Wall clock time and date at job start Wed Apr 1 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00291 * 2 1 4 4 H 1.09005 * 109.46433 * 330.00212 * 3 2 1 5 5 C 1.52997 * 109.47043 * 89.99624 * 3 2 1 6 6 C 1.52995 * 109.47105 * 210.00102 * 3 2 1 7 7 C 1.52999 * 109.47446 * 64.99995 * 6 3 2 8 8 C 1.50698 * 109.47298 * 179.97438 * 7 6 3 9 9 O 1.21278 * 120.00172 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.64782 * 354.76569 * 10 8 7 12 12 C 1.55132 * 104.72581 * 155.81724 * 11 10 8 13 13 C 1.55156 * 101.48072 * 37.29544 * 12 11 10 14 14 C 1.47017 * 125.65231 * 175.07332 * 10 8 7 15 15 H 1.09001 * 109.88471 * 300.44297 * 14 10 8 16 16 C 1.53005 * 109.88010 * 61.60462 * 14 10 8 17 17 N 1.46900 * 109.46996 * 184.52366 * 16 14 10 18 18 C 1.46899 * 111.00035 * 185.03670 * 17 16 14 19 19 C 1.50702 * 109.47376 * 180.02562 * 18 17 16 20 20 O 1.21289 * 119.99810 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00163 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99883 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00192 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99611 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00530 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99768 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47222 * 59.99835 * 26 24 22 28 28 H 1.48496 * 109.47080 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47081 * 299.99591 * 26 24 22 30 30 H 1.09000 * 109.46870 * 59.99771 * 1 2 3 31 31 H 1.08995 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46901 * 299.99991 * 1 2 3 33 33 H 1.08993 * 109.47446 * 300.00422 * 5 3 2 34 34 H 1.09005 * 109.47026 * 60.00951 * 5 3 2 35 35 H 1.09000 * 109.47294 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47190 * 184.99843 * 6 3 2 37 37 H 1.09003 * 109.47475 * 304.99543 * 6 3 2 38 38 H 1.09002 * 109.46801 * 300.00085 * 7 6 3 39 39 H 1.09003 * 109.47152 * 59.99350 * 7 6 3 40 40 H 1.09001 * 110.36959 * 274.74632 * 11 10 8 41 41 H 1.09004 * 110.36791 * 37.06996 * 11 10 8 42 42 H 1.09002 * 111.18782 * 279.19596 * 12 11 10 43 43 H 1.08990 * 110.94138 * 155.28633 * 12 11 10 44 44 H 1.09010 * 110.71860 * 205.97040 * 13 12 11 45 45 H 1.08998 * 110.72020 * 82.70216 * 13 12 11 46 46 H 1.08996 * 109.47220 * 304.52165 * 16 14 10 47 47 H 1.08997 * 109.47018 * 64.52510 * 16 14 10 48 48 H 1.00907 * 111.00223 * 61.08567 * 17 16 14 49 49 H 1.09002 * 109.47409 * 300.00436 * 18 17 16 50 50 H 1.08998 * 109.47188 * 60.00000 * 18 17 16 51 51 H 0.97001 * 119.99541 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00225 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3590 1.2632 -0.7213 7 6 3.1384 0.9184 -2.1955 8 6 4.4667 0.8774 -2.9060 9 8 5.4891 1.1023 -2.2937 10 7 4.5185 0.5907 -4.2219 11 6 3.3730 0.1927 -5.0603 12 6 3.7861 0.5834 -6.5036 13 6 5.3005 0.2460 -6.4934 14 6 5.7277 0.6171 -5.0577 15 1 6.1640 1.6159 -5.0472 16 6 6.7425 -0.4027 -4.5368 17 7 7.9870 -0.2936 -5.3097 18 6 8.9434 -1.3375 -4.9176 19 6 10.2049 -1.1936 -5.7293 20 8 10.2979 -0.3088 -6.5537 21 7 11.2293 -2.0487 -5.5400 22 6 12.3771 -1.9174 -6.2781 23 1 12.4603 -1.1290 -7.0116 24 6 13.4334 -2.7987 -6.0825 25 7 13.3325 -3.7576 -5.1897 26 14 14.9972 -2.6203 -7.0887 27 1 15.5948 -1.2834 -6.8419 28 1 15.9641 -3.6752 -6.6919 29 1 14.6759 -2.7602 -8.5317 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8014 1.9563 34 1 2.8830 1.0775 1.9563 35 1 2.6615 2.7669 1.4425 36 1 3.8428 2.2369 -0.6444 37 1 3.9932 0.5051 -0.2617 38 1 2.6545 -0.0553 -2.2724 39 1 2.5041 1.6765 -2.6550 40 1 3.2059 -0.8821 -4.9889 41 1 2.4772 0.7374 -4.7620 42 1 3.6238 1.6457 -6.6860 43 1 3.2559 -0.0226 -7.2381 44 1 5.8358 0.8527 -7.2240 45 1 5.4604 -0.8158 -6.6812 46 1 6.9495 -0.2046 -3.4851 47 1 6.3352 -1.4079 -4.6439 48 1 8.3940 0.6246 -5.2123 49 1 9.1795 -1.2347 -3.8585 50 1 8.5045 -2.3187 -5.0983 51 1 11.1547 -2.7565 -4.8809 52 1 14.0698 -4.3730 -5.0534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666411730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:29 Heat of formation + Delta-G solvation = -151.741362 kcal Electronic energy + Delta-G solvation = -29690.760278 eV Core-core repulsion = 25495.792109 eV Total energy + Delta-G solvation = -4194.968169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32928 -40.17753 -39.41840 -38.56869 -36.63916 -35.80883 -34.70700 -33.30545 -32.75418 -31.50810 -30.74909 -28.28274 -27.53194 -26.42187 -25.91809 -24.49201 -23.26304 -22.14916 -21.65724 -21.16849 -20.04810 -19.74196 -18.22836 -18.00002 -17.75520 -17.27057 -16.97202 -16.52970 -16.28926 -16.09169 -15.96839 -15.91576 -15.52527 -15.26862 -14.97747 -14.89481 -14.44556 -14.17125 -14.02072 -13.99673 -13.62319 -13.47703 -13.37854 -13.34523 -13.22561 -13.07183 -12.86146 -12.65084 -12.46545 -12.44840 -12.23780 -12.12881 -12.07269 -11.96861 -11.84317 -11.58426 -11.53466 -11.51948 -10.88945 -10.50748 -10.40636 -10.04464 -9.70164 -9.41115 -8.47965 -5.97559 1.39227 1.40788 1.52437 1.61323 1.91196 2.01232 2.28620 2.89309 2.92621 3.18386 3.41233 3.54569 3.69639 3.79741 3.83693 3.91115 4.09424 4.21288 4.24016 4.25084 4.32659 4.34916 4.39997 4.47077 4.49612 4.51013 4.55642 4.61753 4.65091 4.69366 4.76906 4.79957 4.86774 4.92713 4.98004 5.02985 5.06244 5.08704 5.18306 5.22308 5.32644 5.36571 5.38983 5.44857 5.79369 6.02541 6.24655 6.35036 6.55601 6.57065 7.09559 7.16146 7.52305 8.07110 8.69311 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.001810 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.221039 B =15462.129111 C =16529.263113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.088 3.912 4 H 0.084 0.916 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.120 4.120 8 C 0.517 3.483 9 O -0.587 6.587 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.125 4.125 13 C -0.112 4.112 14 C 0.142 3.858 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.997 3.003 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.076 0.924 48 H 0.341 0.659 49 H 0.055 0.945 50 H 0.105 0.895 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.524 7.987 7.547 34.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.031 3.969 4 H 0.102 0.898 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.160 4.160 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.163 4.163 13 C -0.150 4.150 14 C 0.037 3.963 15 H 0.075 0.925 16 C -0.072 4.072 17 N -0.298 5.298 18 C -0.067 4.067 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.094 0.906 48 H 0.159 0.841 49 H 0.072 0.928 50 H 0.123 0.877 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.953 8.026 6.939 33.668 hybrid contribution 1.490 0.042 1.027 1.810 sum -30.463 8.067 7.966 32.505 Atomic orbital electron populations 1.22951 0.79807 1.03534 1.00907 1.87929 1.21148 1.28480 1.95221 1.22174 0.94094 0.84797 0.95846 0.89832 1.22276 1.02555 1.01902 0.96577 1.21428 0.96326 1.02555 0.93564 1.21611 0.93088 1.05969 0.95312 1.21184 0.92377 0.75180 0.80461 1.90702 1.38352 1.51595 1.66082 1.48744 1.10320 1.67632 1.08249 1.22685 0.88721 1.01225 0.89946 1.22873 0.94356 1.03038 0.96053 1.22520 0.96903 1.02600 0.92992 1.21396 0.85637 0.97630 0.91615 0.92535 1.22253 0.90182 1.00055 0.94703 1.60049 1.04937 1.06737 1.58095 1.21509 0.90685 0.97958 0.96516 1.20700 0.85930 0.83920 0.86729 1.90478 1.83104 1.37314 1.39710 1.41924 1.13517 1.29089 1.36388 1.19672 0.92878 1.15122 1.18922 0.90117 1.26104 1.02293 0.94807 0.98176 1.69675 1.34679 1.17487 1.34320 0.84939 0.76683 0.78163 0.78234 1.19711 1.19419 1.19493 0.92480 0.89146 0.93579 0.91463 0.93150 0.90720 0.90431 0.93027 0.87258 0.86212 0.90111 0.87614 0.89985 0.87571 0.90488 0.90654 0.95904 0.90556 0.84065 0.92754 0.87681 0.77050 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.42 16 2 O -0.41 -6.01 9.88 -148.98 -1.47 -7.48 16 3 C 0.09 1.09 2.72 30.59 0.08 1.17 16 4 H 0.08 0.65 7.79 -2.38 -0.02 0.63 16 5 C -0.18 -2.10 9.53 71.98 0.69 -1.42 16 6 C -0.10 -1.69 4.21 30.59 0.13 -1.56 16 7 C -0.12 -1.71 4.53 29.85 0.14 -1.58 16 8 C 0.52 11.97 7.67 87.66 0.67 12.64 16 9 O -0.59 -19.42 14.78 -3.02 -0.04 -19.46 16 10 N -0.62 -12.28 3.06 -787.61 -2.41 -14.69 16 11 C 0.10 1.05 6.75 86.93 0.59 1.63 16 12 C -0.13 -1.40 7.10 32.06 0.23 -1.17 16 13 C -0.11 -2.19 6.27 31.78 0.20 -1.99 16 14 C 0.14 3.47 3.13 45.34 0.14 3.61 16 15 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 16 C 0.06 1.73 5.07 86.30 0.44 2.17 16 17 N -0.67 -23.63 5.89 -517.93 -3.05 -26.68 16 18 C 0.07 2.54 6.16 85.56 0.53 3.07 16 19 C 0.44 22.18 7.82 87.66 0.69 22.86 16 20 O -0.62 -35.65 15.78 -3.06 -0.05 -35.70 16 21 N -0.57 -30.80 5.29 -306.98 -1.62 -32.42 16 22 C -0.34 -19.73 9.68 84.04 0.81 -18.91 16 23 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -51.12 13.05 21.66 0.28 -50.84 16 26 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 30 H 0.06 0.27 8.08 -2.39 -0.02 0.25 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.30 7.87 -2.39 -0.02 0.28 16 33 H 0.07 0.65 7.87 -2.39 -0.02 0.63 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.11 1.36 7.82 -2.39 -0.02 1.34 16 39 H 0.12 0.96 7.96 -2.39 -0.02 0.94 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.56 7.48 -2.38 -0.02 0.54 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.07 1.59 7.78 -2.39 -0.02 1.57 16 46 H 0.02 0.79 6.57 -2.39 -0.02 0.77 16 47 H 0.08 2.14 8.02 -2.39 -0.02 2.12 16 48 H 0.34 13.01 8.48 -89.69 -0.76 12.25 16 49 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.11 3.63 8.14 -2.39 -0.02 3.62 16 51 H 0.40 20.35 7.90 -92.71 -0.73 19.62 16 52 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -77.09 422.25 0.10 -77.00 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.58 Total: 42.72 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 7.02 Total: 21.64 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.80 Total: -124.63 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -1.57 Total: -62.64 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.09 0.10 -77.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666411730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.746 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds