Wall clock time and date at job start Wed Apr 1 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.49674 * 2 1 4 4 C 1.53194 * 109.49788 * 120.09853 * 2 1 3 5 5 N 1.46918 * 108.77609 * 174.58580 * 4 2 1 6 6 C 1.34781 * 120.63019 * 126.36570 * 5 4 2 7 7 O 1.21274 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99947 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46943 * 186.08969 * 8 6 5 10 10 C 1.52992 * 109.47398 * 62.74802 * 9 8 6 11 11 C 1.53001 * 109.46832 * 182.74782 * 9 8 6 12 12 O 1.42900 * 109.47113 * 302.74377 * 9 8 6 13 13 C 1.46928 * 118.74278 * 306.39058 * 5 4 2 14 14 C 1.53194 * 108.76989 * 53.60492 * 13 5 4 15 15 C 1.53039 * 109.31612 * 305.36412 * 14 13 5 16 16 H 1.08991 * 109.45441 * 301.35859 * 15 14 13 17 17 N 1.46903 * 109.45880 * 181.38494 * 15 14 13 18 18 C 1.46905 * 110.99831 * 84.93812 * 17 15 14 19 19 C 1.50690 * 109.47274 * 179.97438 * 18 17 15 20 20 O 1.21295 * 120.00242 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00312 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00591 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99573 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00095 * 180.02562 * 22 21 19 25 25 N 1.31418 * 119.99694 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00139 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46811 * 90.00588 * 26 24 22 28 28 H 1.48498 * 109.47104 * 210.00228 * 26 24 22 29 29 H 1.48495 * 109.47192 * 330.00204 * 26 24 22 30 30 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46930 * 300.06287 * 1 2 3 32 32 H 1.09004 * 109.47063 * 60.06692 * 1 2 3 33 33 H 1.09009 * 109.58297 * 294.37371 * 4 2 1 34 34 H 1.08996 * 109.59087 * 54.79431 * 4 2 1 35 35 H 1.09000 * 109.47265 * 306.09239 * 8 6 5 36 36 H 1.09007 * 109.46876 * 66.09361 * 8 6 5 37 37 H 1.09008 * 109.47017 * 59.99478 * 10 9 8 38 38 H 1.08997 * 109.47297 * 179.97438 * 10 9 8 39 39 H 1.09004 * 109.47003 * 299.99931 * 10 9 8 40 40 H 1.09000 * 109.47316 * 60.23717 * 11 9 8 41 41 H 1.08998 * 109.47156 * 180.23512 * 11 9 8 42 42 H 1.09001 * 109.47134 * 300.23401 * 11 9 8 43 43 H 0.96701 * 114.00170 * 180.02562 * 12 9 8 44 44 H 1.08991 * 109.58778 * 173.39548 * 13 5 4 45 45 H 1.08995 * 109.58011 * 293.82587 * 13 5 4 46 46 H 1.09003 * 109.49311 * 185.41635 * 14 13 5 47 47 H 1.09001 * 109.49946 * 65.32610 * 14 13 5 48 48 H 1.00896 * 111.00397 * 320.98348 * 17 15 14 49 49 H 1.09007 * 109.46949 * 300.00099 * 18 17 15 50 50 H 1.09004 * 109.46893 * 59.99708 * 18 17 15 51 51 H 0.97006 * 119.99684 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99845 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8295 1.1693 6 6 4.2811 -0.3862 2.1778 7 8 3.7732 0.1048 3.1635 8 6 5.7806 -0.5018 2.0810 9 6 6.4119 -0.0707 3.4064 10 6 5.9560 -1.0158 4.5197 11 6 7.9363 -0.1226 3.2858 12 8 6.0038 1.2631 3.7168 13 6 4.1053 -1.4267 -0.0312 14 6 3.5708 -0.6947 -1.2661 15 6 2.0408 -0.7228 -1.2485 16 1 1.6969 -1.7570 -1.2356 17 7 1.5251 -0.0505 -2.4486 18 6 1.4678 -0.9767 -3.5874 19 6 0.9347 -0.2533 -4.7970 20 8 0.6318 0.9186 -4.7182 21 7 0.7935 -0.9086 -5.9662 22 6 0.3089 -0.2503 -7.0669 23 1 0.0400 0.7933 -6.9969 24 6 0.1629 -0.9261 -8.2721 25 7 -0.3020 -0.2952 -9.3270 26 14 0.6274 -2.7314 -8.3929 27 1 -0.5541 -3.5694 -8.0653 28 1 1.0814 -3.0343 -9.7740 29 1 1.7238 -3.0256 -7.4357 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8906 33 1 1.7638 -0.1585 2.1389 34 1 1.6053 -1.7220 1.2976 35 1 6.0523 -1.5357 1.8683 36 1 6.1436 0.1416 1.2794 37 1 6.2672 -2.0332 4.2829 38 1 6.4061 -0.7089 5.4638 39 1 4.8699 -0.9788 4.6056 40 1 8.2615 0.5539 2.4954 41 1 8.3861 0.1805 4.2313 42 1 8.2473 -1.1391 3.0448 43 1 6.3676 1.6029 4.5459 44 1 5.1895 -1.3246 0.0134 45 1 3.8375 -2.4818 -0.0874 46 1 3.9334 -1.1891 -2.1674 47 1 3.9159 0.3392 -1.2540 48 1 2.0772 0.7638 -2.6723 49 1 2.4684 -1.3531 -3.8003 50 1 0.8099 -1.8111 -3.3442 51 1 1.0354 -1.8459 -6.0291 52 1 -0.4037 -0.7668 -10.1685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667169519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:54 Heat of formation + Delta-G solvation = -123.425531 kcal Electronic energy + Delta-G solvation = -30654.948678 eV Core-core repulsion = 26461.208376 eV Total energy + Delta-G solvation = -4193.740302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70782 -39.09081 -38.29417 -37.40787 -35.15951 -33.97646 -33.42297 -32.80107 -31.68600 -31.01725 -29.11328 -27.69887 -27.21734 -26.21912 -24.58682 -23.23879 -22.37817 -21.27286 -20.36604 -19.43688 -19.14758 -18.28897 -17.50447 -16.85749 -16.23837 -16.03754 -15.83882 -15.35331 -15.06118 -15.01057 -14.68977 -14.59722 -14.29583 -13.98014 -13.82032 -13.72900 -13.29092 -13.21011 -13.01934 -12.64881 -12.60955 -12.44052 -12.37677 -12.34907 -12.14387 -12.04433 -11.98233 -11.78320 -11.71890 -11.49720 -11.22502 -11.15913 -11.06136 -10.81309 -10.61780 -10.50082 -10.34421 -9.98691 -9.73812 -9.58509 -8.84081 -8.59221 -8.19902 -8.09997 -6.32104 -3.83587 2.48851 2.74965 3.00118 3.05206 3.13386 3.72847 3.83258 4.03343 4.09177 4.17994 4.27586 4.42734 4.58450 4.62767 4.73671 4.76706 4.84426 4.96356 4.98882 5.03228 5.11238 5.14846 5.19240 5.23747 5.30008 5.36564 5.42113 5.44597 5.48534 5.56215 5.61986 5.63706 5.65607 5.68250 5.75463 5.86856 5.87330 5.94024 6.00736 6.09795 6.25540 6.31630 6.57479 7.11221 7.18675 7.44622 7.55953 7.57939 8.05485 8.13689 8.58693 8.94124 9.41368 9.81793 10.81044 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002009 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.633671 B =13937.326590 C =14461.518276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.617 5.617 6 C 0.518 3.482 7 O -0.519 6.519 8 C -0.130 4.130 9 C 0.142 3.858 10 C -0.185 4.185 11 C -0.180 4.180 12 O -0.543 6.543 13 C 0.112 3.888 14 C -0.170 4.170 15 C 0.093 3.907 16 H 0.078 0.922 17 N -0.659 5.659 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.372 0.628 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.351 0.649 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.811 -7.618 25.559 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.006 4.006 5 N -0.351 5.351 6 C 0.306 3.694 7 O -0.395 6.395 8 C -0.169 4.169 9 C 0.101 3.899 10 C -0.242 4.242 11 C -0.237 4.237 12 O -0.348 6.348 13 C -0.012 4.012 14 C -0.210 4.210 15 C -0.018 4.018 16 H 0.096 0.904 17 N -0.290 5.290 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.219 0.781 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.171 0.829 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.270 -6.707 25.500 29.981 hybrid contribution 1.747 -1.652 -0.296 2.422 sum 16.017 -8.359 25.204 31.010 Atomic orbital electron populations 1.21646 0.93454 1.01729 1.02591 1.21430 0.97109 0.99834 0.92656 0.90810 1.21723 0.78681 1.00759 0.99408 1.48195 1.07079 1.61547 1.18310 1.20431 0.89006 0.77464 0.82546 1.90683 1.75110 1.42986 1.30686 1.21791 0.92907 1.03396 0.98855 1.20812 0.91998 0.83753 0.93341 1.22619 1.04414 0.99046 0.98144 1.22529 0.95597 1.02804 1.02806 1.86682 1.74972 1.28419 1.44755 1.21682 0.98135 0.97142 0.84226 1.22748 0.98433 1.01921 0.97881 1.21622 0.90842 0.98313 0.90978 0.90377 1.60153 1.57790 1.08523 1.02532 1.21734 0.99685 0.95894 0.91116 1.19727 0.84828 0.88139 0.83788 1.90574 1.53563 1.16323 1.84094 1.42212 1.59337 1.11544 1.09980 1.19429 1.39185 0.98578 0.86133 0.86299 1.25049 0.97512 0.98411 0.95276 1.69627 1.44710 1.36671 1.01120 0.86662 0.79008 0.85153 0.78473 1.19606 1.20217 1.19580 0.93231 0.93409 0.90125 0.88879 0.91665 0.88079 0.88243 0.92352 0.92523 0.89891 0.91664 0.91976 0.91552 0.78133 0.89904 0.91157 0.90500 0.90977 0.82888 0.93885 0.89557 0.79741 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.03 37.16 0.34 -1.22 16 2 C -0.09 -0.99 2.60 -90.50 -0.23 -1.22 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.18 5.72 -3.71 -0.02 1.16 16 5 N -0.62 -5.85 2.97 -172.77 -0.51 -6.36 16 6 C 0.52 5.57 7.18 -10.98 -0.08 5.49 16 7 O -0.52 -7.38 12.61 -15.08 -0.19 -7.57 16 8 C -0.13 -0.98 3.34 -27.88 -0.09 -1.07 16 9 C 0.14 1.07 0.98 -90.62 -0.09 0.98 16 10 C -0.18 -1.37 8.53 37.15 0.32 -1.05 16 11 C -0.18 -0.93 8.81 37.16 0.33 -0.60 16 12 O -0.54 -5.28 11.54 -55.87 -0.64 -5.93 16 13 C 0.11 0.80 6.30 -3.71 -0.02 0.78 16 14 C -0.17 -1.50 5.33 -26.61 -0.14 -1.64 16 15 C 0.09 1.00 1.89 -67.67 -0.13 0.87 16 16 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 17 N -0.66 -9.51 5.05 -107.95 -0.55 -10.05 16 18 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 19 C 0.45 9.95 7.82 -10.99 -0.09 9.86 16 20 O -0.56 -14.94 15.78 5.54 0.09 -14.85 16 21 N -0.59 -13.84 5.09 -10.97 -0.06 -13.89 16 22 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 23 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 25 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 26 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.13 7.57 -51.93 -0.39 0.73 16 33 H 0.09 1.09 7.01 -51.92 -0.36 0.72 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.50 7.63 -51.93 -0.40 0.11 16 36 H 0.10 0.71 7.96 -51.93 -0.41 0.29 16 37 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.85 5.98 -51.93 -0.31 0.54 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.37 2.24 9.05 45.56 0.41 2.66 16 44 H 0.08 0.44 5.95 -51.93 -0.31 0.13 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.64 7.42 -51.93 -0.39 0.26 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.35 5.44 8.18 -39.29 -0.32 5.12 16 49 H 0.04 0.58 7.41 -51.93 -0.38 0.19 16 50 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 51 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 52 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -35.24 405.64 -8.01 -43.25 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -8.13 Total: 14.38 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.19 Total: 5.36 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.34 Total: -55.18 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.75 Total: -28.35 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.24 -8.01 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.175 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds