Wall clock time and date at job start Wed Apr 1 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46925 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47188 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99676 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00641 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46906 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 17 17 N 1.46498 * 111.00162 * 155.16578 * 15 14 13 18 18 C 1.36942 * 120.00022 * 92.80865 * 17 15 14 19 19 H 1.08006 * 119.99757 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00359 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00164 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99855 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47464 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47060 * 120.00490 * 22 20 18 25 25 H 1.48500 * 109.47199 * 240.00019 * 22 20 18 26 26 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 27 27 H 1.08999 * 110.72303 * 82.85766 * 26 15 14 28 28 C 1.53005 * 110.87083 * 206.06082 * 26 15 14 29 29 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 30 30 H 1.09008 * 109.47033 * 60.00364 * 1 2 3 31 31 H 1.09003 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47762 * 300.00714 * 1 2 3 33 33 H 1.08994 * 109.47223 * 59.98915 * 3 2 1 34 34 H 1.09003 * 109.46489 * 299.99215 * 3 2 1 35 35 H 1.09004 * 109.47567 * 59.99937 * 4 3 2 36 36 H 1.08999 * 109.47200 * 299.99525 * 4 3 2 37 37 H 1.08995 * 109.47587 * 59.99480 * 5 4 3 38 38 H 1.09000 * 109.47472 * 299.99665 * 5 4 3 39 39 H 0.96997 * 120.00007 * 359.97438 * 6 5 4 40 40 H 1.08994 * 109.47096 * 59.99854 * 9 7 6 41 41 H 1.09003 * 109.46962 * 299.99352 * 9 7 6 42 42 H 1.09004 * 109.47321 * 60.00016 * 10 9 7 43 43 H 1.08999 * 109.46995 * 299.99930 * 10 9 7 44 44 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 45 45 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 46 46 H 0.96998 * 120.00750 * 272.81024 * 17 15 14 47 47 H 0.96996 * 120.00537 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46692 * 175.06169 * 28 26 15 49 49 H 1.08997 * 109.47070 * 295.05832 * 28 26 15 50 50 H 1.09002 * 109.47183 * 55.06216 * 28 26 15 51 51 H 1.09002 * 109.88367 * 61.60808 * 29 13 11 52 52 H 1.09000 * 109.88319 * 300.59426 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3820 3.5771 0.0000 8 8 5.8605 4.6720 -0.0005 9 6 7.8843 3.4581 0.0006 10 6 8.5066 4.8558 -0.0002 11 6 10.0089 4.7369 0.0010 12 8 10.5305 3.6419 0.0029 13 7 10.7729 5.8472 0.0001 14 6 10.2761 7.2386 -0.0041 15 6 11.4280 8.0730 0.6096 16 1 11.4160 8.0145 1.6980 17 7 11.3647 9.4658 0.1600 18 6 10.6947 10.3970 0.9079 19 1 10.2133 10.1046 1.8294 20 6 10.6351 11.7169 0.4822 21 7 11.2221 12.0734 -0.6406 22 14 9.7205 12.9868 1.5021 23 1 9.1523 12.3359 2.7098 24 1 10.6601 14.0603 1.9146 25 1 8.6226 13.5741 0.6929 26 6 12.6755 7.3570 0.0278 27 1 12.8904 7.7142 -0.9793 28 6 13.8893 7.5501 0.9391 29 6 12.2428 5.8759 0.0016 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.6885 1.8464 0.8898 34 1 1.6886 1.8463 -0.8901 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.8357 3.1239 0.8894 38 1 3.8365 3.1227 -0.8904 39 1 6.0353 1.5910 0.0008 40 1 8.2063 2.9169 -0.8891 41 1 8.2056 2.9174 0.8909 42 1 8.1847 5.3974 0.8893 43 1 8.1853 5.3960 -0.8907 44 1 9.3790 7.3215 0.6096 45 1 10.0699 7.5678 -1.0224 46 1 11.7973 9.7286 -0.6675 47 1 11.1802 12.9956 -0.9383 48 1 14.7272 6.9675 0.5563 49 1 14.1613 8.6053 0.9632 50 1 13.6440 7.2149 1.9469 51 1 12.6240 5.3944 -0.8989 52 1 12.6227 5.3630 0.8852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673917581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:31 Heat of formation + Delta-G solvation = -121.665602 kcal Electronic energy + Delta-G solvation = -29053.395215 eV Core-core repulsion = 24859.731229 eV Total energy + Delta-G solvation = -4193.663986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21609 -39.58154 -38.47664 -37.60195 -35.77985 -34.07994 -33.12941 -32.50310 -31.99126 -30.71226 -27.89356 -27.53014 -26.91132 -25.57708 -24.24185 -23.75502 -22.19031 -21.50287 -20.51410 -19.88035 -18.89497 -17.60574 -17.22377 -17.08902 -16.87224 -16.35222 -16.30048 -15.85513 -15.75916 -15.28084 -15.14202 -14.91117 -14.46103 -14.07686 -13.64329 -13.53682 -13.32478 -13.09003 -12.97846 -12.82219 -12.67143 -12.44565 -12.39690 -12.33641 -12.07144 -11.82645 -11.62593 -11.61652 -11.59131 -11.24430 -11.11343 -11.00969 -10.72622 -10.60984 -10.21650 -10.20189 -10.05357 -9.96012 -9.82288 -9.64674 -9.39700 -9.02597 -8.34903 -7.09604 -5.86109 -3.16815 2.45743 2.67553 2.81328 3.21326 3.39289 3.42343 3.46346 3.47606 4.37238 4.39262 4.51154 4.55867 4.59495 4.77237 4.83116 4.85784 4.92926 4.94234 4.96576 5.02521 5.14534 5.15214 5.18082 5.22823 5.23241 5.49658 5.55332 5.56214 5.61158 5.64656 5.73656 5.78393 5.84111 5.88492 5.93586 6.02232 6.10428 6.21702 6.24969 6.38720 6.47116 6.53212 6.60730 6.61764 6.86137 7.18116 7.63629 7.78743 7.99132 8.30504 8.34524 9.43603 9.96792 10.31722 11.35814 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.001836 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.996530 B =15246.304957 C =17443.715399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.121 3.879 6 N -0.734 5.734 7 C 0.513 3.487 8 O -0.535 6.535 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.527 3.473 12 O -0.561 6.561 13 N -0.612 5.612 14 C 0.070 3.930 15 C 0.177 3.823 16 H 0.069 0.931 17 N -0.709 5.709 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.116 4.116 27 H 0.083 0.917 28 C -0.133 4.133 29 C 0.116 3.884 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.387 0.613 47 H 0.256 0.744 48 H 0.048 0.952 49 H 0.067 0.933 50 H 0.052 0.948 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 -23.336 0.731 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.388 5.388 7 C 0.300 3.700 8 O -0.411 6.411 9 C -0.162 4.162 10 C -0.161 4.161 11 C 0.316 3.684 12 O -0.441 6.441 13 N -0.345 5.345 14 C -0.056 4.056 15 C 0.065 3.935 16 H 0.087 0.913 17 N -0.349 5.349 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.136 4.136 27 H 0.102 0.898 28 C -0.191 4.191 29 C -0.007 4.007 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.221 0.779 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.854 -23.181 0.859 26.521 hybrid contribution -0.552 0.711 0.126 0.909 sum -13.407 -22.470 0.985 26.184 Atomic orbital electron populations 1.22760 0.80628 1.02923 1.00193 1.87853 1.20038 1.27857 1.95493 1.22385 0.93228 0.84887 1.00864 1.21678 0.93998 0.96985 1.04241 1.21163 0.79939 0.96311 1.02856 1.45952 1.06605 1.09421 1.76786 1.20810 0.89809 0.83979 0.75368 1.90747 1.75237 1.26486 1.48651 1.21360 0.90118 0.98930 1.05841 1.21323 0.91117 0.97562 1.06117 1.20250 0.89096 0.82973 0.76110 1.90657 1.75350 1.26141 1.51910 1.48601 1.07280 1.06904 1.71732 1.23630 1.00613 0.79227 1.02119 1.21365 0.89886 0.85220 0.97062 0.91324 1.42301 1.63748 1.01571 1.27256 1.19302 1.26465 0.88778 1.03331 0.90882 1.24756 1.00812 0.97341 0.97514 1.69663 1.48053 1.17504 1.22400 0.86124 0.79071 0.81684 0.79325 1.20439 1.21809 1.21767 1.22532 0.96867 0.93234 1.00925 0.89828 1.21646 0.96256 1.02555 0.98595 1.21960 0.80085 0.97257 1.01376 0.93901 0.89489 0.93907 0.92795 0.92793 0.90258 0.90251 0.91181 0.91188 0.76286 0.88069 0.88044 0.88088 0.88126 0.90974 0.91061 0.77858 0.93396 0.93267 0.91404 0.92896 0.92104 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.00 10.70 -35.23 -0.38 -3.38 16 3 C 0.06 0.38 5.94 37.16 0.22 0.60 16 4 C -0.13 -0.73 5.70 -26.73 -0.15 -0.88 16 5 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 6 N -0.73 -5.72 5.56 -60.29 -0.33 -6.06 16 7 C 0.51 5.68 7.83 -10.98 -0.09 5.59 16 8 O -0.54 -8.11 15.98 5.56 0.09 -8.02 16 9 C -0.12 -1.27 4.99 -27.88 -0.14 -1.41 16 10 C -0.12 -1.56 4.01 -27.88 -0.11 -1.67 16 11 C 0.53 8.09 7.85 -10.99 -0.09 8.00 16 12 O -0.56 -9.75 16.31 5.55 0.09 -9.66 16 13 N -0.61 -9.64 3.34 -170.26 -0.57 -10.20 16 14 C 0.07 1.19 6.41 -2.35 -0.02 1.17 16 15 C 0.18 3.28 3.17 -65.78 -0.21 3.07 16 16 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 17 N -0.71 -16.50 5.24 -51.35 -0.27 -16.77 16 18 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.12 -1.80 3.19 -88.78 -0.28 -2.09 16 27 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 28 C -0.13 -1.89 9.14 37.16 0.34 -1.55 16 29 C 0.12 1.73 6.45 -3.07 -0.02 1.71 16 30 H 0.04 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 2.06 8.47 -40.82 -0.35 1.71 16 40 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.10 1.32 7.82 -51.93 -0.41 0.91 16 43 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 44 H 0.07 1.21 7.50 -51.93 -0.39 0.82 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.39 9.62 7.76 -40.82 -0.32 9.30 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.06 0.94 7.82 -51.93 -0.41 0.54 16 LS Contribution 427.67 15.07 6.44 6.44 Total: -1.00 -33.17 427.67 -8.34 -41.51 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -9.42 Total: 7.90 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 0.30 Total: 7.73 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.45 Total: -59.25 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.20 Total: -21.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -33.17 -8.34 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673917581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.153 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds