Wall clock time and date at job start Wed Apr 1 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47196 * 2 1 4 4 O 1.42904 * 109.46967 * 119.99919 * 2 1 3 5 5 C 1.42901 * 113.99880 * 89.99917 * 4 2 1 6 6 C 1.50707 * 109.46746 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99813 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83663 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.90947 * 8 6 5 30 30 H 1.09000 * 109.47238 * 60.00190 * 1 2 3 31 31 H 1.08998 * 109.47708 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47085 * 300.00414 * 1 2 3 33 33 H 1.09000 * 109.47085 * 239.99586 * 2 1 3 34 34 H 1.08999 * 109.46758 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46952 * 299.99493 * 3 2 1 36 36 H 1.09000 * 109.47442 * 59.99804 * 3 2 1 37 37 H 1.08996 * 109.47375 * 60.00123 * 5 4 2 38 38 H 1.08993 * 109.47002 * 299.99778 * 5 4 2 39 39 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 40 40 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 41 41 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 42 42 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 43 43 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 44 44 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 45 45 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 46 46 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 52 52 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7013 -2.6832 2.2747 7 8 2.8751 -1.9808 3.2480 8 7 2.9556 -4.0050 2.3435 9 6 2.8045 -5.0164 1.2716 10 6 4.0282 -5.9434 1.4352 11 1 4.8346 -5.6295 0.7724 12 6 3.6385 -7.3946 1.1472 13 6 4.4535 -5.7849 2.9099 14 1 5.4689 -5.3932 2.9714 15 6 4.3570 -7.1268 3.6384 16 7 4.8455 -6.9727 5.0152 17 6 4.7671 -8.2440 5.7471 18 6 5.2749 -8.0469 7.1521 19 8 5.6634 -6.9548 7.5090 20 7 5.2963 -9.0840 8.0126 21 6 5.7588 -8.9049 9.2908 22 1 6.1055 -7.9326 9.6082 23 6 5.7756 -9.9728 10.1796 24 7 5.3486 -11.1546 9.7949 25 14 6.4050 -9.7285 11.9213 26 1 5.2781 -9.3336 12.8040 27 1 6.9997 -10.9965 12.4152 28 1 7.4375 -8.6613 11.9294 29 6 3.4513 -4.7752 3.5099 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.9319 -2.2468 0.1988 38 1 1.2537 -2.5433 0.7126 39 1 2.8186 -4.5376 0.2925 40 1 1.8808 -5.5789 1.4073 41 1 2.8064 -7.6818 1.7899 42 1 3.3409 -7.4904 0.1029 43 1 4.4906 -8.0454 1.3433 44 1 4.9646 -7.8673 3.1181 45 1 3.3184 -7.4567 3.6562 46 1 4.3401 -6.2456 5.4990 47 1 5.3772 -8.9925 5.2415 48 1 3.7311 -8.5812 5.7795 49 1 4.9852 -9.9575 7.7273 50 1 5.3607 -11.9002 10.4153 51 1 2.6286 -5.2995 3.9961 52 1 3.9538 -4.1156 4.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672260476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:59 Heat of formation + Delta-G solvation = -116.964331 kcal Electronic energy + Delta-G solvation = -29546.193186 eV Core-core repulsion = 25352.733063 eV Total energy + Delta-G solvation = -4193.460124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53124 -39.07839 -38.24810 -37.79810 -35.34430 -33.87662 -33.23343 -33.06194 -31.22563 -30.55002 -28.68323 -27.64768 -26.64571 -26.60994 -24.79508 -23.66840 -22.59821 -21.77076 -19.86875 -19.46288 -18.98059 -17.85855 -17.62371 -17.16185 -16.69574 -16.35104 -15.91529 -15.67595 -15.28746 -14.97430 -14.70197 -14.54705 -14.44980 -14.09947 -13.84435 -13.75181 -13.37117 -13.24848 -12.94512 -12.81214 -12.68948 -12.61513 -12.50539 -12.37960 -12.23056 -12.17554 -11.92157 -11.86094 -11.55268 -11.47291 -11.17684 -11.02959 -10.92179 -10.78513 -10.62481 -10.37384 -10.19669 -10.09863 -9.96767 -9.48906 -9.01209 -8.44567 -8.04759 -7.93848 -6.40001 -3.80568 2.32447 2.36894 3.19766 3.28276 3.34729 3.43339 3.92685 3.99235 4.15257 4.18579 4.31721 4.41925 4.46196 4.55292 4.64239 4.68449 4.71730 4.79419 4.89625 5.02907 5.05186 5.11395 5.15735 5.17760 5.24535 5.27211 5.28770 5.34843 5.39910 5.40911 5.45408 5.50218 5.62497 5.74043 5.77954 5.78877 5.79145 5.85586 5.90633 5.99408 6.00101 6.18576 6.28621 6.71059 7.21169 7.25780 7.57335 7.64868 7.93379 8.08557 8.63412 9.20083 9.56332 10.08041 10.77773 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.001714 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.714040 B =16327.882023 C =17424.226603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.051 3.949 6 C 0.533 3.467 7 O -0.514 6.514 8 N -0.625 5.625 9 C 0.102 3.898 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.148 4.148 13 C -0.096 4.096 14 H 0.094 0.906 15 C 0.067 3.933 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.109 3.891 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.031 0.969 46 H 0.349 0.651 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.071 0.929 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 11.865 -27.624 31.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.029 4.029 6 C 0.320 3.680 7 O -0.388 6.388 8 N -0.362 5.362 9 C -0.021 4.021 10 C -0.120 4.120 11 H 0.102 0.898 12 C -0.206 4.206 13 C -0.116 4.116 14 H 0.112 0.888 15 C -0.063 4.063 16 N -0.304 5.304 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.013 4.013 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.049 0.951 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.108 12.979 -26.727 31.076 hybrid contribution -0.976 -0.932 0.530 1.450 sum -10.084 12.047 -26.197 30.547 Atomic orbital electron populations 1.22319 0.95773 1.02410 1.02909 1.22184 0.93829 0.94111 0.87726 1.21857 1.02027 0.94137 1.02709 1.88083 1.86581 1.17602 1.35321 1.22165 1.00957 0.84163 0.95622 1.19833 0.78110 0.80206 0.89807 1.90774 1.50937 1.59302 1.37784 1.48936 1.66563 1.05933 1.14757 1.22576 0.98818 0.89714 0.91004 1.22097 0.97292 0.95797 0.96791 0.89797 1.21931 1.02322 0.94910 1.01424 1.22168 1.00517 0.95420 0.93488 0.88784 1.22159 0.97977 0.96133 0.89986 1.60098 1.61280 1.07386 1.01647 1.21659 0.99519 0.92424 0.94529 1.19827 0.85364 0.85753 0.86518 1.90534 1.52376 1.25401 1.78248 1.41863 1.56504 1.10429 1.11313 1.19718 1.38626 0.97774 0.86746 0.87913 1.25254 0.97562 0.94769 1.00347 1.69614 1.47226 1.00761 1.36794 0.85856 0.79046 0.77682 0.81705 1.20445 1.20935 1.19396 1.22504 0.96772 0.93283 0.88739 0.91446 0.92532 0.91469 0.92076 0.91808 0.91096 0.91489 0.90390 0.90483 0.90483 0.90582 0.91915 0.92567 0.91392 0.90214 0.95059 0.83194 0.89586 0.93929 0.77487 0.91919 0.91093 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.53 37.16 0.35 -0.69 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.15 -0.96 9.56 37.16 0.36 -0.60 16 4 O -0.36 -3.89 9.52 -55.14 -0.52 -4.41 16 5 C 0.05 0.44 5.21 36.01 0.19 0.63 16 6 C 0.53 6.64 7.99 -10.98 -0.09 6.55 16 7 O -0.51 -9.05 16.77 -14.35 -0.24 -9.29 16 8 N -0.63 -6.42 3.32 -169.17 -0.56 -6.98 16 9 C 0.10 0.65 6.47 -2.41 -0.02 0.64 16 10 C -0.10 -0.68 3.66 -89.22 -0.33 -1.01 16 11 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.15 -0.85 7.94 37.16 0.29 -0.55 16 13 C -0.10 -0.95 3.30 -89.21 -0.29 -1.24 16 14 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 15 C 0.07 0.74 3.88 -3.82 -0.01 0.72 16 16 N -0.67 -10.57 6.13 -115.06 -0.71 -11.27 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 18 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 19 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 C 0.11 1.24 5.82 -2.31 -0.01 1.23 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.48 7.90 -51.93 -0.41 0.07 16 38 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 39 H 0.08 0.32 7.30 -51.93 -0.38 -0.06 16 40 H 0.08 0.42 7.83 -51.93 -0.41 0.02 16 41 H 0.06 0.38 6.85 -51.93 -0.36 0.02 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.42 6.71 -51.93 -0.35 0.07 16 44 H 0.08 0.82 6.58 -51.93 -0.34 0.48 16 45 H 0.03 0.31 6.89 -51.93 -0.36 -0.04 16 46 H 0.35 5.82 7.68 -39.29 -0.30 5.52 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 52 H 0.09 1.26 7.89 -51.93 -0.41 0.86 16 LS Contribution 418.30 15.07 6.30 6.30 Total: -1.00 -35.74 418.30 -9.00 -44.75 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -9.00 Total: 9.70 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.01 Total: 9.29 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.60 Total: -56.64 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.68 Total: -29.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.74 -9.00 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672260476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.218 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds