Wall clock time and date at job start Wed Apr 1 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.47022 * 125.64859 * 179.72273 * 13 11 10 15 15 C 1.54324 * 107.26673 * 178.84837 * 14 13 11 16 16 H 1.09009 * 110.67394 * 96.51767 * 15 14 13 17 17 C 1.52998 * 110.85075 * 219.66865 * 15 14 13 18 18 C 1.55161 * 103.02093 * 338.13524 * 15 14 13 19 19 H 1.09003 * 111.03402 * 153.39688 * 18 15 14 20 20 N 1.46500 * 111.00316 * 277.23456 * 18 15 14 21 21 C 1.36942 * 119.99857 * 198.64736 * 20 18 15 22 22 H 1.07999 * 119.99525 * 0.02562 * 21 20 18 23 23 C 1.38803 * 119.99855 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00191 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99941 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46989 * 60.00809 * 25 23 21 27 27 H 1.48507 * 109.47218 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47209 * 300.00120 * 25 23 21 29 29 C 1.47425 * 125.64926 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 34 34 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 36 36 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 37 37 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 38 38 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 39 39 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 40 40 H 1.08998 * 109.47224 * 300.00395 * 9 7 6 41 41 H 1.09002 * 109.47152 * 59.99840 * 9 7 6 42 42 H 1.09001 * 109.47375 * 299.99958 * 10 9 7 43 43 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 44 44 H 1.09005 * 109.87549 * 298.39297 * 14 13 11 45 45 H 1.08992 * 109.88445 * 59.55052 * 14 13 11 46 46 H 1.09004 * 109.47653 * 173.69171 * 17 15 14 47 47 H 1.08998 * 109.47232 * 293.68681 * 17 15 14 48 48 H 1.08994 * 109.47361 * 53.69040 * 17 15 14 49 49 H 0.96996 * 120.00212 * 18.64590 * 20 18 15 50 50 H 0.97005 * 119.99857 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.36617 * 322.92822 * 29 13 11 52 52 H 1.09000 * 110.36618 * 85.25303 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0013 7 6 6.3822 3.5769 0.0013 8 8 5.8607 4.6718 0.0008 9 6 7.8845 3.4579 0.0019 10 6 8.5068 4.8556 0.0011 11 6 10.0091 4.7366 0.0011 12 8 10.5307 3.6416 0.0011 13 7 10.7731 5.8469 0.0009 14 6 12.2430 5.8756 0.0067 15 6 12.6724 7.3576 -0.0254 16 1 12.8862 7.7182 0.9808 17 6 13.8849 7.5537 -0.9376 18 6 11.4245 8.0705 -0.6103 19 1 11.3740 9.1071 -0.2770 20 7 11.4118 7.9909 -2.0731 21 6 10.6362 8.8551 -2.7991 22 1 10.0342 9.5954 -2.2932 23 6 10.6245 8.7801 -4.1850 24 7 11.3586 7.8781 -4.8015 25 14 9.5660 9.9583 -5.1753 26 1 9.9853 11.3551 -4.8953 27 1 9.7295 9.6729 -6.6235 28 1 8.1414 9.7833 -4.7946 29 6 10.2732 7.2338 0.0014 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6438 0.8909 37 1 3.8366 3.1234 -0.8887 38 1 3.8358 3.1230 0.8912 39 1 6.0354 1.5908 0.0013 40 1 8.2058 2.9172 0.8921 41 1 8.2064 2.9167 -0.8878 42 1 8.1855 5.3959 -0.8894 43 1 8.1849 5.3971 0.8906 44 1 12.6195 5.3980 0.9113 45 1 12.6273 5.3611 -0.8740 46 1 14.0999 8.6181 -1.0327 47 1 14.7485 7.0457 -0.5083 48 1 13.6705 7.1370 -1.9217 49 1 11.9527 7.3263 -2.5274 50 1 11.3501 7.8254 -5.7701 51 1 9.3773 7.3143 -0.6142 52 1 10.0654 7.5618 1.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673917579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:25 Heat of formation + Delta-G solvation = -117.551759 kcal Electronic energy + Delta-G solvation = -29595.991967 eV Core-core repulsion = 25402.506370 eV Total energy + Delta-G solvation = -4193.485596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09975 -39.49763 -38.42449 -37.57147 -35.69155 -33.84218 -32.98567 -32.39585 -31.89184 -30.46035 -27.85093 -27.67244 -26.80006 -25.48468 -24.07864 -23.76323 -22.14289 -21.81903 -20.39916 -19.22462 -18.75181 -17.65143 -17.25171 -16.99120 -16.80834 -16.22752 -16.15121 -15.72336 -15.68231 -15.20943 -15.10415 -14.68290 -14.43326 -14.15869 -13.76938 -13.47079 -13.20891 -13.00516 -12.90338 -12.68436 -12.41017 -12.34491 -12.25095 -12.08411 -12.02245 -11.72842 -11.57088 -11.53906 -11.51224 -11.11859 -11.06784 -10.89666 -10.71305 -10.44872 -10.28963 -10.15244 -9.94776 -9.92803 -9.64635 -9.49981 -9.30220 -9.00951 -8.18318 -7.01543 -5.81453 -3.11209 2.56657 2.77326 3.01122 3.34499 3.42121 3.47238 3.47583 3.55026 4.45574 4.48299 4.54760 4.62815 4.68186 4.87308 4.87541 4.90676 4.99577 5.03935 5.05988 5.14213 5.19547 5.21547 5.25885 5.31806 5.34639 5.56989 5.62832 5.63620 5.65670 5.69280 5.79874 5.90712 5.94725 5.99871 6.05007 6.20364 6.22237 6.23860 6.37417 6.38879 6.53872 6.64958 6.65788 6.80109 6.93234 7.28164 7.65601 7.96570 8.09613 8.36449 8.53318 9.48324 10.03726 10.38339 11.40477 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.002096 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.742909 B =13353.854853 C =15289.912438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.122 3.878 6 N -0.735 5.735 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.122 4.122 10 C -0.119 4.119 11 C 0.529 3.471 12 O -0.562 6.562 13 N -0.601 5.601 14 C 0.117 3.883 15 C -0.114 4.114 16 H 0.079 0.921 17 C -0.132 4.132 18 C 0.171 3.829 19 H 0.071 0.929 20 N -0.709 5.709 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.285 1.285 29 C 0.067 3.933 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.068 0.932 49 H 0.387 0.613 50 H 0.256 0.744 51 H 0.082 0.918 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 -12.282 13.444 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.388 5.388 7 C 0.302 3.698 8 O -0.413 6.413 9 C -0.163 4.163 10 C -0.160 4.160 11 C 0.318 3.682 12 O -0.442 6.442 13 N -0.333 5.333 14 C -0.006 4.006 15 C -0.133 4.133 16 H 0.097 0.903 17 C -0.189 4.189 18 C 0.059 3.941 19 H 0.088 0.912 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.212 1.212 29 C -0.059 4.059 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.223 0.777 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.013 -12.142 13.326 22.234 hybrid contribution -0.608 0.217 -0.800 1.028 sum -13.621 -11.925 12.525 22.014 Atomic orbital electron populations 1.22758 0.80677 1.02897 1.00162 1.87855 1.19997 1.27882 1.95487 1.22385 0.93268 0.84857 1.00826 1.21681 0.93946 0.97034 1.04259 1.21150 0.80034 0.96261 1.02783 1.45953 1.06547 1.09456 1.76852 1.20821 0.89835 0.83933 0.75215 1.90727 1.75264 1.26524 1.48744 1.21358 0.90008 0.99079 1.05806 1.21303 0.91261 0.97467 1.05935 1.20169 0.89029 0.82976 0.75977 1.90646 1.75346 1.26176 1.52009 1.48314 1.06918 1.06531 1.71532 1.21931 0.80348 0.97096 1.01184 1.22495 0.96969 0.94167 0.99714 0.90279 1.21599 0.95321 1.02097 0.99922 1.21363 0.90199 0.96167 0.86410 0.91160 1.42375 1.53579 1.40639 0.98425 1.19177 1.19374 1.10424 0.88731 0.91040 1.24745 1.00128 0.99073 0.96570 1.69654 1.43278 1.36383 1.08337 0.86284 0.80185 0.80502 0.79287 1.21211 1.21751 1.21189 1.23443 1.01500 0.81306 0.99671 0.93947 0.93904 0.89508 0.92857 0.92771 0.90200 0.90291 0.91185 0.91284 0.76276 0.88207 0.87940 0.87768 0.88580 0.92437 0.91524 0.92125 0.93715 0.91269 0.77738 0.93379 0.89927 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.26 10.70 -35.23 -0.38 -3.63 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -0.85 5.70 -26.73 -0.15 -1.00 16 5 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 6 N -0.73 -6.68 5.56 -60.30 -0.33 -7.01 16 7 C 0.51 6.45 7.83 -10.98 -0.09 6.37 16 8 O -0.54 -8.78 15.98 5.56 0.09 -8.69 16 9 C -0.12 -1.50 4.99 -27.88 -0.14 -1.64 16 10 C -0.12 -1.77 3.99 -27.88 -0.11 -1.88 16 11 C 0.53 9.29 7.85 -10.98 -0.09 9.21 16 12 O -0.56 -11.08 16.31 5.56 0.09 -10.99 16 13 N -0.60 -10.46 3.33 -170.52 -0.57 -11.03 16 14 C 0.12 1.94 6.47 -3.06 -0.02 1.92 16 15 C -0.11 -1.75 3.41 -88.78 -0.30 -2.06 16 16 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 17 C -0.13 -2.07 8.72 37.16 0.32 -1.75 16 18 C 0.17 3.13 3.44 -65.78 -0.23 2.90 16 19 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 20 N -0.71 -16.61 4.74 -51.35 -0.24 -16.86 16 21 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 25 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.07 1.13 6.38 -2.53 -0.02 1.11 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.40 2.60 8.47 -40.82 -0.35 2.26 16 40 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.10 1.71 7.81 -51.93 -0.41 1.31 16 43 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.29 6.36 -51.93 -0.33 0.96 16 49 H 0.39 9.86 6.08 -40.82 -0.25 9.61 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 52 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 423.96 15.07 6.39 6.39 Total: -1.00 -34.03 423.96 -8.28 -42.30 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -9.27 Total: 10.12 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.25 Total: 9.13 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.42 Total: -61.61 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.20 Total: -23.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.03 -8.28 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673917579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.251 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds