Wall clock time and date at job start Wed Apr 1 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99999 * 2 1 4 4 H 1.09002 * 109.47196 * 30.00056 * 3 2 1 5 5 C 1.53004 * 109.47039 * 269.99844 * 3 2 1 6 6 C 1.53001 * 109.47060 * 150.00080 * 3 2 1 7 7 C 1.52996 * 109.47105 * 294.99846 * 6 3 2 8 8 C 1.50703 * 109.47106 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99921 * 180.02562 * 8 7 6 11 11 C 1.47527 * 125.63664 * 5.10032 * 10 8 7 12 12 C 1.54905 * 104.78240 * 155.84821 * 11 10 8 13 13 C 1.55159 * 101.61810 * 37.00297 * 12 11 10 14 14 C 1.47019 * 125.64641 * 185.06187 * 10 8 7 15 15 H 1.09000 * 109.88146 * 300.50880 * 14 10 8 16 16 C 1.53000 * 109.88292 * 61.67374 * 14 10 8 17 17 N 1.46896 * 109.47194 * 182.30010 * 16 14 10 18 18 C 1.46906 * 111.00225 * 185.06213 * 17 16 14 19 19 C 1.50693 * 109.47166 * 180.02562 * 18 17 16 20 20 O 1.21291 * 120.00223 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00042 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00324 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99906 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00006 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00291 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99859 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46933 * 59.99506 * 26 24 22 28 28 H 1.48497 * 109.47088 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47261 * 299.99870 * 26 24 22 30 30 H 1.08998 * 109.46943 * 299.99652 * 1 2 3 31 31 H 1.09003 * 109.47108 * 60.00379 * 1 2 3 32 32 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46974 * 60.00526 * 5 3 2 34 34 H 1.09006 * 109.47036 * 179.97438 * 5 3 2 35 35 H 1.08994 * 109.47482 * 299.99903 * 5 3 2 36 36 H 1.09001 * 109.47355 * 175.00075 * 6 3 2 37 37 H 1.09001 * 109.47323 * 55.00035 * 6 3 2 38 38 H 1.08997 * 109.47096 * 60.00334 * 7 6 3 39 39 H 1.09001 * 109.47184 * 300.00273 * 7 6 3 40 40 H 1.08997 * 110.41005 * 37.01336 * 11 10 8 41 41 H 1.09004 * 110.37236 * 274.66201 * 11 10 8 42 42 H 1.09003 * 111.00266 * 278.90804 * 12 11 10 43 43 H 1.08996 * 111.00399 * 155.10014 * 12 11 10 44 44 H 1.08998 * 110.71473 * 82.84085 * 13 12 11 45 45 H 1.08997 * 110.72198 * 205.93932 * 13 12 11 46 46 H 1.08999 * 109.47417 * 302.30470 * 16 14 10 47 47 H 1.09007 * 109.47353 * 62.30449 * 16 14 10 48 48 H 1.00900 * 110.99668 * 61.11195 * 17 16 14 49 49 H 1.09002 * 109.46459 * 300.00407 * 18 17 16 50 50 H 1.09000 * 109.47050 * 60.00279 * 18 17 16 51 51 H 0.97005 * 119.99884 * 0.02562 * 21 19 18 52 52 H 0.97005 * 119.99885 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1383 0.9184 2.1954 8 6 4.4667 0.8775 2.9060 9 8 5.4892 1.1015 2.2935 10 7 4.5184 0.5908 4.2219 11 6 3.3715 0.1952 5.0613 12 6 3.9968 -0.5945 6.2381 13 6 5.3097 0.1955 6.4820 14 6 5.7272 0.6199 5.0583 15 1 6.4667 -0.0778 4.6653 16 6 6.3067 2.0357 5.0862 17 7 7.5436 2.0430 5.8786 18 6 8.0650 3.4082 6.0283 19 6 9.3315 3.3756 6.8442 20 8 9.7577 2.3191 7.2606 21 7 9.9901 4.5205 7.1123 22 6 11.1420 4.4910 7.8551 23 1 11.5215 3.5502 8.2258 24 6 11.8207 5.6714 8.1318 25 7 11.3587 6.8161 7.6812 26 14 13.3899 5.6312 9.1445 27 1 14.4011 4.7886 8.4571 28 1 13.9167 7.0113 9.2961 29 1 13.0996 5.0617 10.4849 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2568 1.8015 -1.9563 34 1 2.6606 2.7674 -1.4425 35 1 2.8829 1.0775 -1.9564 36 1 3.8427 2.2370 0.6444 37 1 3.9931 0.5051 0.2617 38 1 2.6545 -0.0553 2.2723 39 1 2.5041 1.6766 2.6549 40 1 2.6894 -0.4410 4.4974 41 1 2.8498 1.0778 5.4313 42 1 4.2082 -1.6240 5.9492 43 1 3.3523 -0.5620 7.1165 44 1 5.1234 1.0697 7.1059 45 1 6.0669 -0.4450 6.9341 46 1 6.5252 2.3590 4.0685 47 1 5.5831 2.7157 5.5360 48 1 8.2373 1.4336 5.4716 49 1 8.2778 3.8257 5.0441 50 1 7.3231 4.0271 6.5329 51 1 9.6486 5.3656 6.7802 52 1 11.8327 7.6402 7.8741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666411729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:27 Heat of formation + Delta-G solvation = -126.897427 kcal Electronic energy + Delta-G solvation = -29671.325001 eV Core-core repulsion = 25477.434146 eV Total energy + Delta-G solvation = -4193.890855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43668 -38.87935 -38.23689 -37.63608 -35.20894 -34.07192 -33.77419 -31.94645 -31.20956 -30.65453 -29.89873 -27.14201 -26.77459 -25.33848 -24.61234 -23.26542 -22.39893 -21.54326 -20.80428 -19.40985 -18.84948 -17.84416 -17.36811 -17.27774 -16.68112 -16.00198 -15.68788 -15.47395 -15.36125 -15.19141 -14.91483 -14.47824 -14.24349 -13.83960 -13.74775 -13.63965 -13.52569 -13.34706 -13.24070 -12.99784 -12.78900 -12.65362 -12.28166 -12.18688 -11.90977 -11.74824 -11.66925 -11.55105 -11.45970 -11.44926 -11.31660 -11.03062 -10.98624 -10.83065 -10.79879 -10.41637 -10.18134 -10.09159 -9.88048 -9.46445 -8.83961 -8.38855 -7.99604 -7.91672 -6.38090 -3.78897 2.50128 2.74994 3.22836 3.28050 3.32743 3.36049 3.95491 4.10557 4.19012 4.35020 4.39905 4.50939 4.55279 4.68414 4.72175 4.82991 4.87151 4.91643 4.95359 4.99441 5.11674 5.13270 5.19443 5.21503 5.27155 5.28946 5.31093 5.35749 5.44624 5.49674 5.57921 5.67265 5.69247 5.76047 5.83347 5.84924 5.89508 5.95330 5.98831 6.04564 6.21752 6.27644 6.34871 6.79280 7.22914 7.38505 7.58301 7.70297 8.04448 8.09884 8.65278 9.21344 9.58307 10.09990 10.79648 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.001786 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.338409 B =15672.248801 C =16816.750950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.133 4.133 8 C 0.526 3.474 9 O -0.536 6.536 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.138 4.138 13 C -0.112 4.112 14 C 0.141 3.859 15 H 0.075 0.925 16 C 0.051 3.949 17 N -0.664 5.664 18 C 0.053 3.947 19 C 0.442 3.558 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.350 0.650 49 H 0.043 0.957 50 H 0.084 0.916 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.336 -10.856 -12.707 31.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.315 3.685 9 O -0.413 6.413 10 N -0.352 5.352 11 C -0.023 4.023 12 C -0.176 4.176 13 C -0.150 4.150 14 C 0.038 3.962 15 H 0.094 0.906 16 C -0.080 4.080 17 N -0.296 5.296 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.169 0.831 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.632 -11.380 -12.224 30.593 hybrid contribution 0.583 1.106 -0.576 1.377 sum -25.050 -10.273 -12.800 29.948 Atomic orbital electron populations 1.22778 0.81323 1.02687 0.99866 1.87946 1.19404 1.27933 1.95085 1.22208 0.94829 0.84542 0.95784 0.92097 1.22269 1.02302 1.02016 0.96659 1.21480 0.95625 1.03958 0.92904 1.21622 0.95059 1.04359 0.96254 1.20419 0.91588 0.76187 0.80258 1.90727 1.36389 1.49153 1.65002 1.48651 1.10068 1.68490 1.08027 1.22356 0.88946 0.98775 0.92219 1.22841 0.97697 0.99332 0.97696 1.22564 0.96696 1.00826 0.94928 1.21486 0.86997 0.97086 0.90667 0.90648 1.22230 0.93179 0.96107 0.96447 1.60007 1.06697 1.09349 1.53594 1.21644 0.96856 0.90671 0.98842 1.19795 0.86489 0.85014 0.85918 1.90515 1.69354 1.30308 1.56527 1.41856 1.23233 1.07492 1.47519 1.19662 1.00072 0.95166 1.28007 0.87968 1.25261 0.99765 0.94678 0.98261 1.69609 1.40608 0.98158 1.46015 0.85911 0.81190 0.77046 0.80017 1.19936 1.21006 1.19900 0.94055 0.94194 0.89717 0.92544 0.91344 0.91545 0.89709 0.90124 0.88446 0.89296 0.90668 0.91270 0.90718 0.89799 0.89916 0.89473 0.94258 0.91261 0.83117 0.93900 0.89732 0.77468 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.08 9.88 -35.23 -0.35 -3.43 16 3 C 0.08 0.59 2.72 -26.73 -0.07 0.52 16 4 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 5 C -0.17 -1.13 9.53 37.16 0.35 -0.77 16 6 C -0.10 -0.88 4.21 -26.73 -0.11 -0.99 16 7 C -0.13 -1.08 4.69 -27.88 -0.13 -1.22 16 8 C 0.53 6.25 7.58 -10.98 -0.08 6.16 16 9 O -0.54 -8.54 15.18 5.56 0.08 -8.46 16 10 N -0.62 -6.57 3.07 -162.94 -0.50 -7.07 16 11 C 0.10 0.72 6.66 -2.48 -0.02 0.70 16 12 C -0.14 -1.00 7.08 -24.58 -0.17 -1.17 16 13 C -0.11 -1.16 6.22 -24.90 -0.15 -1.31 16 14 C 0.14 1.73 3.09 -66.95 -0.21 1.53 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.05 0.73 5.05 -3.83 -0.02 0.71 16 17 N -0.66 -11.35 5.83 -115.06 -0.67 -12.02 16 18 C 0.05 0.99 6.16 -4.98 -0.03 0.96 16 19 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 20 O -0.58 -16.15 15.78 5.55 0.09 -16.07 16 21 N -0.56 -14.70 5.29 -10.97 -0.06 -14.76 16 22 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 23 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 26 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.23 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 38 H 0.10 0.72 7.45 -51.93 -0.39 0.33 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.41 7.51 -51.93 -0.39 0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.91 7.81 -51.93 -0.41 0.51 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.63 6.96 -51.93 -0.36 0.27 16 47 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 48 H 0.35 6.32 8.48 -39.29 -0.33 5.99 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 51 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 52 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 422.78 15.07 6.37 6.37 Total: -1.00 -34.15 422.78 -8.48 -42.63 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -9.26 Total: 11.81 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.12 Total: 8.87 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.50 Total: -58.10 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.18 Total: -27.95 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.15 -8.48 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666411729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.267 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds