Wall clock time and date at job start Wed Apr 1 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.52859 * 2 1 4 4 C 1.53197 * 109.49888 * 239.92150 * 2 1 3 5 5 N 1.46957 * 108.89063 * 185.49515 * 4 2 1 6 6 C 1.34780 * 120.64915 * 233.53185 * 5 4 2 7 7 O 1.21271 * 120.00661 * 359.81649 * 6 5 4 8 8 C 1.50705 * 119.99400 * 179.81885 * 6 5 4 9 9 C 1.52999 * 109.46814 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47212 * 60.00335 * 9 8 6 11 11 C 1.53005 * 109.47318 * 179.97438 * 9 8 6 12 12 O 1.42901 * 109.47238 * 300.00086 * 9 8 6 13 13 C 1.46926 * 118.71783 * 53.35357 * 5 4 2 14 14 C 1.53191 * 108.89109 * 306.64359 * 13 5 4 15 15 C 1.53040 * 109.49694 * 120.08492 * 2 1 3 16 16 H 1.08994 * 109.45892 * 61.29609 * 15 2 1 17 17 N 1.46898 * 109.45864 * 301.33419 * 15 2 1 18 18 C 1.46900 * 110.99727 * 154.93526 * 17 15 2 19 19 C 1.50707 * 109.46828 * 180.02562 * 18 17 15 20 20 O 1.21293 * 120.00011 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99890 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00305 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99423 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00339 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00070 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00064 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46910 * 90.00350 * 26 24 22 28 28 H 1.48501 * 109.46987 * 210.00170 * 26 24 22 29 29 H 1.48499 * 109.47191 * 330.00248 * 26 24 22 30 30 H 1.09000 * 109.47211 * 299.92239 * 1 2 3 31 31 H 1.09002 * 109.47144 * 59.91368 * 1 2 3 32 32 H 1.08997 * 109.47437 * 179.91458 * 1 2 3 33 33 H 1.09001 * 109.58145 * 305.20506 * 4 2 1 34 34 H 1.08997 * 109.58684 * 65.48028 * 4 2 1 35 35 H 1.08994 * 109.47621 * 299.99921 * 8 6 5 36 36 H 1.09004 * 109.46918 * 60.00053 * 8 6 5 37 37 H 1.09003 * 109.47336 * 59.99283 * 10 9 8 38 38 H 1.08993 * 109.47472 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.46896 * 299.99879 * 10 9 8 40 40 H 1.09004 * 109.46627 * 60.00222 * 11 9 8 41 41 H 1.08993 * 109.47350 * 180.02562 * 11 9 8 42 42 H 1.08998 * 109.46831 * 300.00814 * 11 9 8 43 43 H 0.96699 * 114.00030 * 299.99706 * 12 9 8 44 44 H 1.09002 * 109.58861 * 186.78362 * 13 5 4 45 45 H 1.08996 * 109.58519 * 66.50253 * 13 5 4 46 46 H 1.09003 * 109.49294 * 174.51508 * 14 13 5 47 47 H 1.09001 * 109.49969 * 294.57596 * 14 13 5 48 48 H 1.00901 * 110.99929 * 278.88604 * 17 15 2 49 49 H 1.08997 * 109.46977 * 299.99654 * 18 17 15 50 50 H 1.08998 * 109.47474 * 60.00091 * 18 17 15 51 51 H 0.97006 * 120.00205 * 0.02562 * 21 19 18 52 52 H 0.96998 * 119.99807 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8322 -1.1713 6 6 4.2815 -0.3915 -2.1808 7 8 3.7738 0.0973 -3.1677 8 6 5.7809 -0.5063 -2.0831 9 6 6.4196 0.0622 -3.3518 10 6 6.0297 1.5339 -3.5036 11 6 7.9420 -0.0537 -3.2525 12 8 5.9586 -0.6723 -4.4876 13 6 4.1052 -1.4268 0.0307 14 6 3.5708 -0.6951 1.2659 15 6 2.0407 -0.7232 1.2483 16 1 1.6966 -1.7573 1.2351 17 7 1.5251 -0.0512 2.4485 18 6 1.4663 -0.9783 3.5865 19 6 0.9332 -0.2551 4.7965 20 8 0.6323 0.9173 4.7185 21 7 0.7908 -0.9111 5.9652 22 6 0.3063 -0.2532 7.0660 23 1 0.0384 0.7907 6.9966 24 6 0.1600 -0.9294 8.2710 25 7 -0.3049 -0.2988 9.3261 26 14 0.6227 -2.7352 8.3909 27 1 2.0501 -2.8555 8.7822 28 1 -0.2281 -3.3974 9.4121 29 1 0.4138 -3.3882 7.0736 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6051 -1.7215 -1.2981 34 1 1.7615 -0.1592 -2.1390 35 1 6.1326 0.0536 -1.2166 36 1 6.0588 -1.5549 -1.9754 37 1 6.3812 2.0942 -2.6373 38 1 6.4850 1.9391 -4.4072 39 1 4.9451 1.6169 -3.5742 40 1 8.2202 -1.1020 -3.1441 41 1 8.3970 0.3518 -4.1561 42 1 8.2933 0.5068 -2.3862 43 1 6.1714 -1.6152 -4.4590 44 1 5.1896 -1.3248 -0.0138 45 1 3.8397 -2.4824 0.0878 46 1 3.9334 -1.1899 2.1670 47 1 3.9164 0.3386 1.2544 48 1 2.0780 0.7624 2.6731 49 1 0.8077 -1.8118 3.3425 50 1 2.4664 -1.3557 3.7998 51 1 1.0317 -1.8487 6.0276 52 1 -0.4074 -0.7710 10.1672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667169520.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:56 Heat of formation + Delta-G solvation = -150.251485 kcal Electronic energy + Delta-G solvation = -30691.197930 eV Core-core repulsion = 26496.294367 eV Total energy + Delta-G solvation = -4194.903563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50820 -40.37322 -39.53929 -38.18672 -36.30294 -35.78478 -34.28086 -33.72707 -33.49635 -31.93837 -29.79562 -28.57353 -28.17494 -27.09737 -26.05648 -24.30690 -23.22978 -21.84547 -21.38403 -21.04507 -20.32181 -19.92351 -18.24211 -17.76093 -17.58878 -16.98264 -16.66664 -16.49068 -16.30914 -15.96228 -15.70389 -15.60320 -15.33698 -15.29290 -14.93042 -14.68447 -14.44741 -14.35985 -14.01232 -13.75627 -13.42418 -13.39269 -13.27106 -13.10529 -13.04254 -12.97063 -12.89283 -12.73190 -12.69454 -12.47567 -12.40295 -12.27890 -11.97250 -11.90999 -11.73595 -11.62640 -11.49543 -11.38592 -10.99230 -10.47458 -10.40381 -10.23511 -9.61357 -9.18325 -8.39956 -6.01060 1.31349 1.37007 1.46289 1.71352 1.98598 2.04264 2.24581 2.74249 3.16751 3.35436 3.41263 3.57488 3.66986 3.80285 3.91614 4.00435 4.05317 4.10892 4.19984 4.24796 4.33348 4.43789 4.46785 4.54101 4.57687 4.59872 4.62053 4.73582 4.75720 4.77279 4.81848 4.83802 4.91685 4.98389 5.04229 5.10310 5.16273 5.20277 5.30139 5.35615 5.43290 5.49728 5.54637 5.65144 5.93635 6.12871 6.40975 6.48843 6.61584 6.90091 6.98958 7.29909 7.41908 7.99388 8.77795 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002017 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.336684 B =13881.409774 C =14387.892149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.122 3.878 5 N -0.615 5.615 6 C 0.507 3.493 7 O -0.565 6.565 8 C -0.162 4.162 9 C 0.140 3.860 10 C -0.156 4.156 11 C -0.171 4.171 12 O -0.571 6.571 13 C 0.112 3.888 14 C -0.164 4.164 15 C 0.096 3.904 16 H 0.094 0.906 17 N -0.679 5.679 18 C 0.065 3.935 19 C 0.448 3.552 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.019 4.019 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.255 1.255 28 H -0.278 1.278 29 H -0.229 1.229 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.382 0.618 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.342 0.658 49 H 0.112 0.888 50 H 0.082 0.918 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.494 -11.446 -23.942 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.070 0.930 4 C -0.001 4.001 5 N -0.348 5.348 6 C 0.297 3.703 7 O -0.444 6.444 8 C -0.202 4.202 9 C 0.099 3.901 10 C -0.213 4.213 11 C -0.229 4.229 12 O -0.378 6.378 13 C -0.011 4.011 14 C -0.204 4.204 15 C -0.013 4.013 16 H 0.112 0.888 17 N -0.309 5.309 18 C -0.067 4.067 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.203 1.203 29 H -0.152 1.152 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.230 0.770 44 H 0.128 0.872 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.161 0.839 49 H 0.130 0.870 50 H 0.100 0.900 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.081 -9.896 -24.640 31.573 hybrid contribution 0.644 -0.694 1.226 1.549 sum 17.725 -10.590 -23.414 31.218 Atomic orbital electron populations 1.21573 0.94154 1.02063 1.01246 1.21318 0.96472 0.98905 0.93561 0.92960 1.21560 0.79775 1.01038 0.97744 1.48313 1.06577 1.61168 1.18725 1.21135 0.90587 0.76736 0.81847 1.90675 1.76182 1.45259 1.32284 1.22550 0.90338 1.05868 1.01459 1.20991 0.93051 0.91984 0.84029 1.21997 1.03024 0.94247 1.01997 1.22443 0.93457 1.03770 1.03211 1.86687 1.82311 1.24924 1.43871 1.21894 0.99556 0.97668 0.81969 1.22673 0.96403 1.01820 0.99461 1.21667 0.92540 0.98397 0.88736 0.88782 1.60105 1.58887 1.08655 1.03295 1.21647 1.01699 0.95376 0.87986 1.21100 0.82577 0.87750 0.85003 1.90555 1.55254 1.19157 1.85128 1.42032 1.59817 1.12259 1.09209 1.18988 1.41535 0.96524 0.88671 0.92928 1.26169 0.96513 1.05125 0.93875 1.69817 1.45981 1.39780 1.02116 0.85336 0.79380 0.76300 0.80306 1.17964 1.20307 1.15208 0.92993 0.93216 0.92024 0.90168 0.91090 0.86190 0.85677 0.90517 0.92978 0.92324 0.90342 0.92322 0.90287 0.76952 0.87173 0.89183 0.88978 0.92107 0.83918 0.86983 0.90010 0.77414 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.03 71.98 0.65 -2.26 16 2 C -0.08 -1.64 2.60 -10.72 -0.03 -1.67 16 3 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.12 2.21 5.71 86.36 0.49 2.70 16 5 N -0.61 -9.33 2.98 -818.82 -2.44 -11.77 16 6 C 0.51 9.28 7.26 87.66 0.64 9.92 16 7 O -0.57 -15.74 12.38 14.45 0.18 -15.57 16 8 C -0.16 -1.58 3.30 29.85 0.10 -1.48 16 9 C 0.14 1.87 0.98 -10.79 -0.01 1.86 16 10 C -0.16 -2.83 8.52 71.98 0.61 -2.22 16 11 C -0.17 -1.29 8.82 71.98 0.63 -0.66 16 12 O -0.57 -10.07 11.88 -131.53 -1.56 -11.63 16 13 C 0.11 0.95 6.34 86.36 0.55 1.50 16 14 C -0.16 -2.05 5.33 30.67 0.16 -1.89 16 15 C 0.10 1.71 1.89 44.94 0.08 1.79 16 16 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 17 N -0.68 -17.91 5.05 -495.44 -2.50 -20.42 16 18 C 0.07 1.77 5.96 85.56 0.51 2.28 16 19 C 0.45 19.35 7.82 87.66 0.69 20.03 16 20 O -0.62 -33.58 15.78 -3.07 -0.05 -33.63 16 21 N -0.59 -26.91 5.09 -306.98 -1.56 -28.47 16 22 C -0.33 -18.95 10.16 84.04 0.85 -18.09 16 23 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -1.01 5.50 84.92 0.47 -0.55 16 25 N -0.94 -56.10 13.96 21.66 0.30 -55.79 16 26 Si 0.97 37.63 27.74 68.60 1.90 39.53 16 27 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 28 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 29 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 30 H 0.05 1.45 7.57 -2.39 -0.02 1.43 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.63 7.02 -2.39 -0.02 1.61 16 35 H 0.12 0.73 7.69 -2.39 -0.02 0.71 16 36 H 0.13 0.44 7.94 -2.38 -0.02 0.42 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.49 5.51 -2.38 -0.01 1.47 16 40 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.38 3.45 9.05 -74.06 -0.67 2.78 16 44 H 0.11 0.39 5.93 -2.39 -0.01 0.37 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 0.95 7.43 -2.39 -0.02 0.93 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.34 10.08 8.18 -89.69 -0.73 9.35 16 49 H 0.11 2.56 8.05 -2.39 -0.02 2.54 16 50 H 0.08 1.66 7.41 -2.39 -0.02 1.65 16 51 H 0.39 14.41 5.76 -92.70 -0.53 13.87 16 52 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -85.65 405.40 -0.39 -86.04 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -1.05 Total: 40.46 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.40 Total: 11.26 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -6.20 Total: -116.45 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.43 Total: -60.83 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -85.65 -0.39 -86.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667169520.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.216 kcal (2) G-P(sol) polarization free energy of solvation -85.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds