Wall clock time and date at job start Wed Apr 1 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46707 * 2 1 4 4 O 1.42889 * 109.47226 * 120.00239 * 2 1 3 5 5 C 1.42898 * 113.99966 * 150.00529 * 4 2 1 6 6 C 1.50708 * 109.47195 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99780 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.48139 * 127.84158 * 0.02562 * 8 6 5 10 10 C 1.54392 * 104.61588 * 140.42200 * 9 8 6 11 11 H 1.09001 * 110.33707 * 264.99505 * 10 9 8 12 12 C 1.52996 * 110.34301 * 142.73950 * 10 9 8 13 13 C 1.54282 * 104.96229 * 23.86406 * 10 9 8 14 14 H 1.08996 * 110.34067 * 118.97600 * 13 10 9 15 15 C 1.52993 * 110.34520 * 241.13469 * 13 10 9 16 16 N 1.46901 * 109.46977 * 185.00079 * 15 13 10 17 17 C 1.46902 * 110.99844 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99593 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99735 * 25 23 21 29 29 C 1.48147 * 127.83214 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.47065 * 299.99755 * 1 2 3 31 31 H 1.08995 * 109.47174 * 59.99842 * 1 2 3 32 32 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47266 * 240.00750 * 2 1 3 34 34 H 1.09004 * 109.47158 * 60.00302 * 3 2 1 35 35 H 1.09005 * 109.46669 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47432 * 300.00000 * 3 2 1 37 37 H 1.08996 * 109.47759 * 59.99690 * 5 4 2 38 38 H 1.09004 * 109.46748 * 299.99490 * 5 4 2 39 39 H 1.08994 * 110.40906 * 21.63926 * 9 8 6 40 40 H 1.09000 * 110.40843 * 259.20422 * 9 8 6 41 41 H 1.09002 * 109.47400 * 304.45876 * 12 10 9 42 42 H 1.08997 * 109.47299 * 64.46317 * 12 10 9 43 43 H 1.09000 * 109.47263 * 184.46048 * 12 10 9 44 44 H 1.08997 * 109.47854 * 64.99968 * 15 13 10 45 45 H 1.09005 * 109.47140 * 304.99849 * 15 13 10 46 46 H 1.00902 * 111.00235 * 56.04818 * 16 15 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 15 48 48 H 1.09000 * 109.47732 * 300.00127 * 17 16 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.41029 * 100.79662 * 29 8 6 52 52 H 1.09000 * 110.40702 * 338.36434 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3243 0.9885 6 6 3.6694 -1.9988 2.2744 7 8 2.9493 -1.9287 3.2477 8 7 4.8310 -2.6790 2.3430 9 6 5.8349 -2.8735 1.2711 10 6 7.1975 -2.7500 1.9865 11 1 7.5768 -1.7313 1.9056 12 6 8.2011 -3.7412 1.3940 13 6 6.9063 -3.0983 3.4610 14 1 7.4796 -3.9745 3.7637 15 6 7.2380 -1.9087 4.3641 16 7 7.0683 -2.2991 5.7701 17 6 7.3795 -1.1793 6.6686 18 6 7.1940 -1.6163 8.0988 19 8 6.8381 -2.7493 8.3455 20 7 7.4294 -0.7500 9.1041 21 6 7.2662 -1.1492 10.4055 22 1 6.9493 -2.1581 10.6251 23 6 7.5084 -0.2560 11.4418 24 7 7.3523 -0.6389 12.6892 25 14 8.0558 1.4891 11.0620 26 1 6.8630 2.3622 10.9200 27 1 8.9086 1.9923 12.1686 28 1 8.8309 1.5001 9.7954 29 6 5.3933 -3.4018 3.5075 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1985 39 1 5.7335 -2.0996 0.5104 40 1 5.7280 -3.8624 0.8252 41 1 7.7903 -4.7494 1.4465 42 1 8.3964 -3.4822 0.3534 43 1 9.1317 -3.6981 1.9598 44 1 6.5686 -1.0799 4.1339 45 1 8.2697 -1.6004 4.1946 46 1 7.6309 -3.1070 5.9915 47 1 6.7113 -0.3451 6.4543 48 1 8.4122 -0.8662 6.5150 49 1 7.7143 0.1560 8.9069 50 1 7.5211 -0.0152 13.4127 51 1 5.2175 -4.4732 3.4110 52 1 4.9587 -3.0264 4.4339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672260477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:02 Heat of formation + Delta-G solvation = -112.946699 kcal Electronic energy + Delta-G solvation = -29961.956906 eV Core-core repulsion = 25768.671000 eV Total energy + Delta-G solvation = -4193.285906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44183 -38.96990 -38.37872 -37.69615 -35.38054 -33.86949 -33.19286 -32.99627 -31.63158 -30.71653 -28.61836 -27.59087 -26.91167 -26.47684 -24.91947 -23.51788 -21.83161 -21.71955 -20.27256 -19.64770 -19.30366 -18.29138 -17.52476 -17.03121 -16.53721 -16.12521 -15.96669 -15.73703 -15.38819 -14.88076 -14.72699 -14.58666 -14.25098 -14.02996 -13.82634 -13.46551 -13.34363 -13.25285 -13.11356 -12.90151 -12.85194 -12.56521 -12.46897 -12.37546 -12.19824 -12.13343 -11.97133 -11.83898 -11.78254 -11.62521 -11.17015 -11.13124 -11.05809 -10.93322 -10.72470 -10.56236 -10.04155 -9.93729 -9.86358 -9.53199 -8.90673 -8.55090 -8.15433 -8.10029 -6.27155 -3.78330 2.41380 2.46703 3.05148 3.10510 3.17786 3.50311 3.78593 3.95572 4.13768 4.17219 4.25037 4.45600 4.49594 4.59301 4.62934 4.69506 4.76389 4.84139 4.91163 4.94992 4.97775 5.03768 5.15333 5.20963 5.25232 5.26741 5.29640 5.34346 5.40478 5.45830 5.52309 5.56839 5.66347 5.67822 5.76528 5.80039 5.81843 5.83668 5.84486 5.84982 5.98585 6.08204 6.22600 6.77512 7.10400 7.35327 7.60193 7.62702 8.03981 8.18824 8.63996 8.99151 9.46661 9.87182 10.86047 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.002270 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.280844 B =12331.246204 C =14039.271876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.051 3.949 6 C 0.532 3.468 7 O -0.509 6.509 8 N -0.625 5.625 9 C 0.103 3.897 10 C -0.103 4.103 11 H 0.083 0.917 12 C -0.142 4.142 13 C -0.095 4.095 14 H 0.090 0.910 15 C 0.068 3.932 16 N -0.667 5.667 17 C 0.049 3.951 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.114 3.886 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.350 0.650 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.069 0.931 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 0.916 -34.192 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.275 6.275 5 C -0.029 4.029 6 C 0.319 3.681 7 O -0.382 6.382 8 N -0.362 5.362 9 C -0.021 4.021 10 C -0.123 4.123 11 H 0.101 0.899 12 C -0.200 4.200 13 C -0.115 4.115 14 H 0.109 0.891 15 C -0.061 4.061 16 N -0.300 5.300 17 C -0.083 4.083 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.007 4.007 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.170 0.830 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.371 0.428 -33.062 33.236 hybrid contribution 1.737 1.588 -0.498 2.405 sum -1.634 2.016 -33.560 33.660 Atomic orbital electron populations 1.21857 0.93181 1.02959 1.02732 1.22177 0.95450 0.92491 0.87710 1.22322 1.01463 0.96719 1.02928 1.88091 1.34489 1.69660 1.35262 1.22171 0.88170 0.96874 0.95702 1.19804 0.79949 0.78629 0.89740 1.90799 1.50711 1.59129 1.37564 1.48924 1.19658 1.52989 1.14675 1.22533 0.87360 1.01707 0.90477 1.22151 0.94757 1.00803 0.94554 0.89887 1.21824 0.98753 0.98767 1.00663 1.22198 0.96411 0.99199 0.93645 0.89131 1.22011 0.98788 0.97065 0.88282 1.60021 1.62011 1.07165 1.00802 1.21685 0.99369 0.94653 0.92632 1.19704 0.84175 0.86686 0.85775 1.90565 1.50061 1.19728 1.84155 1.42207 1.61916 1.12275 1.06716 1.19434 1.43370 1.01285 0.79144 0.86273 1.25038 0.97815 0.98394 0.94994 1.69625 1.48364 1.35884 0.98340 0.86664 0.79331 0.84951 0.78389 1.19582 1.20222 1.19585 1.22400 0.91940 0.95902 0.90498 0.91436 0.91133 0.91857 0.92159 0.91395 0.92547 0.91496 0.90588 0.90562 0.90633 0.90670 0.92150 0.92410 0.91992 0.91123 0.95300 0.83048 0.89573 0.93843 0.79726 0.91655 0.91260 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.56 37.16 0.36 -0.69 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.18 -1.18 9.53 37.16 0.35 -0.83 16 4 O -0.36 -4.13 9.52 -55.14 -0.52 -4.65 16 5 C 0.05 0.46 5.21 36.01 0.19 0.65 16 6 C 0.53 6.93 7.99 -10.98 -0.09 6.84 16 7 O -0.51 -9.46 16.77 -14.35 -0.24 -9.71 16 8 N -0.63 -6.54 3.32 -169.31 -0.56 -7.10 16 9 C 0.10 0.64 6.46 -2.41 -0.02 0.62 16 10 C -0.10 -0.65 3.31 -89.22 -0.30 -0.95 16 11 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 12 C -0.14 -0.69 8.92 37.16 0.33 -0.36 16 13 C -0.09 -0.87 2.88 -89.23 -0.26 -1.13 16 14 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 15 C 0.07 0.78 4.79 -3.83 -0.02 0.76 16 16 N -0.67 -10.38 5.72 -115.06 -0.66 -11.04 16 17 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 18 C 0.45 10.57 7.82 -10.98 -0.09 10.48 16 19 O -0.56 -15.51 15.78 5.55 0.09 -15.42 16 20 N -0.59 -14.54 5.09 -10.96 -0.06 -14.60 16 21 C -0.30 -8.81 10.16 -14.93 -0.15 -8.97 16 22 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.29 13.96 55.50 0.77 -25.51 16 25 Si 0.88 19.86 27.74 -169.99 -4.71 15.15 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 29 C 0.11 1.32 6.53 -2.41 -0.02 1.31 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 38 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.08 0.32 7.30 -51.93 -0.38 -0.06 16 40 H 0.08 0.38 7.83 -51.93 -0.41 -0.03 16 41 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 42 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 47 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.37 8.01 5.76 -40.82 -0.24 7.77 16 50 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.10 1.63 7.31 -51.93 -0.38 1.26 16 LS Contribution 421.75 15.07 6.36 6.36 Total: -1.00 -37.53 421.75 -8.67 -46.20 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -9.21 Total: 10.23 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 0.09 Total: 10.11 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.50 Total: -58.25 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.68 Total: -29.78 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.15 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -37.53 -8.67 -46.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672260477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.749 kcal (2) G-P(sol) polarization free energy of solvation -37.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds