Wall clock time and date at job start Wed Apr 1 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.52198 * 2 1 4 4 C 1.53185 * 109.49781 * 239.91690 * 2 1 3 5 5 N 1.46926 * 108.77524 * 294.68361 * 4 2 1 6 6 C 1.34787 * 120.62918 * 126.11612 * 5 4 2 7 7 O 1.21276 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99759 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46665 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47235 * 60.00311 * 9 8 6 11 11 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 12 12 O 1.42893 * 109.47208 * 299.99863 * 9 8 6 13 13 C 1.46924 * 118.73991 * 306.39104 * 5 4 2 14 14 C 1.53194 * 108.77334 * 53.61035 * 13 5 4 15 15 C 1.53038 * 109.31101 * 305.36035 * 14 13 5 16 16 H 1.08993 * 109.45369 * 301.35673 * 15 14 13 17 17 N 1.46893 * 109.45862 * 181.38636 * 15 14 13 18 18 C 1.46898 * 111.00102 * 84.93663 * 17 15 14 19 19 C 1.50702 * 109.47395 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99982 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00050 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00318 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99659 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00337 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00196 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99718 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47380 * 90.00441 * 26 24 22 28 28 H 1.48502 * 109.47039 * 210.00004 * 26 24 22 29 29 H 1.48499 * 109.47502 * 329.99766 * 26 24 22 30 30 H 1.08991 * 109.47124 * 180.08553 * 1 2 3 31 31 H 1.09003 * 109.46930 * 300.08254 * 1 2 3 32 32 H 1.09003 * 109.46892 * 60.08020 * 1 2 3 33 33 H 1.09001 * 109.59106 * 174.89976 * 4 2 1 34 34 H 1.08998 * 109.70436 * 54.54049 * 4 2 1 35 35 H 1.08998 * 109.47136 * 299.99814 * 8 6 5 36 36 H 1.09001 * 109.47288 * 59.99840 * 8 6 5 37 37 H 1.08998 * 109.47425 * 59.99612 * 10 9 8 38 38 H 1.09000 * 109.47131 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.46591 * 299.99517 * 10 9 8 40 40 H 1.09009 * 109.46812 * 60.00264 * 11 9 8 41 41 H 1.09003 * 109.47171 * 179.97438 * 11 9 8 42 42 H 1.08998 * 109.47299 * 300.00059 * 11 9 8 43 43 H 0.96698 * 114.00179 * 299.99999 * 12 9 8 44 44 H 1.09004 * 109.58777 * 173.39544 * 13 5 4 45 45 H 1.08994 * 109.58607 * 293.81880 * 13 5 4 46 46 H 1.09005 * 109.49558 * 185.41228 * 14 13 5 47 47 H 1.08996 * 109.52408 * 65.33314 * 14 13 5 48 48 H 1.00904 * 111.00400 * 320.97933 * 17 15 14 49 49 H 1.09005 * 109.47082 * 299.99682 * 18 17 15 50 50 H 1.09005 * 109.47171 * 59.99696 * 18 17 15 51 51 H 0.97004 * 120.00056 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1694 6 6 0.9695 -2.7205 -2.1756 7 8 0.6723 -2.0764 -3.1592 8 6 0.5764 -4.1721 -2.0783 9 6 -0.1827 -4.5806 -3.3423 10 6 0.7145 -4.3761 -4.5647 11 6 -0.5813 -6.0546 -3.2438 12 8 -1.3569 -3.7769 -3.4734 13 6 2.0140 -2.9040 0.0309 14 6 1.5030 -2.1557 1.2661 15 6 2.0408 -0.7231 1.2484 16 1 3.1305 -0.7446 1.2352 17 7 1.5799 -0.0124 2.4485 18 6 2.4723 -0.2680 3.5870 19 6 1.9689 0.4762 4.7969 20 8 0.9656 1.1534 4.7184 21 7 2.6334 0.3894 5.9662 22 6 2.1752 1.0660 7.0671 23 1 1.2819 1.6689 6.9971 24 6 2.8606 0.9769 8.2725 25 7 2.4217 1.6259 9.3275 26 14 4.4061 -0.0654 8.3932 27 1 5.5915 0.7671 8.0661 28 1 4.5392 -0.5951 9.7741 29 1 4.3162 -1.1968 7.4356 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 3.1275 -0.6464 -1.2980 34 1 1.6028 -0.2738 -2.1402 35 1 1.4721 -4.7852 -1.9779 36 1 -0.0631 -4.3178 -1.2077 37 1 1.6102 -4.9892 -4.4646 38 1 0.1735 -4.6667 -5.4652 39 1 0.9988 -3.3262 -4.6350 40 1 -1.2204 -6.2007 -2.3729 41 1 -1.1226 -6.3455 -4.1441 42 1 0.3146 -6.6673 -3.1440 43 1 -1.9729 -3.8567 -2.7323 44 1 1.5554 -3.8919 -0.0136 45 1 3.0979 -3.0043 0.0869 46 1 1.8480 -2.6627 2.1672 47 1 0.4132 -2.1354 1.2547 48 1 0.6278 -0.2606 2.6725 49 1 2.4926 -1.3369 3.8000 50 1 3.4785 0.0732 3.3437 51 1 3.4355 -0.1524 6.0292 52 1 2.9004 1.5640 10.1689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667169517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:46 Heat of formation + Delta-G solvation = -146.415946 kcal Electronic energy + Delta-G solvation = -30902.240524 eV Core-core repulsion = 26707.503283 eV Total energy + Delta-G solvation = -4194.737241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59152 -40.37844 -39.61709 -38.17388 -36.29501 -35.76527 -34.07695 -33.72630 -33.38668 -31.87998 -29.73041 -28.56829 -28.15976 -27.38969 -26.05323 -24.31037 -23.80362 -21.79083 -21.30290 -20.73139 -20.36573 -19.46171 -18.33702 -17.75455 -17.50669 -17.02644 -16.75387 -16.38942 -16.23048 -16.06344 -15.92605 -15.45519 -15.28212 -15.13168 -14.98931 -14.90808 -14.48315 -14.40547 -13.98893 -13.81961 -13.70681 -13.36281 -13.25372 -13.08660 -12.98396 -12.94323 -12.73617 -12.70326 -12.60955 -12.44222 -12.39817 -12.38999 -11.99610 -11.95378 -11.62699 -11.60292 -11.49913 -11.33252 -10.97633 -10.43809 -10.40544 -10.23580 -9.55378 -9.20587 -8.40057 -6.01203 1.30895 1.37631 1.46238 1.75171 1.98247 2.07746 2.24613 2.75065 3.16421 3.36405 3.41964 3.59135 3.71177 3.82204 3.91246 4.03828 4.08120 4.10731 4.20044 4.23038 4.27481 4.43847 4.48299 4.55698 4.57726 4.59681 4.62681 4.74541 4.76959 4.78121 4.83877 4.86686 4.92057 4.93248 5.05119 5.10819 5.15490 5.19535 5.26106 5.30610 5.41498 5.47949 5.54411 5.67620 5.93474 6.13093 6.41762 6.52164 6.61459 6.89910 6.96211 7.33776 7.41703 7.99189 8.77687 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.002012 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.523978 B =13913.112546 C =14269.092939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.077 0.923 4 C 0.121 3.879 5 N -0.610 5.610 6 C 0.509 3.491 7 O -0.564 6.564 8 C -0.163 4.163 9 C 0.138 3.862 10 C -0.153 4.153 11 C -0.172 4.172 12 O -0.573 6.573 13 C 0.112 3.888 14 C -0.166 4.166 15 C 0.097 3.903 16 H 0.095 0.905 17 N -0.682 5.682 18 C 0.064 3.936 19 C 0.447 3.553 20 O -0.617 6.617 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.052 0.948 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.968 3.032 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.227 1.227 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.380 0.620 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.343 0.657 49 H 0.081 0.919 50 H 0.114 0.886 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -21.718 -24.086 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.002 4.002 5 N -0.343 5.343 6 C 0.298 3.702 7 O -0.443 6.443 8 C -0.203 4.203 9 C 0.097 3.903 10 C -0.210 4.210 11 C -0.229 4.229 12 O -0.380 6.380 13 C -0.010 4.010 14 C -0.206 4.206 15 C -0.012 4.012 16 H 0.113 0.887 17 N -0.313 5.313 18 C -0.068 4.068 19 C 0.235 3.765 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.071 0.929 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.183 1.183 28 H -0.202 1.202 29 H -0.150 1.150 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.228 0.772 44 H 0.127 0.873 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.162 0.838 49 H 0.099 0.901 50 H 0.132 0.868 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.056 -20.101 -25.168 32.464 hybrid contribution -0.222 -0.609 1.556 1.686 sum 3.834 -20.710 -23.612 31.641 Atomic orbital electron populations 1.21684 0.95739 1.01143 1.00649 1.21393 0.95942 0.99769 0.93614 0.90430 1.21544 0.99982 0.80961 0.97736 1.48236 1.55943 1.11279 1.18890 1.21066 0.76643 0.90496 0.81973 1.90676 1.55112 1.66150 1.32343 1.22546 1.04317 0.92377 1.01044 1.21045 0.85202 0.90200 0.93816 1.21985 0.98907 1.03391 0.96729 1.22449 1.03136 0.94399 1.02936 1.86682 1.32993 1.69250 1.49039 1.21884 1.01781 0.95318 0.82042 1.22704 1.01813 0.96678 0.99398 1.21619 1.00194 0.90783 0.88650 0.88718 1.60131 1.05837 1.61925 1.03384 1.21665 0.98422 0.98722 0.88011 1.21113 0.85249 0.85097 0.85051 1.90553 1.28932 1.45489 1.85171 1.42027 1.26738 1.45357 1.09149 1.18991 1.11158 1.26853 0.88780 0.92940 1.26172 1.02709 0.98946 0.93851 1.69813 1.42178 1.43553 1.02130 0.85329 0.77226 0.79286 0.79431 1.18299 1.20186 1.14984 0.92736 0.93414 0.94095 0.90033 0.91017 0.85497 0.86621 0.89969 0.93162 0.92164 0.90887 0.92377 0.89859 0.77179 0.87289 0.89165 0.89286 0.91699 0.83802 0.90080 0.86817 0.77398 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.46 71.98 0.61 -2.44 16 2 C -0.09 -1.70 2.91 -10.71 -0.03 -1.73 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.12 2.10 5.83 86.36 0.50 2.61 16 5 N -0.61 -8.79 2.41 -818.91 -1.97 -10.76 16 6 C 0.51 8.98 7.26 87.66 0.64 9.61 16 7 O -0.56 -15.31 12.37 14.44 0.18 -15.13 16 8 C -0.16 -1.55 3.30 29.85 0.10 -1.45 16 9 C 0.14 1.82 0.98 -10.79 -0.01 1.81 16 10 C -0.15 -2.52 8.52 71.98 0.61 -1.91 16 11 C -0.17 -1.30 8.81 71.98 0.63 -0.67 16 12 O -0.57 -10.82 11.88 -131.53 -1.56 -12.38 16 13 C 0.11 0.92 6.34 86.36 0.55 1.46 16 14 C -0.17 -2.05 4.99 30.67 0.15 -1.90 16 15 C 0.10 1.70 2.13 44.94 0.10 1.80 16 16 H 0.09 1.40 7.80 -2.39 -0.02 1.38 16 17 N -0.68 -18.10 5.43 -495.44 -2.69 -20.79 16 18 C 0.06 1.74 5.96 85.56 0.51 2.26 16 19 C 0.45 19.40 7.82 87.66 0.69 20.09 16 20 O -0.62 -33.75 15.78 -3.07 -0.05 -33.80 16 21 N -0.59 -26.95 5.09 -306.98 -1.56 -28.51 16 22 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 23 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 25 N -0.94 -56.12 13.96 21.66 0.30 -55.81 16 26 Si 0.97 37.65 27.74 68.60 1.90 39.56 16 27 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 28 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 29 H -0.23 -7.18 6.52 99.48 0.65 -6.53 16 30 H 0.05 1.15 5.97 -2.39 -0.01 1.14 16 31 H 0.05 1.25 7.25 -2.39 -0.02 1.23 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.60 7.00 -2.39 -0.02 1.59 16 35 H 0.13 0.52 7.95 -2.39 -0.02 0.50 16 36 H 0.12 0.62 7.69 -2.39 -0.02 0.60 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 40 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.38 4.40 9.05 -74.06 -0.67 3.73 16 44 H 0.11 0.36 5.93 -2.38 -0.01 0.35 16 45 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.09 0.93 7.42 -2.38 -0.02 0.91 16 47 H 0.06 0.97 6.33 -2.39 -0.02 0.96 16 48 H 0.34 10.15 7.46 -89.69 -0.67 9.48 16 49 H 0.08 1.67 7.41 -2.38 -0.02 1.65 16 50 H 0.11 2.58 8.06 -2.38 -0.02 2.56 16 51 H 0.39 14.43 5.76 -92.71 -0.53 13.89 16 52 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.49 399.92 -0.07 -85.56 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -0.98 Total: 41.24 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.37 Total: 10.84 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -5.93 Total: -115.88 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -1.43 Total: -61.31 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.56 kcal Total: -85.49 -0.07 -85.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.857 kcal (2) G-P(sol) polarization free energy of solvation -85.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds