Wall clock time and date at job start Wed Apr 1 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99941 * 2 1 4 4 C 1.53003 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47038 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.46808 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99615 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99886 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47079 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46964 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99771 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.64714 * 179.97438 * 13 11 10 15 15 C 1.54904 * 104.83039 * 155.91404 * 14 13 11 16 16 H 1.08999 * 111.04199 * 278.92569 * 15 14 13 17 17 C 1.52997 * 111.00304 * 155.08596 * 15 14 13 18 18 C 1.55164 * 101.58091 * 37.01483 * 15 14 13 19 19 H 1.09002 * 110.71528 * 205.95489 * 18 15 14 20 20 N 1.46496 * 110.71857 * 82.85933 * 18 15 14 21 21 C 1.36945 * 119.99718 * 157.44207 * 20 18 15 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 C 1.47486 * 125.59481 * 0.02804 * 13 11 10 30 30 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47333 * 300.00050 * 1 2 3 32 32 H 1.08997 * 109.47185 * 60.00170 * 1 2 3 33 33 H 1.09000 * 109.47543 * 59.99896 * 3 2 1 34 34 H 1.09004 * 109.46600 * 299.99676 * 3 2 1 35 35 H 1.08991 * 109.47484 * 59.99365 * 4 3 2 36 36 H 1.09008 * 109.46524 * 299.99422 * 4 3 2 37 37 H 1.09002 * 109.46826 * 59.99703 * 5 4 3 38 38 H 1.08997 * 109.47157 * 299.99804 * 5 4 3 39 39 H 0.96994 * 120.00185 * 0.02562 * 6 5 4 40 40 H 1.09000 * 109.46725 * 60.00266 * 9 7 6 41 41 H 1.08997 * 109.47429 * 300.00448 * 9 7 6 42 42 H 1.08994 * 109.46780 * 59.99960 * 10 9 7 43 43 H 1.09004 * 109.46829 * 300.00163 * 10 9 7 44 44 H 1.08998 * 110.36254 * 37.08154 * 14 13 11 45 45 H 1.08996 * 110.36715 * 274.75584 * 14 13 11 46 46 H 1.09002 * 109.47380 * 307.80182 * 17 15 14 47 47 H 1.09002 * 109.47485 * 67.80566 * 17 15 14 48 48 H 1.09008 * 109.47341 * 187.80689 * 17 15 14 49 49 H 0.96996 * 120.00499 * 337.43937 * 20 18 15 50 50 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.03701 * 61.63491 * 29 13 11 52 52 H 1.09006 * 109.96013 * 300.32493 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6182 2.4666 -0.0013 7 6 6.3821 3.5770 -0.0023 8 8 5.8605 4.6720 -0.0028 9 6 7.8844 3.4580 -0.0029 10 6 8.5067 4.8558 -0.0034 11 6 10.0090 4.7368 -0.0047 12 8 10.5305 3.6419 -0.0046 13 7 10.7729 5.8471 -0.0058 14 6 12.2469 5.8759 -0.0065 15 6 12.6163 7.2501 -0.6188 16 1 12.5639 7.2204 -1.7071 17 6 14.0005 7.7043 -0.1515 18 6 11.5050 8.1609 -0.0332 19 1 11.3284 9.0191 -0.6816 20 7 11.8541 8.5994 1.3204 21 6 11.2887 9.7333 1.8399 22 1 10.5859 10.3045 1.2515 23 6 11.6190 10.1485 3.1225 24 7 12.4759 9.4526 3.8394 25 14 10.8483 11.6957 3.8309 26 1 11.6980 12.8679 3.5005 27 1 9.4951 11.8855 3.2494 28 1 10.7391 11.5635 5.3060 29 6 10.2715 7.2341 -0.0054 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.8567 0.6438 -0.8907 36 1 3.8573 0.6436 0.8893 37 1 3.8364 3.1235 0.8887 38 1 3.8357 3.1230 -0.8913 39 1 6.0353 1.5910 -0.0013 40 1 8.2056 2.9166 -0.8927 41 1 8.2065 2.9176 0.8872 42 1 8.1854 5.3968 0.8865 43 1 8.1847 5.3965 -0.8934 44 1 12.6417 5.0679 -0.6223 45 1 12.6283 5.7994 1.0116 46 1 14.0495 7.6599 0.9365 47 1 14.7608 7.0489 -0.5765 48 1 14.1777 8.7280 -0.4816 49 1 12.4856 8.0865 1.8486 50 1 12.7070 9.7430 4.7356 51 1 9.6881 7.4201 0.8963 52 1 9.6573 7.4080 -0.8891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673917580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:28 Heat of formation + Delta-G solvation = -117.876162 kcal Electronic energy + Delta-G solvation = -29284.574084 eV Core-core repulsion = 25091.074421 eV Total energy + Delta-G solvation = -4193.499664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16923 -39.54202 -38.46844 -37.62132 -35.75958 -33.91328 -33.06161 -32.41438 -31.94103 -30.46899 -27.88891 -27.67263 -26.84380 -25.52593 -24.13802 -23.72355 -22.20323 -21.91926 -20.46790 -19.27409 -18.74032 -17.71826 -17.32561 -17.04772 -16.85984 -16.27029 -16.21148 -15.79152 -15.65857 -15.26230 -15.14485 -14.64623 -14.53732 -14.25332 -13.74810 -13.53680 -13.34475 -13.02972 -12.90015 -12.76435 -12.45821 -12.39167 -12.32368 -12.10803 -11.92205 -11.89062 -11.61658 -11.58210 -11.52315 -11.18544 -11.10807 -10.92772 -10.75048 -10.45036 -10.25802 -10.19442 -10.02984 -9.92564 -9.68268 -9.56652 -9.37765 -9.00557 -8.23210 -7.06299 -5.83558 -3.13533 2.48105 2.70416 2.91508 3.28441 3.40385 3.46307 3.47603 3.48320 4.40397 4.41163 4.53474 4.57445 4.61364 4.81435 4.83678 4.86480 4.94604 4.97421 4.99574 5.05590 5.17913 5.20313 5.20993 5.25601 5.35957 5.52816 5.56005 5.57563 5.62699 5.66560 5.78376 5.83431 5.91835 5.95614 5.98344 6.12839 6.20472 6.28226 6.35695 6.39148 6.54876 6.61582 6.64905 6.77530 6.93991 7.20417 7.64833 7.89918 8.01364 8.34252 8.44170 9.46403 10.01020 10.35805 11.38489 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.001832 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.875102 B =15279.615384 C =16965.944862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.122 3.878 6 N -0.734 5.734 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.122 4.122 10 C -0.120 4.120 11 C 0.526 3.474 12 O -0.562 6.562 13 N -0.606 5.606 14 C 0.115 3.885 15 C -0.115 4.115 16 H 0.078 0.922 17 C -0.130 4.130 18 C 0.171 3.829 19 H 0.071 0.929 20 N -0.711 5.711 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.281 1.281 28 H -0.292 1.292 29 C 0.070 3.930 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.060 0.940 49 H 0.387 0.613 50 H 0.256 0.744 51 H 0.079 0.921 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 -16.844 -10.938 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.388 5.388 7 C 0.301 3.699 8 O -0.413 6.413 9 C -0.163 4.163 10 C -0.160 4.160 11 C 0.315 3.685 12 O -0.442 6.442 13 N -0.339 5.339 14 C -0.007 4.007 15 C -0.135 4.135 16 H 0.096 0.904 17 C -0.188 4.188 18 C 0.059 3.941 19 H 0.089 0.911 20 N -0.353 5.353 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.218 1.218 29 C -0.056 4.056 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.222 0.778 50 H 0.066 0.934 51 H 0.097 0.903 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.157 -16.657 -10.859 25.621 hybrid contribution -0.419 0.527 0.725 0.989 sum -16.576 -16.130 -10.134 25.252 Atomic orbital electron populations 1.22760 0.80642 1.02924 1.00175 1.87855 1.20026 1.27856 1.95488 1.22386 0.93242 0.84883 1.00834 1.21682 0.93981 0.97000 1.04268 1.21159 0.79976 0.96302 1.02805 1.45955 1.06587 1.09453 1.76768 1.20824 0.89830 0.83947 0.75251 1.90734 1.75269 1.26523 1.48799 1.21362 0.90020 0.99031 1.05863 1.21308 0.91297 0.97478 1.05924 1.20202 0.89047 0.83072 0.76171 1.90651 1.75331 1.26138 1.52090 1.48567 1.07312 1.06538 1.71439 1.22247 0.79893 0.97531 1.01062 1.22629 0.96862 0.94554 0.99443 0.90385 1.21537 0.93884 1.00717 1.02644 1.21213 0.90158 0.93636 0.89104 0.91075 1.42442 1.52421 1.29121 1.11268 1.19241 1.20257 1.00875 0.97348 0.90960 1.24742 0.99628 0.99097 0.97018 1.69659 1.36839 1.40133 1.11061 0.86202 0.78760 0.82995 0.78272 1.21685 1.20679 1.21822 1.23406 1.00211 0.80672 1.01294 0.89490 0.93901 0.93925 0.92781 0.92836 0.90266 0.90214 0.91185 0.91238 0.76259 0.88105 0.87984 0.88046 0.88409 0.91353 0.91290 0.91199 0.93742 0.92128 0.77777 0.93410 0.90255 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.05 10.70 -35.23 -0.38 -3.43 16 3 C 0.06 0.39 5.94 37.16 0.22 0.61 16 4 C -0.13 -0.76 5.70 -26.73 -0.15 -0.91 16 5 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 6 N -0.73 -5.97 5.56 -60.29 -0.33 -6.31 16 7 C 0.51 5.88 7.83 -10.98 -0.09 5.79 16 8 O -0.54 -8.21 15.98 5.55 0.09 -8.12 16 9 C -0.12 -1.35 4.99 -27.88 -0.14 -1.49 16 10 C -0.12 -1.62 4.18 -27.88 -0.12 -1.74 16 11 C 0.53 8.65 7.85 -10.99 -0.09 8.56 16 12 O -0.56 -10.45 16.24 5.56 0.09 -10.36 16 13 N -0.61 -10.21 3.34 -170.15 -0.57 -10.77 16 14 C 0.12 1.90 6.35 -2.53 -0.02 1.89 16 15 C -0.11 -1.79 3.51 -88.47 -0.31 -2.10 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.13 -2.04 8.85 37.16 0.33 -1.71 16 18 C 0.17 3.13 3.37 -66.10 -0.22 2.90 16 19 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 20 N -0.71 -16.47 4.56 -51.65 -0.24 -16.70 16 21 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 25 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 C 0.07 1.19 6.26 -2.81 -0.02 1.17 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 2.23 8.47 -40.82 -0.35 1.88 16 40 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.10 1.09 8.10 -51.93 -0.42 0.66 16 42 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 43 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 45 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 46 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 49 H 0.39 9.64 6.21 -40.82 -0.25 9.39 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 52 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 424.94 15.07 6.40 6.40 Total: -1.00 -33.44 424.94 -8.31 -41.75 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -9.33 Total: 8.94 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.25 Total: 8.22 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.41 Total: -60.16 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.20 Total: -21.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.44 -8.31 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673917580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.123 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds