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.97 10.70 -148.98 -1.59 -8.56 16 3 C 0.06 0.79 5.94 71.98 0.43 1.22 16 4 C -0.11 -1.44 5.34 30.59 0.16 -1.28 16 5 C -0.09 -1.35 4.03 30.60 0.12 -1.22 16 6 C -0.11 -1.50 2.73 -11.54 -0.03 -1.53 16 7 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.14 -1.47 8.84 71.98 0.64 -0.83 16 9 C 0.52 10.72 7.15 87.66 0.63 11.35 16 10 O -0.58 -16.57 15.62 -3.01 -0.05 -16.62 16 11 N -0.71 -13.43 4.89 -438.30 -2.14 -15.57 16 12 C 0.15 3.18 3.36 45.89 0.15 3.34 16 13 H 0.10 2.06 7.65 -2.39 -0.02 2.04 16 14 C -0.12 -3.17 6.78 31.49 0.21 -2.96 16 15 C 0.04 1.23 5.80 86.45 0.50 1.73 16 16 N -0.50 -15.02 5.06 -886.03 -4.49 -19.51 16 17 C 0.05 1.52 5.30 85.56 0.45 1.97 16 18 C 0.44 20.59 7.58 87.66 0.66 21.25 16 19 O -0.62 -33.62 14.42 -3.06 -0.04 -33.66 16 20 N -0.57 -29.08 5.29 -306.98 -1.62 -30.71 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 24 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 25 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 C 0.03 0.58 6.10 86.45 0.53 1.11 16 30 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.94 6.56 -2.39 -0.02 0.92 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.05 7.95 -2.39 -0.02 1.03 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.67 6.56 -2.39 -0.02 0.66 16 41 H 0.07 0.63 7.56 -2.39 -0.02 0.61 16 42 H 0.41 6.57 7.97 -92.71 -0.74 5.83 16 43 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 2.37 6.91 -2.38 -0.02 2.35 16 46 H 0.04 1.30 7.83 -2.39 -0.02 1.28 16 47 H 0.07 2.06 7.88 -2.39 -0.02 2.04 16 48 H 0.12 3.20 8.13 -2.39 -0.02 3.18 16 49 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.07 1.32 8.00 -2.39 -0.02 1.30 16 52 H 0.11 1.80 7.99 -2.39 -0.02 1.79 16 Total: -1.00 -72.86 418.76 -1.19 -74.06 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.55 Total: 37.15 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.99 Total: 17.59 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -7.97 Total: -114.78 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -1.69 Total: -58.84 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.86 -1.19 -74.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665585191.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.094 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds