Wall clock time and date at job start Wed Apr 1 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.52198 * 2 1 4 4 C 1.53185 * 109.49781 * 239.91690 * 2 1 3 5 5 N 1.46926 * 108.77524 * 294.68361 * 4 2 1 6 6 C 1.34787 * 120.62918 * 126.11612 * 5 4 2 7 7 O 1.21276 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99759 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46665 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47235 * 60.00311 * 9 8 6 11 11 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 12 12 O 1.42893 * 109.47208 * 299.99863 * 9 8 6 13 13 C 1.46924 * 118.73991 * 306.39104 * 5 4 2 14 14 C 1.53194 * 108.77334 * 53.61035 * 13 5 4 15 15 C 1.53038 * 109.31101 * 305.36035 * 14 13 5 16 16 H 1.08993 * 109.45369 * 301.35673 * 15 14 13 17 17 N 1.46893 * 109.45862 * 181.38636 * 15 14 13 18 18 C 1.46898 * 111.00102 * 84.93663 * 17 15 14 19 19 C 1.50702 * 109.47395 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99982 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00050 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00318 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99659 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00337 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00196 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99718 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47380 * 90.00441 * 26 24 22 28 28 H 1.48502 * 109.47039 * 210.00004 * 26 24 22 29 29 H 1.48499 * 109.47502 * 329.99766 * 26 24 22 30 30 H 1.08991 * 109.47124 * 180.08553 * 1 2 3 31 31 H 1.09003 * 109.46930 * 300.08254 * 1 2 3 32 32 H 1.09003 * 109.46892 * 60.08020 * 1 2 3 33 33 H 1.09001 * 109.59106 * 174.89976 * 4 2 1 34 34 H 1.08998 * 109.70436 * 54.54049 * 4 2 1 35 35 H 1.08998 * 109.47136 * 299.99814 * 8 6 5 36 36 H 1.09001 * 109.47288 * 59.99840 * 8 6 5 37 37 H 1.08998 * 109.47425 * 59.99612 * 10 9 8 38 38 H 1.09000 * 109.47131 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.46591 * 299.99517 * 10 9 8 40 40 H 1.09009 * 109.46812 * 60.00264 * 11 9 8 41 41 H 1.09003 * 109.47171 * 179.97438 * 11 9 8 42 42 H 1.08998 * 109.47299 * 300.00059 * 11 9 8 43 43 H 0.96698 * 114.00179 * 299.99999 * 12 9 8 44 44 H 1.09004 * 109.58777 * 173.39544 * 13 5 4 45 45 H 1.08994 * 109.58607 * 293.81880 * 13 5 4 46 46 H 1.09005 * 109.49558 * 185.41228 * 14 13 5 47 47 H 1.08996 * 109.52408 * 65.33314 * 14 13 5 48 48 H 1.00904 * 111.00400 * 320.97933 * 17 15 14 49 49 H 1.09005 * 109.47082 * 299.99682 * 18 17 15 50 50 H 1.09005 * 109.47171 * 59.99696 * 18 17 15 51 51 H 0.97004 * 120.00056 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1694 6 6 0.9695 -2.7205 -2.1756 7 8 0.6723 -2.0764 -3.1592 8 6 0.5764 -4.1721 -2.0783 9 6 -0.1827 -4.5806 -3.3423 10 6 0.7145 -4.3761 -4.5647 11 6 -0.5813 -6.0546 -3.2438 12 8 -1.3569 -3.7769 -3.4734 13 6 2.0140 -2.9040 0.0309 14 6 1.5030 -2.1557 1.2661 15 6 2.0408 -0.7231 1.2484 16 1 3.1305 -0.7446 1.2352 17 7 1.5799 -0.0124 2.4485 18 6 2.4723 -0.2680 3.5870 19 6 1.9689 0.4762 4.7969 20 8 0.9656 1.1534 4.7184 21 7 2.6334 0.3894 5.9662 22 6 2.1752 1.0660 7.0671 23 1 1.2819 1.6689 6.9971 24 6 2.8606 0.9769 8.2725 25 7 2.4217 1.6259 9.3275 26 14 4.4061 -0.0654 8.3932 27 1 5.5915 0.7671 8.0661 28 1 4.5392 -0.5951 9.7741 29 1 4.3162 -1.1968 7.4356 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 3.1275 -0.6464 -1.2980 34 1 1.6028 -0.2738 -2.1402 35 1 1.4721 -4.7852 -1.9779 36 1 -0.0631 -4.3178 -1.2077 37 1 1.6102 -4.9892 -4.4646 38 1 0.1735 -4.6667 -5.4652 39 1 0.9988 -3.3262 -4.6350 40 1 -1.2204 -6.2007 -2.3729 41 1 -1.1226 -6.3455 -4.1441 42 1 0.3146 -6.6673 -3.1440 43 1 -1.9729 -3.8567 -2.7323 44 1 1.5554 -3.8919 -0.0136 45 1 3.0979 -3.0043 0.0869 46 1 1.8480 -2.6627 2.1672 47 1 0.4132 -2.1354 1.2547 48 1 0.6278 -0.2606 2.6725 49 1 2.4926 -1.3369 3.8000 50 1 3.4785 0.0732 3.3437 51 1 3.4355 -0.1524 6.0292 52 1 2.9004 1.5640 10.1689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667169517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:47 Heat of formation + Delta-G solvation = -118.330672 kcal Electronic energy + Delta-G solvation = -30901.022655 eV Core-core repulsion = 26707.503283 eV Total energy + Delta-G solvation = -4193.519373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89003 -39.22038 -38.32783 -37.40993 -35.19164 -33.97519 -33.28481 -32.68926 -31.69776 -31.05471 -29.12113 -27.65663 -27.22996 -26.50566 -24.58169 -23.42163 -22.90682 -21.17115 -20.05976 -19.51273 -18.86946 -18.24964 -17.61840 -17.03791 -16.18937 -16.01631 -15.56606 -15.48170 -15.32955 -15.08761 -14.81290 -14.64397 -14.33217 -14.11332 -13.94853 -13.71568 -13.41324 -13.07314 -12.90773 -12.77121 -12.58194 -12.55185 -12.45304 -12.32015 -12.15959 -12.07153 -11.85005 -11.80391 -11.75133 -11.64022 -11.20179 -11.12657 -11.08137 -10.76688 -10.63009 -10.53693 -10.40071 -10.00164 -9.72097 -9.60110 -8.85573 -8.61599 -8.21834 -8.14303 -6.33562 -3.85123 2.42222 2.70219 2.98766 3.04021 3.12256 3.70911 3.86688 4.01278 4.07754 4.15642 4.25333 4.38536 4.54268 4.60670 4.70051 4.75369 4.82141 4.90667 4.95127 4.97906 5.02878 5.13674 5.17340 5.19353 5.26320 5.36712 5.42201 5.45814 5.54976 5.58388 5.60020 5.61898 5.63663 5.67103 5.76690 5.78632 5.85648 5.95601 6.00618 6.10207 6.16440 6.29387 6.41440 7.08367 7.15615 7.41784 7.53404 7.55952 8.00529 8.12042 8.57063 8.92523 9.39745 9.79985 10.79554 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.002012 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.523978 B =13913.112546 C =14269.092939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.091 0.909 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.516 3.484 7 O -0.518 6.518 8 C -0.171 4.171 9 C 0.145 3.855 10 C -0.152 4.152 11 C -0.179 4.179 12 O -0.543 6.543 13 C 0.112 3.888 14 C -0.172 4.172 15 C 0.094 3.906 16 H 0.078 0.922 17 N -0.660 5.660 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.881 3.119 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.369 0.631 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.043 0.957 50 H 0.087 0.913 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -17.469 -23.604 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.109 0.891 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.304 3.696 7 O -0.393 6.393 8 C -0.211 4.211 9 C 0.103 3.897 10 C -0.209 4.209 11 C -0.237 4.237 12 O -0.347 6.347 13 C -0.012 4.012 14 C -0.212 4.212 15 C -0.017 4.017 16 H 0.096 0.904 17 N -0.292 5.292 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.215 0.785 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.172 0.828 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.892 -15.821 -24.674 29.325 hybrid contribution 0.899 -2.067 1.468 2.690 sum 1.791 -17.888 -23.207 29.355 Atomic orbital electron populations 1.21778 0.94657 1.01331 1.02222 1.21466 0.96986 1.00066 0.92664 0.89104 1.21707 0.99333 0.80239 0.99445 1.48148 1.56481 1.11698 1.18297 1.20413 0.77376 0.89244 0.82570 1.90677 1.53373 1.64825 1.30459 1.22527 1.02966 0.94664 1.00929 1.20898 0.85875 0.89027 0.93864 1.21987 0.97729 1.05103 0.96089 1.22532 1.02240 0.96188 1.02743 1.86714 1.31855 1.68281 1.47860 1.21673 1.00367 0.94885 0.84235 1.22780 1.02455 0.98128 0.97825 1.21569 0.99314 0.89832 0.90966 0.90409 1.60172 1.06333 1.60079 1.02580 1.21746 0.97758 0.97847 0.91155 1.19726 0.86602 0.86408 0.83792 1.90571 1.26517 1.43407 1.84100 1.42211 1.25775 1.45083 1.09957 1.19430 1.12155 1.25681 0.86115 0.86295 1.25049 0.98256 0.97658 0.95268 1.69620 1.39800 1.41536 1.01127 0.86661 0.83671 0.80472 0.78481 1.19597 1.20204 1.19587 0.93266 0.91471 0.93006 0.91669 0.88746 0.88302 0.88829 0.92126 0.92274 0.89037 0.92288 0.91393 0.91547 0.78520 0.89988 0.91156 0.90651 0.90633 0.82806 0.93878 0.89528 0.79732 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.46 37.16 0.31 -1.27 16 2 C -0.09 -0.94 2.91 -90.50 -0.26 -1.20 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.08 5.83 -3.71 -0.02 1.06 16 5 N -0.61 -5.22 2.41 -172.77 -0.42 -5.64 16 6 C 0.52 5.01 7.26 -10.98 -0.08 4.93 16 7 O -0.52 -6.95 12.37 -12.69 -0.16 -7.10 16 8 C -0.17 -1.10 3.30 -27.88 -0.09 -1.19 16 9 C 0.14 1.09 0.98 -90.62 -0.09 1.00 16 10 C -0.15 -1.31 8.52 37.16 0.32 -0.99 16 11 C -0.18 -0.94 8.81 37.16 0.33 -0.61 16 12 O -0.54 -5.24 11.88 -53.48 -0.64 -5.87 16 13 C 0.11 0.73 6.34 -3.71 -0.02 0.71 16 14 C -0.17 -1.41 4.99 -26.61 -0.13 -1.54 16 15 C 0.09 0.96 2.13 -67.67 -0.14 0.82 16 16 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 17 N -0.66 -9.38 5.43 -107.95 -0.59 -9.96 16 18 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 19 C 0.45 9.89 7.82 -10.99 -0.09 9.80 16 20 O -0.56 -14.88 15.78 5.55 0.09 -14.79 16 21 N -0.59 -13.75 5.09 -10.96 -0.06 -13.80 16 22 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 26 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 29 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 30 H 0.05 0.53 5.97 -51.93 -0.31 0.22 16 31 H 0.07 0.84 7.25 -51.93 -0.38 0.47 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 35 H 0.10 0.46 7.95 -51.93 -0.41 0.05 16 36 H 0.09 0.46 7.69 -51.93 -0.40 0.06 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.04 5.51 -51.93 -0.29 0.76 16 40 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.37 2.27 9.05 45.56 0.41 2.68 16 44 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.60 7.42 -51.93 -0.39 0.22 16 47 H 0.08 0.68 6.33 -51.93 -0.33 0.35 16 48 H 0.35 5.32 7.46 -39.29 -0.29 5.03 16 49 H 0.04 0.57 7.41 -51.93 -0.38 0.18 16 50 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 51 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 52 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -35.01 399.92 -7.78 -42.79 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.86 Total: 14.27 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.25 Total: 4.53 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.28 Total: -54.15 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.70 Total: -27.77 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.01 -7.78 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.540 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds