Wall clock time and date at job start Wed Apr 1 2020 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42898 * 114.00068 * 270.00142 * 4 2 1 6 6 C 1.50698 * 109.47376 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99943 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00263 * 179.97438 * 6 5 4 9 9 C 1.47426 * 125.64690 * 359.68791 * 8 6 5 10 10 C 1.55126 * 104.72236 * 155.81964 * 9 8 6 11 11 H 1.08998 * 110.91028 * 155.27736 * 10 9 8 12 12 C 1.52998 * 111.22577 * 279.17912 * 10 9 8 13 13 C 1.55158 * 101.48612 * 37.29441 * 10 9 8 14 14 H 1.09001 * 110.87060 * 82.76728 * 13 10 9 15 15 C 1.53001 * 110.71965 * 205.96845 * 13 10 9 16 16 N 1.46906 * 109.46854 * 179.97438 * 15 13 10 17 17 C 1.46903 * 110.99949 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47139 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00184 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00135 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00319 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99796 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00193 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00125 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46913 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46542 * 119.99976 * 25 23 21 28 28 H 1.48500 * 109.47112 * 239.99922 * 25 23 21 29 29 C 1.47020 * 125.65040 * 179.97438 * 8 6 5 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47066 * 299.99587 * 5 4 2 38 38 H 1.08994 * 109.47737 * 59.99412 * 5 4 2 39 39 H 1.08999 * 110.36901 * 274.74714 * 9 8 6 40 40 H 1.08998 * 110.36241 * 37.07138 * 9 8 6 41 41 H 1.08995 * 109.47524 * 172.20500 * 12 10 9 42 42 H 1.09004 * 109.47040 * 292.20651 * 12 10 9 43 43 H 1.08997 * 109.47276 * 52.20462 * 12 10 9 44 44 H 1.08999 * 109.47433 * 299.97553 * 15 13 10 45 45 H 1.09001 * 109.47303 * 59.98184 * 15 13 10 46 46 H 1.00894 * 111.00143 * 56.04721 * 16 15 13 47 47 H 1.09003 * 109.46836 * 300.00188 * 17 16 15 48 48 H 1.09006 * 109.47140 * 59.99580 * 17 16 15 49 49 H 0.97005 * 119.99738 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00370 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.88170 * 300.44177 * 29 8 6 52 52 H 1.08999 * 109.88175 * 61.44894 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 -2.0781 -0.9887 6 6 2.7003 -2.6833 -2.2750 7 8 2.8733 -1.9811 -3.2485 8 7 2.9553 -4.0050 -2.3435 9 6 2.7958 -4.9692 -1.2397 10 6 2.5976 -6.3397 -1.9390 11 1 2.8965 -7.1576 -1.2835 12 6 1.1527 -6.5178 -2.4093 13 6 3.5638 -6.2130 -3.1464 14 1 4.5853 -6.4555 -2.8534 15 6 3.1073 -7.1070 -4.3011 16 7 4.0393 -6.9656 -5.4278 17 6 3.6314 -7.8111 -6.5577 18 6 4.6085 -7.6394 -7.6920 19 8 5.5517 -6.8864 -7.5713 20 7 4.4344 -8.3225 -8.8408 21 6 5.3230 -8.1659 -9.8729 22 1 6.1623 -7.4948 -9.7657 23 6 5.1431 -8.8698 -11.0573 24 7 4.1210 -9.6852 -11.1884 25 14 6.3536 -8.6558 -12.4640 26 1 7.4070 -7.6871 -12.0675 27 1 6.9785 -9.9647 -12.7825 28 1 5.6371 -8.1452 -13.6603 29 6 3.4443 -4.7229 -3.5296 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 2.9320 -2.2467 -0.1987 38 1 1.2539 -2.5433 -0.7125 39 1 3.6902 -4.9843 -0.6169 40 1 1.9198 -4.7190 -0.6412 41 1 1.0762 -7.4212 -3.0143 42 1 0.4966 -6.6040 -1.5431 43 1 0.8557 -5.6551 -3.0055 44 1 3.0905 -8.1459 -3.9716 45 1 2.1074 -6.8098 -4.6173 46 1 4.9848 -7.1733 -5.1432 47 1 3.6179 -8.8549 -6.2441 48 1 2.6351 -7.5185 -6.8894 49 1 3.6798 -8.9244 -8.9375 50 1 3.9956 -10.1769 -12.0151 51 1 2.7371 -4.6068 -4.3510 52 1 4.4195 -4.3339 -3.8225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672260475.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:56 Heat of formation + Delta-G solvation = -120.790955 kcal Electronic energy + Delta-G solvation = -29641.472221 eV Core-core repulsion = 25447.846163 eV Total energy + Delta-G solvation = -4193.626058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53932 -39.00054 -38.24343 -37.72111 -35.37662 -33.85793 -33.18464 -32.84526 -31.21452 -30.47216 -28.60811 -27.61355 -27.01098 -26.62242 -24.79418 -23.50057 -22.24918 -21.73311 -19.84677 -19.63490 -19.09138 -17.86484 -17.51811 -17.23026 -16.56876 -16.07689 -16.01128 -15.65930 -15.39773 -14.79304 -14.60251 -14.54767 -14.34990 -14.02482 -13.80022 -13.56830 -13.35894 -13.28997 -13.08377 -12.91196 -12.63749 -12.60586 -12.46653 -12.33211 -12.20601 -12.15254 -11.84110 -11.74215 -11.54969 -11.48567 -11.15120 -11.07349 -10.98585 -10.87682 -10.70533 -10.32121 -10.20052 -10.05432 -9.87762 -9.49683 -8.79084 -8.44457 -8.04863 -7.93531 -6.39673 -3.80260 2.44244 2.46054 3.18397 3.28880 3.36550 3.50532 3.92259 3.96763 4.12072 4.17853 4.31596 4.43937 4.52785 4.60294 4.68024 4.69969 4.74940 4.84487 4.88810 5.04495 5.08991 5.13734 5.18427 5.20249 5.25574 5.28513 5.28976 5.37924 5.43646 5.45575 5.54451 5.59105 5.69496 5.77200 5.77806 5.81684 5.82189 5.91283 5.98865 6.03905 6.09096 6.17395 6.28602 6.75945 7.19702 7.31021 7.57770 7.65494 8.03295 8.09015 8.63662 9.20461 9.56760 10.08308 10.78188 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.001750 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.119532 B =15995.056896 C =16972.021407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.051 3.949 6 C 0.525 3.475 7 O -0.513 6.513 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.099 4.099 11 H 0.092 0.908 12 C -0.147 4.147 13 C -0.091 4.091 14 H 0.087 0.913 15 C 0.068 3.932 16 N -0.669 5.669 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.077 0.923 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 8.798 28.877 31.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.029 4.029 6 C 0.312 3.688 7 O -0.387 6.387 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.118 4.118 11 H 0.110 0.890 12 C -0.204 4.204 13 C -0.111 4.111 14 H 0.105 0.895 15 C -0.062 4.062 16 N -0.302 5.302 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.317 10.355 27.819 31.112 hybrid contribution 0.192 -1.513 -0.188 1.536 sum -9.125 8.843 27.631 30.413 Atomic orbital electron populations 1.22317 0.95798 1.02393 1.02883 1.22176 0.93816 0.94103 0.87767 1.21855 1.02011 0.94175 1.02688 1.88085 1.86554 1.17677 1.35244 1.22185 1.00890 0.84097 0.95757 1.19848 0.78530 0.80599 0.89795 1.90779 1.50789 1.59462 1.37676 1.48478 1.66735 1.06382 1.14099 1.22492 1.01346 0.88607 0.89827 1.22397 0.96314 0.96415 0.96716 0.88954 1.21813 0.94487 1.02662 1.01431 1.22262 0.99695 0.94448 0.94677 0.89514 1.22038 0.97458 0.96704 0.90018 1.60062 1.06050 1.57908 1.06164 1.21656 0.99577 0.94894 0.91958 1.19815 0.88218 0.84966 0.84383 1.90531 1.33541 1.40394 1.82104 1.41869 1.26435 1.39594 1.12246 1.19763 1.06853 1.24404 0.91760 0.87860 1.25258 0.97598 0.96204 0.98915 1.69619 1.29096 1.27850 1.27827 0.85802 0.80052 0.78109 0.80398 1.19210 1.20799 1.20749 1.21907 1.00689 0.89941 0.87109 0.91460 0.92542 0.91494 0.92120 0.91493 0.91128 0.91828 0.90508 0.90583 0.91020 0.90676 0.91554 0.92530 0.92173 0.94937 0.90426 0.83169 0.93906 0.89641 0.77493 0.91963 0.90511 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.53 37.16 0.35 -0.74 16 2 C 0.08 0.58 3.34 -26.73 -0.09 0.49 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 4 O -0.36 -4.02 9.52 -55.14 -0.52 -4.54 16 5 C 0.05 0.45 5.23 36.00 0.19 0.64 16 6 C 0.53 6.79 7.93 -10.99 -0.09 6.70 16 7 O -0.51 -9.39 16.83 -14.35 -0.24 -9.63 16 8 N -0.62 -6.60 3.31 -170.39 -0.56 -7.16 16 9 C 0.10 0.65 6.17 -2.41 -0.01 0.63 16 10 C -0.10 -0.65 3.54 -88.35 -0.31 -0.96 16 11 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 12 C -0.15 -0.99 8.15 37.16 0.30 -0.69 16 13 C -0.09 -0.86 3.00 -88.79 -0.27 -1.13 16 14 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.07 0.75 3.94 -3.82 -0.02 0.73 16 16 N -0.67 -10.42 5.93 -115.05 -0.68 -11.10 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 19 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 20 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 21 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.13 1.55 5.96 -3.07 -0.02 1.53 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.08 0.49 7.58 -51.93 -0.39 0.10 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.34 7.40 -51.93 -0.38 -0.04 16 41 H 0.07 0.46 6.76 -51.93 -0.35 0.10 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.87 6.67 -51.93 -0.35 0.52 16 46 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 52 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 421.57 15.07 6.35 6.35 Total: -1.00 -35.91 421.57 -9.07 -44.99 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -9.18 Total: 9.50 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 0.04 Total: 9.75 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.58 Total: -56.82 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.68 Total: -30.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.91 -9.07 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672260475.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.805 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds