Wall clock time and date at job start Wed Apr 1 2020 00:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46889 * 2 1 4 4 O 1.42897 * 109.46728 * 120.00112 * 2 1 3 5 5 C 1.42901 * 113.99892 * 90.00327 * 4 2 1 6 6 C 1.52998 * 109.46970 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47422 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99605 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00574 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00210 * 180.02562 * 9 7 6 11 11 C 1.53004 * 110.35512 * 57.85960 * 10 9 7 12 12 C 1.54594 * 110.31020 * 295.71635 * 10 9 7 13 13 C 1.54933 * 102.92252 * 263.04295 * 12 10 9 14 14 N 1.48534 * 103.22824 * 322.58255 * 13 12 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 12 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00009 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47177 * 89.99959 * 23 21 19 25 25 H 1.48505 * 109.47036 * 210.00243 * 23 21 19 26 26 H 1.48499 * 109.46776 * 329.99732 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 12 28 28 H 1.08991 * 109.47213 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 300.00093 * 1 2 3 30 30 H 1.09002 * 109.47235 * 59.99819 * 1 2 3 31 31 H 1.08998 * 109.46698 * 240.00096 * 2 1 3 32 32 H 1.09005 * 109.46951 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47580 * 299.99870 * 3 2 1 34 34 H 1.08998 * 109.47372 * 60.00508 * 3 2 1 35 35 H 1.08993 * 109.47050 * 59.99995 * 5 4 2 36 36 H 1.08997 * 109.46619 * 299.99431 * 5 4 2 37 37 H 1.09004 * 109.47465 * 59.99804 * 6 5 4 38 38 H 1.09001 * 109.47148 * 299.99883 * 6 5 4 39 39 H 0.97005 * 119.99376 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.47015 * 182.14527 * 11 10 9 41 41 H 1.09001 * 109.46533 * 302.14189 * 11 10 9 42 42 H 1.08999 * 109.46789 * 62.13778 * 11 10 9 43 43 H 1.09002 * 110.71950 * 21.39927 * 12 10 9 44 44 H 1.09000 * 110.72900 * 144.50567 * 12 10 9 45 45 H 1.08997 * 110.67236 * 204.14971 * 13 12 10 46 46 H 1.09001 * 110.67169 * 81.02116 * 13 12 10 47 47 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 48 48 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 49 49 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 50 50 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 52 52 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9885 6 6 2.7089 -2.6925 2.2941 7 6 2.9127 -4.1738 2.1065 8 8 2.6747 -4.6875 1.0338 9 7 3.3603 -4.9276 3.1301 10 6 3.5589 -6.3675 2.9475 11 6 4.5430 -6.6283 1.8053 12 6 2.2084 -7.0634 2.6615 13 6 1.7904 -7.5948 4.0555 14 7 3.0792 -8.0248 4.6558 15 6 2.9766 -8.1085 6.1188 16 6 1.7956 -8.9673 6.4913 17 8 1.1074 -9.4615 5.6233 18 7 1.5048 -9.1871 7.7889 19 6 0.4307 -9.9688 8.1277 20 1 -0.1826 -10.4082 7.3548 21 6 0.1305 -10.1950 9.4653 22 7 -0.8987 -10.9447 9.7902 23 14 1.1909 -9.4344 10.8020 24 1 0.6499 -8.0996 11.1634 25 1 1.1830 -10.3125 11.9996 26 1 2.5826 -9.2868 10.3056 27 6 4.0721 -7.0059 4.2515 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.9319 -2.2466 0.1987 36 1 1.2537 -2.5433 0.7124 37 1 1.9773 -2.5240 3.0844 38 1 3.6553 -2.2273 2.5699 39 1 3.5516 -4.5165 3.9877 40 1 4.6509 -7.7027 1.6570 41 1 4.1668 -6.1711 0.8902 42 1 5.5122 -6.1968 2.0553 43 1 1.4772 -6.3472 2.2866 44 1 2.3390 -7.8841 1.9561 45 1 1.1107 -8.4411 3.9567 46 1 1.3352 -6.8018 4.6489 47 1 2.8432 -7.1084 6.5315 48 1 3.8882 -8.5493 6.5223 49 1 2.0554 -8.7921 8.4829 50 1 -1.1084 -11.1023 10.7240 51 1 4.1608 -6.2455 5.0274 52 1 5.0400 -7.4775 4.0816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671613282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:34 Heat of formation + Delta-G solvation = -136.400033 kcal Electronic energy + Delta-G solvation = -30111.936226 eV Core-core repulsion = 25917.633307 eV Total energy + Delta-G solvation = -4194.302919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64896 -40.52106 -39.48741 -38.88578 -36.17980 -35.43806 -34.35228 -33.78696 -32.94579 -31.45413 -30.57401 -28.99534 -28.13089 -26.89734 -25.51505 -24.72707 -22.80651 -22.29152 -21.47187 -21.32975 -20.62184 -20.12271 -18.45213 -17.89178 -17.46267 -17.18117 -17.02703 -16.78258 -16.47149 -16.08076 -15.99826 -15.66983 -15.51252 -15.05365 -14.85253 -14.66395 -14.55206 -14.34193 -14.14639 -13.99673 -13.79929 -13.55369 -13.37189 -13.17853 -13.08319 -12.99098 -12.96165 -12.75684 -12.45123 -12.41475 -12.38336 -12.26085 -12.11965 -12.00068 -11.95880 -11.88401 -11.62125 -11.47423 -10.73447 -10.57182 -10.31167 -10.24402 -10.03503 -9.35660 -8.41195 -6.02341 1.30357 1.35693 1.45074 1.61585 1.93605 1.94758 2.23301 2.66382 2.86260 3.14772 3.18950 3.45961 3.71414 3.74929 3.93615 3.93839 4.01369 4.13682 4.16926 4.18504 4.24409 4.29341 4.33667 4.40215 4.47036 4.51801 4.60669 4.68888 4.75052 4.80781 4.81732 4.83517 4.89800 4.90470 4.92889 4.97193 4.98665 5.10069 5.24130 5.27039 5.32362 5.33808 5.52404 5.54377 5.83895 5.92165 6.06179 6.23959 6.55299 6.59404 6.88694 7.24990 7.39056 7.96955 8.76408 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.001981 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.782638 B =14130.805055 C =15064.965095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.397 6.397 5 C 0.081 3.919 6 C -0.132 4.132 7 C 0.518 3.482 8 O -0.571 6.571 9 N -0.709 5.709 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.116 4.116 13 C 0.043 3.957 14 N -0.511 5.511 15 C 0.044 3.956 16 C 0.447 3.553 17 O -0.607 6.607 18 N -0.589 5.589 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.229 1.229 27 C 0.039 3.961 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.415 0.585 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.031 0.969 47 H 0.085 0.915 48 H 0.125 0.875 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.079 0.921 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 25.667 -13.507 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.317 6.317 5 C 0.004 3.996 6 C -0.171 4.171 7 C 0.306 3.694 8 O -0.451 6.451 9 N -0.362 5.362 10 C 0.084 3.916 11 C -0.207 4.207 12 C -0.155 4.155 13 C -0.085 4.085 14 N -0.236 5.236 15 C -0.087 4.087 16 C 0.235 3.765 17 O -0.491 6.491 18 N -0.231 5.231 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.152 1.152 27 C -0.089 4.089 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.103 0.897 48 H 0.143 0.857 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.782 24.443 -14.684 32.118 hybrid contribution -0.700 0.369 1.369 1.581 sum 14.082 24.812 -13.315 31.484 Atomic orbital electron populations 1.22301 0.95664 1.02049 1.03238 1.22285 0.94057 0.94457 0.87648 1.21864 1.01755 0.93446 1.03255 1.87825 1.86886 1.20003 1.37017 1.22059 0.99680 0.81038 0.96863 1.21448 1.05956 0.90097 0.99638 1.20755 0.75619 0.89459 0.83584 1.90691 1.51733 1.75117 1.27527 1.46116 1.67357 1.07554 1.15218 1.21036 0.94660 0.79814 0.96132 1.22096 0.98245 1.02453 0.97870 1.22789 0.96965 0.99554 0.96239 1.23231 0.92518 0.98496 0.94250 1.64625 1.06554 1.45005 1.07444 1.22140 0.97251 0.99372 0.89906 1.20899 0.88180 0.85293 0.82149 1.90512 1.54680 1.54903 1.48994 1.42004 1.27660 1.46694 1.06741 1.18985 1.06089 1.27253 0.93372 0.92813 1.26140 0.98239 0.97146 0.99959 1.69808 1.29160 1.38945 1.19658 0.85357 0.79774 0.78897 0.77435 1.18128 1.20163 1.15175 1.23332 0.96929 0.93658 0.94969 0.93430 0.92046 0.90047 0.91885 0.91998 0.89562 0.92047 0.92964 0.93953 0.86909 0.85726 0.74761 0.91376 0.92069 0.90732 0.91789 0.91075 0.91008 0.95032 0.89730 0.85717 0.77441 0.91177 0.90340 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.53 71.98 0.69 -1.57 16 2 C 0.07 1.00 3.34 30.59 0.10 1.11 16 3 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 4 O -0.40 -6.90 9.99 -148.98 -1.49 -8.39 16 5 C 0.08 1.39 5.04 71.98 0.36 1.75 16 6 C -0.13 -1.78 6.07 29.85 0.18 -1.59 16 7 C 0.52 9.81 7.02 87.66 0.62 10.43 16 8 O -0.57 -15.29 12.87 -3.06 -0.04 -15.33 16 9 N -0.71 -11.24 5.15 -418.95 -2.16 -13.39 16 10 C 0.17 3.46 0.94 4.48 0.00 3.46 16 11 C -0.15 -2.89 8.16 71.98 0.59 -2.31 16 12 C -0.12 -3.27 5.85 31.80 0.19 -3.08 16 13 C 0.04 1.43 5.30 86.65 0.46 1.89 16 14 N -0.51 -14.89 5.26 -887.54 -4.67 -19.56 16 15 C 0.04 1.29 5.52 85.56 0.47 1.76 16 16 C 0.45 19.76 7.49 87.66 0.66 20.41 16 17 O -0.61 -33.04 13.10 -3.07 -0.04 -33.08 16 18 N -0.59 -27.24 5.09 -306.98 -1.56 -28.80 16 19 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 20 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 21 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 22 N -0.94 -56.30 13.96 21.66 0.30 -56.00 16 23 Si 0.97 38.07 27.74 68.60 1.90 39.97 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 27 C 0.04 0.73 6.15 86.44 0.53 1.26 16 28 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.93 8.04 -2.39 -0.02 0.91 16 36 H 0.04 0.84 7.83 -2.39 -0.02 0.83 16 37 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.41 3.98 8.09 -92.70 -0.75 3.23 16 40 H 0.07 1.35 8.11 -2.39 -0.02 1.34 16 41 H 0.06 1.46 6.04 -2.39 -0.01 1.44 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.92 6.81 -2.39 -0.02 1.90 16 44 H 0.07 2.13 7.84 -2.39 -0.02 2.11 16 45 H 0.07 3.12 5.97 -2.39 -0.01 3.10 16 46 H 0.03 1.05 8.02 -2.39 -0.02 1.03 16 47 H 0.08 1.92 7.81 -2.39 -0.02 1.90 16 48 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.39 14.71 5.76 -92.71 -0.53 14.17 16 50 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 51 H 0.08 1.03 6.89 -2.39 -0.02 1.01 16 52 H 0.11 1.74 7.69 -2.39 -0.02 1.72 16 Total: -1.00 -80.83 409.04 -1.32 -82.15 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.42 Total: 38.37 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.85 Total: 14.06 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -8.09 Total: -117.75 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.57 Total: -56.80 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Total: -80.83 -1.32 -82.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671613282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.250 kcal (2) G-P(sol) polarization free energy of solvation -80.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds