Wall clock time and date at job start Wed Apr 1 2020 01:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.49674 * 2 1 4 4 C 1.53194 * 109.49788 * 120.09853 * 2 1 3 5 5 N 1.46918 * 108.77609 * 174.58580 * 4 2 1 6 6 C 1.34781 * 120.63019 * 126.36570 * 5 4 2 7 7 O 1.21274 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99947 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46943 * 186.08969 * 8 6 5 10 10 C 1.52992 * 109.47398 * 62.74802 * 9 8 6 11 11 C 1.53001 * 109.46832 * 182.74782 * 9 8 6 12 12 O 1.42900 * 109.47113 * 302.74377 * 9 8 6 13 13 C 1.46928 * 118.74278 * 306.39058 * 5 4 2 14 14 C 1.53194 * 108.76989 * 53.60492 * 13 5 4 15 15 C 1.53039 * 109.31612 * 305.36412 * 14 13 5 16 16 H 1.08991 * 109.45441 * 301.35859 * 15 14 13 17 17 N 1.46903 * 109.45880 * 181.38494 * 15 14 13 18 18 C 1.46905 * 110.99831 * 84.93812 * 17 15 14 19 19 C 1.50690 * 109.47274 * 179.97438 * 18 17 15 20 20 O 1.21295 * 120.00242 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00312 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00591 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99573 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00095 * 180.02562 * 22 21 19 25 25 N 1.31418 * 119.99694 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00139 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46811 * 90.00588 * 26 24 22 28 28 H 1.48498 * 109.47104 * 210.00228 * 26 24 22 29 29 H 1.48495 * 109.47192 * 330.00204 * 26 24 22 30 30 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46930 * 300.06287 * 1 2 3 32 32 H 1.09004 * 109.47063 * 60.06692 * 1 2 3 33 33 H 1.09009 * 109.58297 * 294.37371 * 4 2 1 34 34 H 1.08996 * 109.59087 * 54.79431 * 4 2 1 35 35 H 1.09000 * 109.47265 * 306.09239 * 8 6 5 36 36 H 1.09007 * 109.46876 * 66.09361 * 8 6 5 37 37 H 1.09008 * 109.47017 * 59.99478 * 10 9 8 38 38 H 1.08997 * 109.47297 * 179.97438 * 10 9 8 39 39 H 1.09004 * 109.47003 * 299.99931 * 10 9 8 40 40 H 1.09000 * 109.47316 * 60.23717 * 11 9 8 41 41 H 1.08998 * 109.47156 * 180.23512 * 11 9 8 42 42 H 1.09001 * 109.47134 * 300.23401 * 11 9 8 43 43 H 0.96701 * 114.00170 * 180.02562 * 12 9 8 44 44 H 1.08991 * 109.58778 * 173.39548 * 13 5 4 45 45 H 1.08995 * 109.58011 * 293.82587 * 13 5 4 46 46 H 1.09003 * 109.49311 * 185.41635 * 14 13 5 47 47 H 1.09001 * 109.49946 * 65.32610 * 14 13 5 48 48 H 1.00896 * 111.00397 * 320.98348 * 17 15 14 49 49 H 1.09007 * 109.46949 * 300.00099 * 18 17 15 50 50 H 1.09004 * 109.46893 * 59.99708 * 18 17 15 51 51 H 0.97006 * 119.99684 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99845 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8295 1.1693 6 6 4.2811 -0.3862 2.1778 7 8 3.7732 0.1048 3.1635 8 6 5.7806 -0.5018 2.0810 9 6 6.4119 -0.0707 3.4064 10 6 5.9560 -1.0158 4.5197 11 6 7.9363 -0.1226 3.2858 12 8 6.0038 1.2631 3.7168 13 6 4.1053 -1.4267 -0.0312 14 6 3.5708 -0.6947 -1.2661 15 6 2.0408 -0.7228 -1.2485 16 1 1.6969 -1.7570 -1.2356 17 7 1.5251 -0.0505 -2.4486 18 6 1.4678 -0.9767 -3.5874 19 6 0.9347 -0.2533 -4.7970 20 8 0.6318 0.9186 -4.7182 21 7 0.7935 -0.9086 -5.9662 22 6 0.3089 -0.2503 -7.0669 23 1 0.0400 0.7933 -6.9969 24 6 0.1629 -0.9261 -8.2721 25 7 -0.3020 -0.2952 -9.3270 26 14 0.6274 -2.7314 -8.3929 27 1 -0.5541 -3.5694 -8.0653 28 1 1.0814 -3.0343 -9.7740 29 1 1.7238 -3.0256 -7.4357 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8906 33 1 1.7638 -0.1585 2.1389 34 1 1.6053 -1.7220 1.2976 35 1 6.0523 -1.5357 1.8683 36 1 6.1436 0.1416 1.2794 37 1 6.2672 -2.0332 4.2829 38 1 6.4061 -0.7089 5.4638 39 1 4.8699 -0.9788 4.6056 40 1 8.2615 0.5539 2.4954 41 1 8.3861 0.1805 4.2313 42 1 8.2473 -1.1391 3.0448 43 1 6.3676 1.6029 4.5459 44 1 5.1895 -1.3246 0.0134 45 1 3.8375 -2.4818 -0.0874 46 1 3.9334 -1.1891 -2.1674 47 1 3.9159 0.3392 -1.2540 48 1 2.0772 0.7638 -2.6723 49 1 2.4684 -1.3531 -3.8003 50 1 0.8099 -1.8111 -3.3442 51 1 1.0354 -1.8459 -6.0291 52 1 -0.4037 -0.7668 -10.1685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667169519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:53 Heat of formation + Delta-G solvation = -151.693842 kcal Electronic energy + Delta-G solvation = -30656.174484 eV Core-core repulsion = 26461.208376 eV Total energy + Delta-G solvation = -4194.966108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46373 -40.36066 -39.50903 -38.21891 -36.29245 -35.77733 -34.30920 -33.72759 -33.46832 -31.92952 -29.74624 -28.57206 -28.15816 -27.11313 -26.06490 -24.31487 -23.23027 -21.93428 -21.39958 -21.03867 -20.25779 -19.81683 -18.25233 -17.72261 -17.42706 -16.95372 -16.90935 -16.58038 -16.31303 -16.00396 -15.71292 -15.49853 -15.31695 -15.08848 -14.90338 -14.59364 -14.39950 -14.22924 -14.19207 -13.87155 -13.73359 -13.40581 -13.30105 -13.08041 -12.99850 -12.90290 -12.87093 -12.70160 -12.60539 -12.40405 -12.39642 -12.32295 -11.96918 -11.94661 -11.75004 -11.61096 -11.49580 -11.38893 -10.96085 -10.49416 -10.40692 -10.23344 -9.60855 -9.18696 -8.39919 -6.01042 1.30982 1.37661 1.46279 1.73226 1.98497 2.06141 2.24723 2.74531 3.16529 3.32150 3.40943 3.56782 3.70680 3.80348 3.92619 4.03433 4.07769 4.10713 4.20518 4.24988 4.33519 4.44121 4.48346 4.54360 4.57645 4.59047 4.64540 4.73687 4.74010 4.77072 4.81027 4.83292 4.91309 4.94982 4.98999 5.14656 5.17844 5.20495 5.24940 5.35826 5.44454 5.49073 5.54707 5.65360 5.93646 6.13005 6.39719 6.48296 6.61618 6.90085 6.97151 7.30658 7.41855 7.99455 8.77858 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002009 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.633671 B =13937.326590 C =14461.518276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.048 0.952 4 C 0.123 3.877 5 N -0.617 5.617 6 C 0.508 3.492 7 O -0.564 6.564 8 C -0.129 4.129 9 C 0.135 3.865 10 C -0.180 4.180 11 C -0.172 4.172 12 O -0.573 6.573 13 C 0.111 3.889 14 C -0.164 4.164 15 C 0.097 3.903 16 H 0.097 0.903 17 N -0.679 5.679 18 C 0.065 3.935 19 C 0.447 3.553 20 O -0.617 6.617 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.052 0.948 24 C -0.019 4.019 25 N -0.936 5.936 26 Si 0.968 3.032 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.227 1.227 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.383 0.617 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.341 0.659 49 H 0.081 0.919 50 H 0.114 0.886 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.636 -12.206 26.588 34.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 H 0.067 0.933 4 C -0.001 4.001 5 N -0.350 5.350 6 C 0.298 3.702 7 O -0.442 6.442 8 C -0.168 4.168 9 C 0.094 3.906 10 C -0.237 4.237 11 C -0.229 4.229 12 O -0.380 6.380 13 C -0.011 4.011 14 C -0.204 4.204 15 C -0.013 4.013 16 H 0.115 0.885 17 N -0.309 5.309 18 C -0.067 4.067 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.070 0.930 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.150 1.150 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.231 0.769 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.160 0.840 49 H 0.099 0.901 50 H 0.132 0.868 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.120 -11.317 26.551 33.557 hybrid contribution 0.790 -0.045 -0.561 0.970 sum 17.910 -11.362 25.990 33.546 Atomic orbital electron populations 1.21572 0.94014 1.02148 1.01224 1.21330 0.96580 0.98776 0.93686 0.93330 1.21569 0.79680 1.01107 0.97697 1.48310 1.06640 1.61153 1.18925 1.21095 0.90466 0.76598 0.82063 1.90669 1.76108 1.44914 1.32503 1.21921 0.90224 1.05509 0.99156 1.21022 0.93528 0.82724 0.93311 1.22550 1.02237 1.00156 0.98782 1.22448 0.93501 1.03827 1.03155 1.86646 1.75832 1.29852 1.45693 1.21909 0.99450 0.97760 0.81998 1.22677 0.96577 1.01628 0.99533 1.21666 0.92390 0.98489 0.88724 0.88515 1.60115 1.58879 1.08614 1.03319 1.21653 1.01687 0.95419 0.87962 1.21096 0.82573 0.87742 0.85035 1.90556 1.55200 1.19206 1.85160 1.42025 1.59756 1.12345 1.09162 1.18989 1.41372 0.96590 0.88800 0.92962 1.26175 0.96517 1.05148 0.93849 1.69820 1.46002 1.39748 1.02123 0.85330 0.80258 0.76261 0.79426 1.18249 1.20178 1.15014 0.91837 0.93219 0.93038 0.91127 0.89809 0.84798 0.87636 0.90598 0.91780 0.93116 0.91960 0.91317 0.89816 0.76901 0.87426 0.88788 0.88937 0.92512 0.84021 0.90121 0.86775 0.77401 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.03 71.98 0.65 -2.34 16 2 C -0.08 -1.77 2.60 -10.71 -0.03 -1.80 16 3 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 4 C 0.12 2.33 5.72 86.36 0.49 2.83 16 5 N -0.62 -10.37 2.97 -818.92 -2.43 -12.80 16 6 C 0.51 10.32 7.18 87.66 0.63 10.95 16 7 O -0.56 -16.30 12.61 16.73 0.21 -16.09 16 8 C -0.13 -1.60 3.34 29.85 0.10 -1.50 16 9 C 0.13 1.80 0.98 -10.80 -0.01 1.78 16 10 C -0.18 -2.41 8.53 71.98 0.61 -1.79 16 11 C -0.17 -1.31 8.81 71.98 0.63 -0.67 16 12 O -0.57 -11.04 11.54 -129.24 -1.49 -12.53 16 13 C 0.11 1.12 6.30 86.36 0.54 1.67 16 14 C -0.16 -2.34 5.33 30.67 0.16 -2.17 16 15 C 0.10 1.83 1.89 44.94 0.08 1.91 16 16 H 0.10 1.53 7.80 -2.39 -0.02 1.51 16 17 N -0.68 -18.61 5.05 -495.43 -2.50 -21.11 16 18 C 0.06 1.81 5.96 85.55 0.51 2.32 16 19 C 0.45 19.63 7.82 87.65 0.69 20.32 16 20 O -0.62 -34.05 15.78 -3.08 -0.05 -34.10 16 21 N -0.59 -27.19 5.09 -307.00 -1.56 -28.75 16 22 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 23 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 24 C -0.02 -1.03 5.50 84.92 0.47 -0.56 16 25 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 26 Si 0.97 37.93 27.74 68.60 1.90 39.83 16 27 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 28 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 29 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.47 7.57 -2.38 -0.02 1.46 16 33 H 0.07 1.68 7.01 -2.38 -0.02 1.67 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.13 0.73 7.63 -2.39 -0.02 0.71 16 36 H 0.11 1.20 7.96 -2.38 -0.02 1.19 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 1.04 5.98 -2.38 -0.01 1.02 16 40 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.38 4.66 9.05 -74.06 -0.67 3.99 16 44 H 0.11 0.60 5.95 -2.39 -0.01 0.59 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.09 1.08 7.42 -2.39 -0.02 1.07 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.34 10.52 8.18 -89.70 -0.73 9.79 16 49 H 0.08 1.72 7.41 -2.38 -0.02 1.70 16 50 H 0.11 2.64 8.06 -2.39 -0.02 2.62 16 51 H 0.39 14.58 5.76 -92.70 -0.53 14.04 16 52 H 0.28 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -85.81 405.64 -0.29 -86.09 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -1.05 Total: 42.89 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.39 Total: 12.67 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -6.20 Total: -118.77 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -1.33 Total: -62.72 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal Total: -85.81 -0.29 -86.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.600 kcal (2) G-P(sol) polarization free energy of solvation -85.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds