Wall clock time and date at job start Wed Apr 1 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46925 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47188 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99676 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00641 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46906 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 17 17 N 1.46498 * 111.00162 * 155.16578 * 15 14 13 18 18 C 1.36942 * 120.00022 * 92.80865 * 17 15 14 19 19 H 1.08006 * 119.99757 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00359 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00164 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99855 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47464 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47060 * 120.00490 * 22 20 18 25 25 H 1.48500 * 109.47199 * 240.00019 * 22 20 18 26 26 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 27 27 H 1.08999 * 110.72303 * 82.85766 * 26 15 14 28 28 C 1.53005 * 110.87083 * 206.06082 * 26 15 14 29 29 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 30 30 H 1.09008 * 109.47033 * 60.00364 * 1 2 3 31 31 H 1.09003 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47762 * 300.00714 * 1 2 3 33 33 H 1.08994 * 109.47223 * 59.98915 * 3 2 1 34 34 H 1.09003 * 109.46489 * 299.99215 * 3 2 1 35 35 H 1.09004 * 109.47567 * 59.99937 * 4 3 2 36 36 H 1.08999 * 109.47200 * 299.99525 * 4 3 2 37 37 H 1.08995 * 109.47587 * 59.99480 * 5 4 3 38 38 H 1.09000 * 109.47472 * 299.99665 * 5 4 3 39 39 H 0.96997 * 120.00007 * 359.97438 * 6 5 4 40 40 H 1.08994 * 109.47096 * 59.99854 * 9 7 6 41 41 H 1.09003 * 109.46962 * 299.99352 * 9 7 6 42 42 H 1.09004 * 109.47321 * 60.00016 * 10 9 7 43 43 H 1.08999 * 109.46995 * 299.99930 * 10 9 7 44 44 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 45 45 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 46 46 H 0.96998 * 120.00750 * 272.81024 * 17 15 14 47 47 H 0.96996 * 120.00537 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46692 * 175.06169 * 28 26 15 49 49 H 1.08997 * 109.47070 * 295.05832 * 28 26 15 50 50 H 1.09002 * 109.47183 * 55.06216 * 28 26 15 51 51 H 1.09002 * 109.88367 * 61.60808 * 29 13 11 52 52 H 1.09000 * 109.88319 * 300.59426 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3820 3.5771 0.0000 8 8 5.8605 4.6720 -0.0005 9 6 7.8843 3.4581 0.0006 10 6 8.5066 4.8558 -0.0002 11 6 10.0089 4.7369 0.0010 12 8 10.5305 3.6419 0.0029 13 7 10.7729 5.8472 0.0001 14 6 10.2761 7.2386 -0.0041 15 6 11.4280 8.0730 0.6096 16 1 11.4160 8.0145 1.6980 17 7 11.3647 9.4658 0.1600 18 6 10.6947 10.3970 0.9079 19 1 10.2133 10.1046 1.8294 20 6 10.6351 11.7169 0.4822 21 7 11.2221 12.0734 -0.6406 22 14 9.7205 12.9868 1.5021 23 1 9.1523 12.3359 2.7098 24 1 10.6601 14.0603 1.9146 25 1 8.6226 13.5741 0.6929 26 6 12.6755 7.3570 0.0278 27 1 12.8904 7.7142 -0.9793 28 6 13.8893 7.5501 0.9391 29 6 12.2428 5.8759 0.0016 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.6885 1.8464 0.8898 34 1 1.6886 1.8463 -0.8901 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.8357 3.1239 0.8894 38 1 3.8365 3.1227 -0.8904 39 1 6.0353 1.5910 0.0008 40 1 8.2063 2.9169 -0.8891 41 1 8.2056 2.9174 0.8909 42 1 8.1847 5.3974 0.8893 43 1 8.1853 5.3960 -0.8907 44 1 9.3790 7.3215 0.6096 45 1 10.0699 7.5678 -1.0224 46 1 11.7973 9.7286 -0.6675 47 1 11.1802 12.9956 -0.9383 48 1 14.7272 6.9675 0.5563 49 1 14.1613 8.6053 0.9632 50 1 13.6440 7.2149 1.9469 51 1 12.6240 5.3944 -0.8989 52 1 12.6227 5.3630 0.8852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673917581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:30 Heat of formation + Delta-G solvation = -145.063890 kcal Electronic energy + Delta-G solvation = -29054.409841 eV Core-core repulsion = 24859.731229 eV Total energy + Delta-G solvation = -4194.678612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31826 -40.64267 -39.02912 -38.89701 -36.49356 -35.85671 -34.23113 -33.70359 -32.79631 -32.41953 -29.15588 -28.60496 -27.72088 -26.37030 -25.83104 -24.86103 -22.97370 -22.70552 -21.45207 -21.20768 -20.11323 -19.13339 -18.60637 -17.68375 -17.54415 -17.44983 -17.32937 -16.86467 -16.53921 -16.38633 -16.18375 -15.73703 -15.67865 -15.31861 -15.20541 -14.57393 -14.50313 -14.42549 -14.37293 -14.04028 -13.66443 -13.35208 -13.26340 -13.07012 -13.02784 -12.92053 -12.88724 -12.83057 -12.72827 -12.21405 -12.18670 -12.09148 -12.08065 -12.06625 -11.99247 -11.69950 -11.40519 -11.02844 -10.98711 -10.87451 -10.65222 -10.14213 -9.68073 -9.03087 -7.94184 -5.23421 1.49336 1.50838 1.57244 1.59302 1.59638 1.83226 2.19461 2.57360 2.88161 3.35279 3.38777 3.64952 3.80744 3.89605 3.92749 3.96412 3.98508 4.08278 4.14035 4.18977 4.19851 4.38230 4.42308 4.48005 4.48900 4.50282 4.55278 4.57019 4.63052 4.69271 4.72109 4.81123 4.85623 4.88912 4.92196 4.95559 5.07630 5.09294 5.11830 5.13600 5.23356 5.36173 5.41036 5.47105 5.56557 6.18155 6.27041 6.48372 6.51274 7.08486 7.21269 7.35055 8.06299 8.30497 9.28713 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.001836 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.996530 B =15246.304957 C =17443.715399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.123 3.877 6 N -0.719 5.719 7 C 0.515 3.485 8 O -0.582 6.582 9 C -0.114 4.114 10 C -0.117 4.117 11 C 0.529 3.471 12 O -0.577 6.577 13 N -0.614 5.614 14 C 0.084 3.916 15 C 0.170 3.830 16 H 0.066 0.934 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.965 5.965 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.297 1.297 26 C -0.106 4.106 27 H 0.078 0.922 28 C -0.128 4.128 29 C 0.119 3.881 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.074 0.926 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -25.391 1.498 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.302 3.698 8 O -0.462 6.462 9 C -0.154 4.154 10 C -0.157 4.157 11 C 0.319 3.681 12 O -0.458 6.458 13 N -0.347 5.347 14 C -0.042 4.042 15 C 0.060 3.940 16 H 0.084 0.916 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.615 5.615 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.224 1.224 26 C -0.125 4.125 27 H 0.096 0.904 28 C -0.185 4.185 29 C -0.004 4.004 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.290 -25.336 1.655 28.659 hybrid contribution -0.430 1.217 -0.104 1.294 sum -13.720 -24.120 1.551 27.792 Atomic orbital electron populations 1.22923 0.79453 1.03848 1.00868 1.87809 1.21468 1.28635 1.95644 1.22452 0.93363 0.84574 1.01342 1.21554 0.93731 0.95717 1.04698 1.21167 0.79488 0.97306 1.02175 1.45842 1.06842 1.09443 1.75030 1.20898 0.90169 0.83901 0.74792 1.90734 1.75976 1.28287 1.51170 1.21311 0.89462 0.97545 1.07079 1.21297 0.89432 0.99228 1.05761 1.20590 0.89861 0.82387 0.75255 1.90649 1.75879 1.26558 1.52687 1.48621 1.07737 1.06424 1.71918 1.23248 0.99852 0.79787 1.01288 1.21525 0.92072 0.83415 0.97026 0.91580 1.42386 1.63520 1.03179 1.26685 1.19650 1.25096 0.89303 1.03185 0.90366 1.25463 1.02526 0.99289 0.98787 1.69800 1.50182 1.17383 1.24160 0.85180 0.77592 0.79341 0.78279 1.19059 1.22221 1.22396 1.22435 0.96132 0.93269 1.00706 0.90388 1.21604 0.96402 1.01705 0.98813 1.21983 0.79639 0.96505 1.02253 0.93234 0.88536 0.93233 0.92353 0.92365 0.89774 0.89748 0.91897 0.91933 0.74465 0.86813 0.86716 0.88355 0.88558 0.90824 0.92130 0.79052 0.94047 0.90723 0.93425 0.92176 0.91265 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -5.85 10.70 -148.98 -1.59 -7.45 16 3 C 0.06 0.64 5.94 71.98 0.43 1.07 16 4 C -0.12 -1.14 5.70 30.59 0.17 -0.96 16 5 C 0.12 1.64 5.67 86.38 0.49 2.13 16 6 N -0.72 -9.99 5.56 -463.06 -2.57 -12.57 16 7 C 0.51 10.77 7.83 87.66 0.69 11.46 16 8 O -0.58 -17.48 15.98 -3.02 -0.05 -17.53 16 9 C -0.11 -2.15 4.99 29.85 0.15 -2.00 16 10 C -0.12 -2.88 4.01 29.85 0.12 -2.76 16 11 C 0.53 15.38 7.85 87.66 0.69 16.07 16 12 O -0.58 -18.81 16.31 -3.06 -0.05 -18.86 16 13 N -0.61 -18.45 3.34 -810.98 -2.71 -21.16 16 14 C 0.08 2.80 6.41 86.79 0.56 3.36 16 15 C 0.17 6.21 3.17 46.38 0.15 6.36 16 16 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 17 N -0.72 -33.65 5.24 -316.38 -1.66 -35.31 16 18 C -0.24 -12.62 9.96 84.03 0.84 -11.78 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 21 N -0.97 -57.02 13.06 21.65 0.28 -56.73 16 22 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 C -0.11 -3.17 3.19 -9.60 -0.03 -3.20 16 27 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16 28 C -0.13 -3.42 9.14 71.98 0.66 -2.76 16 29 C 0.12 3.31 6.45 86.73 0.56 3.87 16 30 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 3.27 8.47 -92.71 -0.79 2.48 16 40 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.10 2.49 7.82 -2.38 -0.02 2.47 16 43 H 0.10 2.47 8.10 -2.39 -0.02 2.46 16 44 H 0.07 2.43 7.50 -2.39 -0.02 2.41 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.38 19.07 7.76 -92.71 -0.72 18.35 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 Total: -1.00 -70.59 427.67 0.26 -70.33 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.60 Total: 33.24 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.18 Total: 19.02 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.65 Total: -125.77 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.69 Total: -43.85 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.59 0.26 -70.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673917581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.732 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds