Wall clock time and date at job start Wed Apr 1 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46707 * 2 1 4 4 O 1.42889 * 109.47226 * 120.00239 * 2 1 3 5 5 C 1.42898 * 113.99966 * 150.00529 * 4 2 1 6 6 C 1.50708 * 109.47195 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99780 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.48139 * 127.84158 * 0.02562 * 8 6 5 10 10 C 1.54392 * 104.61588 * 140.42200 * 9 8 6 11 11 H 1.09001 * 110.33707 * 264.99505 * 10 9 8 12 12 C 1.52996 * 110.34301 * 142.73950 * 10 9 8 13 13 C 1.54282 * 104.96229 * 23.86406 * 10 9 8 14 14 H 1.08996 * 110.34067 * 118.97600 * 13 10 9 15 15 C 1.52993 * 110.34520 * 241.13469 * 13 10 9 16 16 N 1.46901 * 109.46977 * 185.00079 * 15 13 10 17 17 C 1.46902 * 110.99844 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99593 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99735 * 25 23 21 29 29 C 1.48147 * 127.83214 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.47065 * 299.99755 * 1 2 3 31 31 H 1.08995 * 109.47174 * 59.99842 * 1 2 3 32 32 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47266 * 240.00750 * 2 1 3 34 34 H 1.09004 * 109.47158 * 60.00302 * 3 2 1 35 35 H 1.09005 * 109.46669 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47432 * 300.00000 * 3 2 1 37 37 H 1.08996 * 109.47759 * 59.99690 * 5 4 2 38 38 H 1.09004 * 109.46748 * 299.99490 * 5 4 2 39 39 H 1.08994 * 110.40906 * 21.63926 * 9 8 6 40 40 H 1.09000 * 110.40843 * 259.20422 * 9 8 6 41 41 H 1.09002 * 109.47400 * 304.45876 * 12 10 9 42 42 H 1.08997 * 109.47299 * 64.46317 * 12 10 9 43 43 H 1.09000 * 109.47263 * 184.46048 * 12 10 9 44 44 H 1.08997 * 109.47854 * 64.99968 * 15 13 10 45 45 H 1.09005 * 109.47140 * 304.99849 * 15 13 10 46 46 H 1.00902 * 111.00235 * 56.04818 * 16 15 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 15 48 48 H 1.09000 * 109.47732 * 300.00127 * 17 16 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.41029 * 100.79662 * 29 8 6 52 52 H 1.09000 * 110.40702 * 338.36434 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3243 0.9885 6 6 3.6694 -1.9988 2.2744 7 8 2.9493 -1.9287 3.2477 8 7 4.8310 -2.6790 2.3430 9 6 5.8349 -2.8735 1.2711 10 6 7.1975 -2.7500 1.9865 11 1 7.5768 -1.7313 1.9056 12 6 8.2011 -3.7412 1.3940 13 6 6.9063 -3.0983 3.4610 14 1 7.4796 -3.9745 3.7637 15 6 7.2380 -1.9087 4.3641 16 7 7.0683 -2.2991 5.7701 17 6 7.3795 -1.1793 6.6686 18 6 7.1940 -1.6163 8.0988 19 8 6.8381 -2.7493 8.3455 20 7 7.4294 -0.7500 9.1041 21 6 7.2662 -1.1492 10.4055 22 1 6.9493 -2.1581 10.6251 23 6 7.5084 -0.2560 11.4418 24 7 7.3523 -0.6389 12.6892 25 14 8.0558 1.4891 11.0620 26 1 6.8630 2.3622 10.9200 27 1 8.9086 1.9923 12.1686 28 1 8.8309 1.5001 9.7954 29 6 5.3933 -3.4018 3.5075 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1985 39 1 5.7335 -2.0996 0.5104 40 1 5.7280 -3.8624 0.8252 41 1 7.7903 -4.7494 1.4465 42 1 8.3964 -3.4822 0.3534 43 1 9.1317 -3.6981 1.9598 44 1 6.5686 -1.0799 4.1339 45 1 8.2697 -1.6004 4.1946 46 1 7.6309 -3.1070 5.9915 47 1 6.7113 -0.3451 6.4543 48 1 8.4122 -0.8662 6.5150 49 1 7.7143 0.1560 8.9069 50 1 7.5211 -0.0152 13.4127 51 1 5.2175 -4.4732 3.4110 52 1 4.9587 -3.0264 4.4339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672260477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:02 Heat of formation + Delta-G solvation = -142.385427 kcal Electronic energy + Delta-G solvation = -29963.233465 eV Core-core repulsion = 25768.671000 eV Total energy + Delta-G solvation = -4194.562465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27507 -40.33543 -39.60667 -38.60172 -36.66366 -35.86980 -33.95980 -33.76514 -33.61938 -31.59395 -29.58224 -28.26326 -27.97914 -27.14152 -26.27865 -24.94079 -22.67010 -22.26849 -21.40347 -20.88879 -20.48588 -20.20625 -18.29812 -17.86635 -17.73537 -17.29039 -17.08317 -16.77642 -16.62679 -16.22275 -15.78687 -15.46728 -15.32255 -15.14503 -15.08652 -14.76910 -14.43439 -14.29878 -14.07535 -13.91234 -13.68789 -13.59077 -13.45867 -13.30060 -13.08752 -12.97892 -12.94118 -12.82558 -12.68012 -12.55127 -12.43652 -12.36110 -11.99888 -11.76675 -11.65315 -11.54638 -11.51608 -11.47424 -10.86046 -10.65499 -10.47185 -10.27651 -9.77210 -9.31780 -8.43706 -6.04831 1.27242 1.33860 1.42183 1.53919 1.66229 1.92005 2.20815 2.68963 2.88639 3.12126 3.32463 3.49962 3.63153 3.78136 3.89112 4.01147 4.07391 4.11551 4.12881 4.24626 4.26505 4.29743 4.35477 4.38126 4.47539 4.52905 4.59129 4.66677 4.72952 4.74545 4.78947 4.81020 4.90574 4.92498 4.93371 5.00727 5.03635 5.21743 5.26575 5.29069 5.32711 5.37939 5.50011 5.58138 5.87643 6.02181 6.19024 6.41115 6.54935 6.57064 6.84975 7.13014 7.36362 7.92911 8.74022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.002270 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.280844 B =12331.246204 C =14039.271876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.399 6.399 5 C 0.056 3.944 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.621 5.621 9 C 0.099 3.901 10 C -0.092 4.092 11 H 0.093 0.907 12 C -0.138 4.138 13 C -0.089 4.089 14 H 0.097 0.903 15 C 0.073 3.927 16 N -0.691 5.691 17 C 0.065 3.935 18 C 0.447 3.553 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.260 1.260 27 H -0.272 1.272 28 H -0.230 1.230 29 C 0.110 3.890 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.347 0.653 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.389 0.611 50 H 0.280 0.720 51 H 0.074 0.926 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 3.353 -39.145 39.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.318 6.318 5 C -0.023 4.023 6 C 0.309 3.691 7 O -0.464 6.464 8 N -0.356 5.356 9 C -0.022 4.022 10 C -0.112 4.112 11 H 0.111 0.889 12 C -0.196 4.196 13 C -0.108 4.108 14 H 0.115 0.885 15 C -0.055 4.055 16 N -0.324 5.324 17 C -0.068 4.068 18 C 0.235 3.765 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.574 5.574 25 Si 0.786 3.214 26 H -0.185 1.185 27 H -0.196 1.196 28 H -0.153 1.153 29 C -0.013 4.013 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.166 0.834 47 H 0.120 0.880 48 H 0.099 0.901 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.914 2.855 -38.093 38.211 hybrid contribution 0.934 0.659 1.053 1.554 sum 0.021 3.514 -37.041 37.207 Atomic orbital electron populations 1.21907 0.93362 1.02617 1.02993 1.22428 0.95473 0.92962 0.87546 1.22315 1.01844 0.96149 1.02895 1.88061 1.35690 1.70411 1.37685 1.22294 0.88169 0.98036 0.93767 1.20724 0.79738 0.78218 0.90384 1.90757 1.53193 1.62097 1.40331 1.49029 1.19599 1.51488 1.15487 1.22888 0.85611 1.03978 0.89758 1.22131 0.95308 1.01861 0.91908 0.88892 1.21800 0.97956 0.98228 1.01596 1.22181 0.94316 0.98678 0.95636 0.88485 1.22056 0.99904 0.97605 0.85974 1.59995 1.62755 1.06805 1.02816 1.21572 1.01921 0.95279 0.88001 1.21002 0.81614 0.85710 0.88164 1.90540 1.51615 1.22128 1.85511 1.42036 1.62556 1.13429 1.05258 1.19010 1.45492 0.99388 0.82029 0.92754 1.26146 0.96900 1.04400 0.94062 1.69807 1.49219 1.38434 0.99942 0.85345 0.79508 0.76480 0.80060 1.18473 1.19638 1.15342 1.22318 0.93660 0.96088 0.89243 0.93441 0.88578 0.92506 0.89289 0.93587 0.91898 0.89341 0.87647 0.87179 0.87467 0.88818 0.92139 0.90499 0.92204 0.92216 0.92694 0.83364 0.88037 0.90070 0.77497 0.91085 0.90786 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.56 71.98 0.69 -1.30 16 2 C 0.07 0.97 3.34 30.60 0.10 1.08 16 3 C -0.17 -1.99 9.53 71.98 0.69 -1.30 16 4 O -0.40 -9.01 9.52 -129.94 -1.24 -10.25 16 5 C 0.06 0.91 5.21 71.24 0.37 1.28 16 6 C 0.52 13.56 7.99 87.66 0.70 14.26 16 7 O -0.58 -23.29 16.77 16.01 0.27 -23.03 16 8 N -0.62 -12.32 3.32 -807.97 -2.68 -15.00 16 9 C 0.10 0.85 6.46 86.54 0.56 1.41 16 10 C -0.09 -0.83 3.31 -9.89 -0.03 -0.86 16 11 H 0.09 0.72 7.71 -2.39 -0.02 0.70 16 12 C -0.14 -0.77 8.92 71.98 0.64 -0.13 16 13 C -0.09 -1.49 2.88 -9.89 -0.03 -1.51 16 14 H 0.10 1.53 7.71 -2.39 -0.02 1.51 16 15 C 0.07 1.54 4.79 86.30 0.41 1.95 16 16 N -0.69 -21.26 5.72 -517.93 -2.96 -24.22 16 17 C 0.06 2.12 6.17 85.56 0.53 2.65 16 18 C 0.45 21.35 7.82 87.66 0.69 22.03 16 19 O -0.61 -35.69 15.78 -3.07 -0.05 -35.73 16 20 N -0.59 -29.27 5.09 -306.98 -1.56 -30.83 16 21 C -0.33 -20.09 10.16 84.04 0.85 -19.23 16 22 H 0.05 3.93 7.39 -2.91 -0.02 3.90 16 23 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16 24 N -0.93 -57.78 13.96 21.66 0.30 -57.48 16 25 Si 0.97 40.14 27.74 68.60 1.90 42.04 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 29 C 0.11 2.58 6.53 86.53 0.56 3.15 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.66 7.79 -2.39 -0.02 0.64 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.62 7.87 -2.38 -0.02 0.60 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 1.04 7.68 -2.39 -0.02 1.02 16 38 H 0.11 0.99 8.09 -2.38 -0.02 0.97 16 39 H 0.11 0.31 7.30 -2.39 -0.02 0.29 16 40 H 0.09 0.53 7.83 -2.39 -0.02 0.52 16 41 H 0.06 0.36 8.10 -2.39 -0.02 0.34 16 42 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 45 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.35 10.90 8.43 -89.69 -0.76 10.15 16 47 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 48 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.39 16.01 5.76 -92.71 -0.53 15.48 16 50 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 51 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.05 1.83 7.31 -2.39 -0.02 1.81 16 Total: -1.00 -93.65 421.75 0.74 -92.91 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.44 Total: 38.60 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 7.20 Total: 22.99 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -6.90 Total: -127.53 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -1.02 Total: -69.01 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.90 Total: 42.04 kcal Total: -93.65 0.74 -92.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672260477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.480 kcal (2) G-P(sol) polarization free energy of solvation -93.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds