Wall clock time and date at job start Wed Apr 1 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46889 * 2 1 4 4 O 1.42897 * 109.46728 * 120.00112 * 2 1 3 5 5 C 1.42901 * 113.99892 * 90.00327 * 4 2 1 6 6 C 1.52998 * 109.46970 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47422 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99605 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00574 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00210 * 180.02562 * 9 7 6 11 11 C 1.53004 * 110.35512 * 57.85960 * 10 9 7 12 12 C 1.54594 * 110.31020 * 295.71635 * 10 9 7 13 13 C 1.54933 * 102.92252 * 263.04295 * 12 10 9 14 14 N 1.48534 * 103.22824 * 322.58255 * 13 12 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 12 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00009 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47177 * 89.99959 * 23 21 19 25 25 H 1.48505 * 109.47036 * 210.00243 * 23 21 19 26 26 H 1.48499 * 109.46776 * 329.99732 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 12 28 28 H 1.08991 * 109.47213 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 300.00093 * 1 2 3 30 30 H 1.09002 * 109.47235 * 59.99819 * 1 2 3 31 31 H 1.08998 * 109.46698 * 240.00096 * 2 1 3 32 32 H 1.09005 * 109.46951 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47580 * 299.99870 * 3 2 1 34 34 H 1.08998 * 109.47372 * 60.00508 * 3 2 1 35 35 H 1.08993 * 109.47050 * 59.99995 * 5 4 2 36 36 H 1.08997 * 109.46619 * 299.99431 * 5 4 2 37 37 H 1.09004 * 109.47465 * 59.99804 * 6 5 4 38 38 H 1.09001 * 109.47148 * 299.99883 * 6 5 4 39 39 H 0.97005 * 119.99376 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.47015 * 182.14527 * 11 10 9 41 41 H 1.09001 * 109.46533 * 302.14189 * 11 10 9 42 42 H 1.08999 * 109.46789 * 62.13778 * 11 10 9 43 43 H 1.09002 * 110.71950 * 21.39927 * 12 10 9 44 44 H 1.09000 * 110.72900 * 144.50567 * 12 10 9 45 45 H 1.08997 * 110.67236 * 204.14971 * 13 12 10 46 46 H 1.09001 * 110.67169 * 81.02116 * 13 12 10 47 47 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 48 48 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 49 49 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 50 50 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 52 52 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9885 6 6 2.7089 -2.6925 2.2941 7 6 2.9127 -4.1738 2.1065 8 8 2.6747 -4.6875 1.0338 9 7 3.3603 -4.9276 3.1301 10 6 3.5589 -6.3675 2.9475 11 6 4.5430 -6.6283 1.8053 12 6 2.2084 -7.0634 2.6615 13 6 1.7904 -7.5948 4.0555 14 7 3.0792 -8.0248 4.6558 15 6 2.9766 -8.1085 6.1188 16 6 1.7956 -8.9673 6.4913 17 8 1.1074 -9.4615 5.6233 18 7 1.5048 -9.1871 7.7889 19 6 0.4307 -9.9688 8.1277 20 1 -0.1826 -10.4082 7.3548 21 6 0.1305 -10.1950 9.4653 22 7 -0.8987 -10.9447 9.7902 23 14 1.1909 -9.4344 10.8020 24 1 0.6499 -8.0996 11.1634 25 1 1.1830 -10.3125 11.9996 26 1 2.5826 -9.2868 10.3056 27 6 4.0721 -7.0059 4.2515 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.9319 -2.2466 0.1987 36 1 1.2537 -2.5433 0.7124 37 1 1.9773 -2.5240 3.0844 38 1 3.6553 -2.2273 2.5699 39 1 3.5516 -4.5165 3.9877 40 1 4.6509 -7.7027 1.6570 41 1 4.1668 -6.1711 0.8902 42 1 5.5122 -6.1968 2.0553 43 1 1.4772 -6.3472 2.2866 44 1 2.3390 -7.8841 1.9561 45 1 1.1107 -8.4411 3.9567 46 1 1.3352 -6.8018 4.6489 47 1 2.8432 -7.1084 6.5315 48 1 3.8882 -8.5493 6.5223 49 1 2.0554 -8.7921 8.4829 50 1 -1.1084 -11.1023 10.7240 51 1 4.1608 -6.2455 5.0274 52 1 5.0400 -7.4775 4.0816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671613282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:35 Heat of formation + Delta-G solvation = -109.372904 kcal Electronic energy + Delta-G solvation = -30110.764241 eV Core-core repulsion = 25917.633307 eV Total energy + Delta-G solvation = -4193.130935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69080 -39.19013 -38.60550 -37.66872 -34.72656 -33.87342 -33.72368 -32.09964 -31.70289 -30.58748 -29.55052 -27.67338 -27.63533 -25.50764 -24.33263 -23.58743 -21.73161 -21.62384 -20.57487 -19.73391 -19.39038 -18.31478 -17.72065 -16.75882 -16.40094 -16.23621 -16.01993 -15.48795 -15.23299 -15.01212 -14.80252 -14.62493 -14.29859 -13.98635 -13.65710 -13.51653 -13.32399 -13.18573 -13.09142 -12.82239 -12.69675 -12.62010 -12.49681 -12.25502 -12.13883 -12.07400 -11.85088 -11.78084 -11.53231 -11.36982 -11.25933 -11.05357 -11.03550 -10.86562 -10.82728 -10.61178 -10.00594 -9.91632 -9.85678 -9.59100 -9.22354 -8.53051 -8.23627 -8.07122 -6.34200 -3.85877 2.40761 2.68751 2.99727 3.03576 3.12461 3.47204 3.68366 4.04552 4.08406 4.30304 4.42420 4.53081 4.61023 4.65824 4.70900 4.77252 4.84851 4.87123 4.88736 5.13332 5.17852 5.19085 5.26813 5.30376 5.38460 5.42756 5.44620 5.47810 5.50617 5.52738 5.55464 5.64046 5.75372 5.76041 5.76756 5.82888 5.85278 5.91836 6.04393 6.19907 6.24758 6.43738 6.62858 6.87040 7.07838 7.13316 7.28965 7.54594 8.00171 8.11278 8.56069 8.91747 9.38506 9.78587 10.78748 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.001981 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.782638 B =14130.805055 C =15064.965095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.079 3.921 6 C -0.141 4.141 7 C 0.520 3.480 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.163 3.837 11 C -0.155 4.155 12 C -0.123 4.123 13 C 0.036 3.964 14 N -0.491 5.491 15 C 0.033 3.967 16 C 0.450 3.550 17 O -0.561 6.561 18 N -0.588 5.588 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.034 3.966 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.399 0.601 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.035 0.965 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.047 0.953 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 22.443 -15.045 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.307 6.307 5 C 0.002 3.998 6 C -0.181 4.181 7 C 0.306 3.694 8 O -0.412 6.412 9 N -0.372 5.372 10 C 0.077 3.923 11 C -0.213 4.213 12 C -0.162 4.162 13 C -0.091 4.091 14 N -0.216 5.216 15 C -0.098 4.098 16 C 0.236 3.764 17 O -0.443 6.443 18 N -0.227 5.227 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.095 4.095 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.065 0.935 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.915 21.185 -16.224 28.830 hybrid contribution 0.603 1.419 2.024 2.545 sum 11.518 22.604 -14.200 29.073 Atomic orbital electron populations 1.22310 0.95903 1.02601 1.02607 1.22069 0.93736 0.93662 0.88058 1.21867 1.01755 0.94504 1.02561 1.87846 1.86745 1.20093 1.36010 1.22126 1.00534 0.80946 0.96201 1.21497 1.04479 0.92096 1.00070 1.20327 0.76477 0.88492 0.84096 1.90692 1.50226 1.74288 1.25950 1.46259 1.67846 1.08504 1.14579 1.21201 0.96537 0.78925 0.95595 1.22168 0.97554 1.02592 0.98960 1.22920 0.95241 0.99916 0.98105 1.23543 0.92368 1.00577 0.92582 1.64681 1.06558 1.42578 1.07758 1.22155 0.99525 0.98960 0.89202 1.19586 0.87426 0.86213 0.83166 1.90491 1.52760 1.53392 1.47671 1.42191 1.28328 1.46653 1.05547 1.19430 1.04479 1.25401 0.94085 0.86222 1.25041 0.96738 0.97124 0.97220 1.69617 1.26682 1.37079 1.18581 0.86677 0.80340 0.79932 0.82474 1.19672 1.20117 1.19471 1.23260 0.97832 0.93783 0.94585 0.92301 0.91723 0.91631 0.92119 0.92024 0.91232 0.91760 0.92484 0.92385 0.88042 0.88143 0.76662 0.91121 0.90248 0.92949 0.90690 0.89925 0.86169 0.94679 0.93326 0.89005 0.79704 0.91574 0.93510 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.53 37.16 0.35 -0.84 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 4 O -0.39 -3.58 9.99 -35.23 -0.35 -3.93 16 5 C 0.08 0.71 5.04 37.16 0.19 0.89 16 6 C -0.14 -1.11 6.07 -27.88 -0.17 -1.28 16 7 C 0.52 5.36 7.02 -10.99 -0.08 5.28 16 8 O -0.53 -7.23 12.87 5.55 0.07 -7.15 16 9 N -0.72 -6.76 5.15 -46.35 -0.24 -7.00 16 10 C 0.16 1.85 0.94 -130.46 -0.12 1.73 16 11 C -0.15 -1.67 8.16 37.16 0.30 -1.37 16 12 C -0.12 -1.71 5.85 -24.87 -0.15 -1.86 16 13 C 0.04 0.60 5.30 -1.90 -0.01 0.59 16 14 N -0.49 -7.69 5.26 -231.88 -1.22 -8.91 16 15 C 0.03 0.54 5.52 -4.97 -0.03 0.52 16 16 C 0.45 10.00 7.49 -10.98 -0.08 9.92 16 17 O -0.56 -14.52 13.10 5.55 0.07 -14.45 16 18 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 19 C -0.31 -8.52 10.16 -14.94 -0.15 -8.68 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 27 C 0.03 0.39 6.15 -2.75 -0.02 0.37 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 36 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 2.79 8.09 -40.82 -0.33 2.46 16 40 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.08 0.98 6.04 -51.93 -0.31 0.67 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.09 6.81 -51.93 -0.35 0.74 16 44 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 45 H 0.12 2.43 5.97 -51.93 -0.31 2.12 16 46 H 0.03 0.58 8.02 -51.93 -0.42 0.17 16 47 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.05 0.46 6.89 -51.93 -0.36 0.10 16 52 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -33.33 409.04 -8.24 -41.56 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -8.95 Total: 11.55 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.21 Total: 6.32 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.74 Total: -54.44 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.21 Total: -25.53 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.33 -8.24 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671613282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.812 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds