Wall clock time and date at job start Wed Apr 1 2020 01:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49275 * 2 1 4 4 C 1.53188 * 109.49526 * 120.05914 * 2 1 3 5 5 N 1.47001 * 108.73718 * 65.35173 * 4 2 1 6 6 C 1.34773 * 120.61125 * 233.56178 * 5 4 2 7 7 O 1.21279 * 120.00552 * 0.02730 * 6 5 4 8 8 C 1.50710 * 119.99791 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.46984 * 186.03960 * 8 6 5 10 10 C 1.53000 * 109.47338 * 62.79860 * 9 8 6 11 11 C 1.52998 * 109.46865 * 182.80020 * 9 8 6 12 12 O 1.42903 * 109.47206 * 302.79881 * 9 8 6 13 13 C 1.46919 * 118.75423 * 53.58982 * 5 4 2 14 14 C 1.53198 * 108.77614 * 306.38832 * 13 5 4 15 15 C 1.53032 * 109.50036 * 239.93248 * 2 1 3 16 16 H 1.08999 * 109.46044 * 181.39004 * 15 2 1 17 17 N 1.46907 * 109.45928 * 61.43324 * 15 2 1 18 18 C 1.46896 * 110.99935 * 155.00001 * 17 15 2 19 19 C 1.50703 * 109.47158 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99869 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00407 * 179.97438 * 19 18 17 22 22 C 1.37088 * 120.00388 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99993 * 0.02562 * 22 21 19 24 24 C 1.38954 * 120.00174 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99833 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 119.99824 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46853 * 90.00701 * 26 24 22 28 28 H 1.48499 * 109.46973 * 210.00015 * 26 24 22 29 29 H 1.48497 * 109.47552 * 330.00093 * 26 24 22 30 30 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47047 * 60.00349 * 1 2 3 32 32 H 1.09005 * 109.47346 * 299.99882 * 1 2 3 33 33 H 1.09000 * 109.58729 * 185.10542 * 4 2 1 34 34 H 1.09003 * 109.59151 * 305.53095 * 4 2 1 35 35 H 1.08996 * 109.46876 * 306.03876 * 8 6 5 36 36 H 1.09003 * 109.46615 * 66.04123 * 8 6 5 37 37 H 1.09000 * 109.46903 * 59.99787 * 10 9 8 38 38 H 1.09002 * 109.47329 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.47501 * 300.00080 * 10 9 8 40 40 H 1.09003 * 109.47162 * 60.46275 * 11 9 8 41 41 H 1.09006 * 109.47067 * 180.45796 * 11 9 8 42 42 H 1.09000 * 109.47410 * 300.45675 * 11 9 8 43 43 H 0.96703 * 113.99848 * 179.97438 * 12 9 8 44 44 H 1.09003 * 109.58667 * 186.60954 * 13 5 4 45 45 H 1.08997 * 109.70970 * 66.25166 * 13 5 4 46 46 H 1.08997 * 109.49587 * 294.68755 * 14 13 5 47 47 H 1.09002 * 109.52437 * 174.60579 * 14 13 5 48 48 H 1.00904 * 110.99876 * 31.04472 * 17 15 2 49 49 H 1.08998 * 109.47390 * 299.99883 * 18 17 15 50 50 H 1.08999 * 109.47644 * 60.00213 * 18 17 15 51 51 H 0.97004 * 119.99696 * 359.97438 * 21 19 18 52 52 H 0.97005 * 119.99702 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0412 -0.7233 1.2498 5 7 1.6515 -2.1384 1.1690 6 6 0.9749 -2.7226 2.1776 7 8 0.6814 -2.0799 3.1634 8 6 0.5827 -4.1745 2.0805 9 6 -0.2974 -4.5461 3.2755 10 6 -1.5882 -3.7258 3.2329 11 6 -0.6379 -6.0364 3.2142 12 8 0.4043 -4.2673 4.4888 13 6 2.0141 -2.9039 -0.0314 14 6 1.5031 -2.1554 -1.2665 15 6 2.0408 -0.7227 -1.2484 16 1 3.1306 -0.7440 -1.2354 17 7 1.5799 -0.0118 -2.4485 18 6 2.4723 -0.2672 -3.5870 19 6 1.9690 0.4773 -4.7968 20 8 0.9657 1.1544 -4.7181 21 7 2.6341 0.3916 -5.9658 22 6 2.1759 1.0684 -7.0664 23 1 1.2821 1.6706 -6.9966 24 6 2.8614 0.9796 -8.2718 25 7 2.4218 1.6280 -9.3270 26 14 4.4076 -0.0615 -8.3924 27 1 4.0424 -1.4467 -8.7835 28 1 5.3160 0.5180 -9.4142 29 1 5.0937 -0.0833 -7.0756 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 3.1274 -0.6458 1.2983 34 1 1.6006 -0.2723 2.1390 35 1 0.0293 -4.3403 1.1562 36 1 1.4796 -4.7940 2.0832 37 1 -2.1234 -3.9384 2.3075 38 1 -2.2154 -3.9909 4.0841 39 1 -1.3456 -2.6640 3.2766 40 1 0.2813 -6.6211 3.2528 41 1 -1.2716 -6.2995 4.0612 42 1 -1.1659 -6.2506 2.2850 43 1 -0.0951 -4.4788 5.2894 44 1 1.5555 -3.8918 0.0128 45 1 3.0978 -3.0064 -0.0886 46 1 0.4134 -2.1352 -1.2546 47 1 1.8478 -2.6621 -2.1680 48 1 1.4934 0.9778 -2.2717 49 1 3.4785 0.0740 -3.3436 50 1 2.4927 -1.3359 -3.8002 51 1 3.4371 -0.1490 -6.0284 52 1 2.9006 1.5663 -10.1684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667169518.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:50 Heat of formation + Delta-G solvation = -147.019695 kcal Electronic energy + Delta-G solvation = -30894.981480 eV Core-core repulsion = 26700.218058 eV Total energy + Delta-G solvation = -4194.763422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53627 -40.35291 -39.56626 -38.19089 -36.28936 -35.75905 -34.08769 -33.72285 -33.32788 -31.94005 -29.68478 -28.61762 -28.15832 -27.38326 -26.06832 -24.55184 -23.52674 -21.92416 -21.27494 -20.62236 -20.28071 -19.37091 -18.29861 -17.69013 -17.42371 -17.06619 -16.74087 -16.54623 -16.44284 -16.07899 -15.89597 -15.45708 -15.32668 -15.13263 -14.90189 -14.60757 -14.44119 -14.23918 -14.09224 -13.98168 -13.76562 -13.55017 -13.35509 -13.11589 -12.91538 -12.87218 -12.71708 -12.66262 -12.54333 -12.45795 -12.40001 -12.26287 -12.09729 -11.96566 -11.68550 -11.50767 -11.43964 -11.28459 -10.93108 -10.45002 -10.40569 -10.23564 -9.54506 -9.27057 -8.40192 -6.01167 1.31089 1.37124 1.45931 1.77758 1.98067 2.08768 2.24352 2.74077 3.16195 3.31597 3.40191 3.57090 3.76102 3.79351 3.85440 4.04057 4.09924 4.17455 4.19422 4.24261 4.31052 4.46439 4.50601 4.54426 4.58170 4.61418 4.65248 4.72276 4.74754 4.77017 4.83439 4.86507 4.90517 4.96087 4.98039 5.10931 5.15375 5.21052 5.25587 5.32342 5.45186 5.49597 5.54972 5.65127 5.93242 6.12187 6.40758 6.51222 6.61301 6.89771 6.97890 7.34281 7.41578 7.98881 8.77521 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.002015 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.018745 B =13891.786592 C =14234.161454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.123 3.877 5 N -0.612 5.612 6 C 0.510 3.490 7 O -0.563 6.563 8 C -0.130 4.130 9 C 0.138 3.862 10 C -0.182 4.182 11 C -0.172 4.172 12 O -0.569 6.569 13 C 0.109 3.891 14 C -0.125 4.125 15 C 0.096 3.904 16 H 0.062 0.938 17 N -0.679 5.679 18 C 0.064 3.936 19 C 0.448 3.552 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.256 1.256 28 H -0.277 1.277 29 H -0.230 1.230 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.383 0.617 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.343 0.657 49 H 0.075 0.925 50 H 0.117 0.883 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -19.495 25.891 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.000 4.000 5 N -0.346 5.346 6 C 0.300 3.700 7 O -0.441 6.441 8 C -0.169 4.169 9 C 0.097 3.903 10 C -0.240 4.240 11 C -0.229 4.229 12 O -0.376 6.376 13 C -0.014 4.014 14 C -0.163 4.163 15 C -0.014 4.014 16 H 0.080 0.920 17 N -0.311 5.311 18 C -0.068 4.068 19 C 0.236 3.764 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.202 1.202 29 H -0.153 1.153 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.162 0.838 49 H 0.093 0.907 50 H 0.134 0.866 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.964 -18.938 25.652 31.946 hybrid contribution 0.642 0.704 -0.252 0.986 sum 2.607 -18.234 25.401 31.376 Atomic orbital electron populations 1.21636 0.95025 1.01497 1.00556 1.21598 0.96693 0.99551 0.94143 0.89953 1.21516 0.99838 0.81023 0.97623 1.48235 1.56364 1.11235 1.18760 1.21015 0.76811 0.90317 0.81853 1.90668 1.55200 1.66174 1.32063 1.21915 1.02736 0.92352 0.99912 1.20959 0.90487 0.94187 0.84645 1.22571 0.97428 1.01203 1.02756 1.22447 1.02694 0.94005 1.03791 1.86623 1.46129 1.89052 1.15809 1.21963 1.01674 0.95499 0.82255 1.21983 1.01713 0.94389 0.98265 1.21574 0.97714 0.94445 0.87618 0.92030 1.60131 1.50866 1.15899 1.04229 1.21680 0.95144 1.01443 0.88581 1.21067 0.85149 0.84916 0.85254 1.90551 1.28571 1.45607 1.85273 1.42031 1.26498 1.45539 1.09251 1.18992 1.11037 1.26993 0.88707 0.92869 1.26162 1.02726 0.98898 0.93863 1.69817 1.42233 1.43519 1.02077 0.85335 0.77088 0.78622 0.80275 1.18037 1.20234 1.15274 0.92883 0.93149 0.93943 0.90241 0.90740 0.85688 0.86787 0.91272 0.91735 0.93165 0.91425 0.91347 0.90290 0.76902 0.87275 0.89455 0.91791 0.89597 0.83819 0.90697 0.86562 0.77436 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.56 71.98 0.62 -2.35 16 2 C -0.10 -1.91 2.58 -10.72 -0.03 -1.93 16 3 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 4 C 0.12 2.23 5.83 86.35 0.50 2.73 16 5 N -0.61 -10.13 2.41 -818.72 -1.97 -12.10 16 6 C 0.51 10.21 7.18 87.66 0.63 10.83 16 7 O -0.56 -15.92 12.61 16.73 0.21 -15.71 16 8 C -0.13 -1.64 3.40 29.85 0.10 -1.54 16 9 C 0.14 1.88 0.98 -10.80 -0.01 1.87 16 10 C -0.18 -2.81 8.53 71.98 0.61 -2.20 16 11 C -0.17 -1.36 8.81 71.98 0.63 -0.73 16 12 O -0.57 -10.26 11.54 -129.22 -1.49 -11.75 16 13 C 0.11 1.17 6.34 86.37 0.55 1.72 16 14 C -0.12 -1.92 5.25 30.67 0.16 -1.76 16 15 C 0.10 1.78 2.15 44.94 0.10 1.87 16 16 H 0.06 0.97 7.80 -2.39 -0.02 0.95 16 17 N -0.68 -18.34 5.25 -495.45 -2.60 -20.94 16 18 C 0.06 1.79 5.96 85.56 0.51 2.30 16 19 C 0.45 19.62 7.82 87.66 0.69 20.30 16 20 O -0.62 -33.73 15.78 -3.06 -0.05 -33.78 16 21 N -0.59 -27.21 5.09 -306.99 -1.56 -28.77 16 22 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 23 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 24 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 25 N -0.94 -56.24 13.96 21.66 0.30 -55.94 16 26 Si 0.97 37.98 27.74 68.60 1.90 39.89 16 27 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 28 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 29 H -0.23 -7.45 6.52 99.48 0.65 -6.81 16 30 H 0.05 1.22 5.97 -2.38 -0.01 1.21 16 31 H 0.05 1.35 7.59 -2.39 -0.02 1.33 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.67 7.01 -2.39 -0.02 1.66 16 35 H 0.13 0.99 7.37 -2.39 -0.02 0.97 16 36 H 0.11 1.09 8.13 -2.39 -0.02 1.07 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 1.13 5.98 -2.39 -0.01 1.12 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.38 4.29 9.05 -74.06 -0.67 3.62 16 44 H 0.11 0.68 5.88 -2.39 -0.01 0.67 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.23 6.33 -2.39 -0.02 1.21 16 47 H 0.09 1.19 7.42 -2.39 -0.02 1.18 16 48 H 0.34 10.36 7.95 -89.69 -0.71 9.65 16 49 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 50 H 0.12 2.64 7.41 -2.39 -0.02 2.62 16 51 H 0.39 14.63 5.76 -92.71 -0.53 14.10 16 52 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -83.95 400.81 0.10 -83.85 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.02 Total: 42.87 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.38 Total: 12.38 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -5.84 Total: -117.75 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.33 Total: -61.24 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.89 kcal Total: -83.95 0.10 -83.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169518.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.165 kcal (2) G-P(sol) polarization free energy of solvation -83.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds