Wall clock time and date at job start Wed Apr 1 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.47022 * 125.64859 * 179.72273 * 13 11 10 15 15 C 1.54324 * 107.26673 * 178.84837 * 14 13 11 16 16 H 1.09009 * 110.67394 * 96.51767 * 15 14 13 17 17 C 1.52998 * 110.85075 * 219.66865 * 15 14 13 18 18 C 1.55161 * 103.02093 * 338.13524 * 15 14 13 19 19 H 1.09003 * 111.03402 * 153.39688 * 18 15 14 20 20 N 1.46500 * 111.00316 * 277.23456 * 18 15 14 21 21 C 1.36942 * 119.99857 * 198.64736 * 20 18 15 22 22 H 1.07999 * 119.99525 * 0.02562 * 21 20 18 23 23 C 1.38803 * 119.99855 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00191 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99941 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46989 * 60.00809 * 25 23 21 27 27 H 1.48507 * 109.47218 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47209 * 300.00120 * 25 23 21 29 29 C 1.47425 * 125.64926 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 34 34 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 36 36 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 37 37 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 38 38 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 39 39 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 40 40 H 1.08998 * 109.47224 * 300.00395 * 9 7 6 41 41 H 1.09002 * 109.47152 * 59.99840 * 9 7 6 42 42 H 1.09001 * 109.47375 * 299.99958 * 10 9 7 43 43 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 44 44 H 1.09005 * 109.87549 * 298.39297 * 14 13 11 45 45 H 1.08992 * 109.88445 * 59.55052 * 14 13 11 46 46 H 1.09004 * 109.47653 * 173.69171 * 17 15 14 47 47 H 1.08998 * 109.47232 * 293.68681 * 17 15 14 48 48 H 1.08994 * 109.47361 * 53.69040 * 17 15 14 49 49 H 0.96996 * 120.00212 * 18.64590 * 20 18 15 50 50 H 0.97005 * 119.99857 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.36617 * 322.92822 * 29 13 11 52 52 H 1.09000 * 110.36618 * 85.25303 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0013 7 6 6.3822 3.5769 0.0013 8 8 5.8607 4.6718 0.0008 9 6 7.8845 3.4579 0.0019 10 6 8.5068 4.8556 0.0011 11 6 10.0091 4.7366 0.0011 12 8 10.5307 3.6416 0.0011 13 7 10.7731 5.8469 0.0009 14 6 12.2430 5.8756 0.0067 15 6 12.6724 7.3576 -0.0254 16 1 12.8862 7.7182 0.9808 17 6 13.8849 7.5537 -0.9376 18 6 11.4245 8.0705 -0.6103 19 1 11.3740 9.1071 -0.2770 20 7 11.4118 7.9909 -2.0731 21 6 10.6362 8.8551 -2.7991 22 1 10.0342 9.5954 -2.2932 23 6 10.6245 8.7801 -4.1850 24 7 11.3586 7.8781 -4.8015 25 14 9.5660 9.9583 -5.1753 26 1 9.9853 11.3551 -4.8953 27 1 9.7295 9.6729 -6.6235 28 1 8.1414 9.7833 -4.7946 29 6 10.2732 7.2338 0.0014 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6438 0.8909 37 1 3.8366 3.1234 -0.8887 38 1 3.8358 3.1230 0.8912 39 1 6.0354 1.5908 0.0013 40 1 8.2058 2.9172 0.8921 41 1 8.2064 2.9167 -0.8878 42 1 8.1855 5.3959 -0.8894 43 1 8.1849 5.3971 0.8906 44 1 12.6195 5.3980 0.9113 45 1 12.6273 5.3611 -0.8740 46 1 14.0999 8.6181 -1.0327 47 1 14.7485 7.0457 -0.5083 48 1 13.6705 7.1370 -1.9217 49 1 11.9527 7.3263 -2.5274 50 1 11.3501 7.8254 -5.7701 51 1 9.3773 7.3143 -0.6142 52 1 10.0654 7.5618 1.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673917579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:24 Heat of formation + Delta-G solvation = -142.016084 kcal Electronic energy + Delta-G solvation = -29597.052819 eV Core-core repulsion = 25402.506370 eV Total energy + Delta-G solvation = -4194.546449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31290 -40.65923 -39.05837 -38.91599 -36.50088 -35.64196 -34.21607 -33.68728 -32.77610 -32.18974 -29.33375 -28.59885 -27.71364 -26.34749 -25.79035 -24.93327 -23.27480 -22.71908 -21.36410 -20.63646 -20.11187 -19.33638 -18.52693 -17.68184 -17.52098 -17.41471 -17.29360 -16.91136 -16.53213 -16.40498 -16.06576 -15.83506 -15.73576 -15.47653 -15.17553 -14.70617 -14.49884 -14.41657 -14.13747 -13.73919 -13.49701 -13.44333 -13.30374 -13.06646 -13.00573 -12.92243 -12.85581 -12.76429 -12.73489 -12.27301 -12.20641 -12.18667 -12.08868 -12.06977 -11.93996 -11.46940 -11.33849 -11.02609 -10.99825 -10.84651 -10.65406 -10.15320 -9.63269 -8.93459 -7.91636 -5.19020 1.48376 1.50496 1.55726 1.57255 1.61415 1.88936 2.25831 2.57574 2.87938 3.39033 3.43651 3.66272 3.88416 3.89745 3.92070 3.95665 4.01028 4.07686 4.13205 4.13891 4.18999 4.41849 4.45429 4.48489 4.49757 4.55055 4.57608 4.67166 4.67867 4.68872 4.77951 4.83520 4.85264 4.87117 4.93106 4.99797 5.03373 5.06852 5.08460 5.23109 5.27532 5.39769 5.43403 5.54336 5.60948 6.18059 6.29918 6.47239 6.58902 7.14025 7.19261 7.37258 8.13595 8.35244 9.31429 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.002096 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.742909 B =13353.854853 C =15289.912438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.061 3.939 4 C -0.120 4.120 5 C 0.123 3.877 6 N -0.719 5.719 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.115 4.115 10 C -0.112 4.112 11 C 0.523 3.477 12 O -0.586 6.586 13 N -0.607 5.607 14 C 0.115 3.885 15 C -0.098 4.098 16 H 0.119 0.881 17 C -0.126 4.126 18 C 0.157 3.843 19 H 0.084 0.916 20 N -0.721 5.721 21 C -0.233 4.233 22 H 0.082 0.918 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.302 1.302 28 H -0.282 1.282 29 C 0.076 3.924 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.374 0.626 50 H 0.248 0.752 51 H 0.060 0.940 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -12.260 15.759 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.016 4.016 4 C -0.158 4.158 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.304 3.696 8 O -0.459 6.459 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.314 3.686 12 O -0.468 6.468 13 N -0.338 5.338 14 C -0.007 4.007 15 C -0.118 4.118 16 H 0.137 0.863 17 C -0.184 4.184 18 C 0.047 3.953 19 H 0.102 0.898 20 N -0.361 5.361 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.268 4.268 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.201 1.201 27 H -0.229 1.229 28 H -0.209 1.209 29 C -0.049 4.049 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.207 0.793 50 H 0.056 0.944 51 H 0.079 0.921 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.718 -12.133 15.701 24.123 hybrid contribution -0.395 0.174 -1.420 1.485 sum -14.113 -11.958 14.281 23.369 Atomic orbital electron populations 1.22926 0.79424 1.03852 1.00884 1.87811 1.21504 1.28622 1.95646 1.22441 0.93228 0.84591 1.01383 1.21558 0.93861 0.95687 1.04653 1.21177 0.79334 0.97362 1.02220 1.45847 1.06932 1.09376 1.75047 1.20814 0.89984 0.83982 0.74794 1.90711 1.75889 1.28193 1.51134 1.21303 0.89800 0.97715 1.06719 1.21238 0.89449 0.99023 1.05466 1.20626 0.90023 0.82633 0.75365 1.90625 1.76000 1.26995 1.53192 1.48463 1.07389 1.06777 1.71196 1.21993 0.79989 0.97836 1.00892 1.22489 0.95211 0.92827 1.01247 0.86274 1.21527 0.96674 1.01903 0.98308 1.21694 0.92402 0.97516 0.83677 0.89844 1.42539 1.53008 1.39819 1.00710 1.19605 1.18054 1.09823 0.89029 0.90018 1.25478 1.02196 1.01144 0.97936 1.69819 1.45720 1.38708 1.07760 0.85316 0.78737 0.79104 0.77232 1.20140 1.22891 1.20857 1.23327 0.99669 0.80723 1.01216 0.93072 0.93336 0.88539 0.92070 0.92520 0.90087 0.89561 0.92224 0.91444 0.74531 0.86306 0.87961 0.89809 0.87317 0.90415 0.94229 0.92379 0.90957 0.94982 0.79312 0.94368 0.92104 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.41 10.70 -148.98 -1.59 -8.01 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 C -0.12 -1.38 5.70 30.59 0.17 -1.21 16 5 C 0.12 1.91 5.67 86.38 0.49 2.40 16 6 N -0.72 -12.14 5.56 -463.07 -2.57 -14.72 16 7 C 0.52 12.55 7.83 87.66 0.69 13.24 16 8 O -0.58 -18.90 15.98 -3.01 -0.05 -18.95 16 9 C -0.12 -2.72 4.99 29.85 0.15 -2.57 16 10 C -0.11 -3.25 3.99 29.85 0.12 -3.13 16 11 C 0.52 18.03 7.85 87.66 0.69 18.72 16 12 O -0.59 -22.80 16.31 -3.02 -0.05 -22.85 16 13 N -0.61 -20.40 3.33 -811.79 -2.70 -23.10 16 14 C 0.12 3.65 6.47 86.73 0.56 4.22 16 15 C -0.10 -2.79 3.41 -9.60 -0.03 -2.83 16 16 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 17 C -0.13 -3.83 8.72 71.98 0.63 -3.20 16 18 C 0.16 5.48 3.44 46.38 0.16 5.64 16 19 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 20 N -0.72 -33.92 4.74 -316.37 -1.50 -35.42 16 21 C -0.23 -12.29 9.98 84.03 0.84 -11.45 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 25 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 28 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 29 C 0.08 2.42 6.38 86.85 0.55 2.97 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.42 4.61 8.47 -92.70 -0.79 3.83 16 40 H 0.12 2.35 8.10 -2.39 -0.02 2.33 16 41 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 42 H 0.08 2.81 7.81 -2.39 -0.02 2.79 16 43 H 0.11 2.86 8.10 -2.39 -0.02 2.84 16 44 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.04 1.46 7.77 -2.39 -0.02 1.44 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.03 1.21 6.36 -2.39 -0.02 1.19 16 49 H 0.37 19.59 6.08 -92.71 -0.56 19.03 16 50 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 51 H 0.06 2.22 7.48 -2.38 -0.02 2.21 16 52 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -74.95 423.96 0.56 -74.39 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.44 Total: 37.82 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 7.16 Total: 21.68 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -6.49 Total: -132.04 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.69 Total: -49.80 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.95 0.56 -74.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673917579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.626 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds