Wall clock time and date at job start Wed Apr 1 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47448 * 180.02562 * 6 5 4 8 8 C 1.46902 * 111.00078 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47085 * 179.97438 * 8 7 6 10 10 O 1.21291 * 120.00013 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99778 * 179.97438 * 9 8 7 12 12 C 1.37100 * 119.99905 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00093 * 0.02562 * 12 11 9 14 14 C 1.38955 * 120.00227 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99623 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00046 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47027 * 60.00144 * 16 14 12 18 18 H 1.48498 * 109.46931 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47037 * 300.00048 * 16 14 12 20 20 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 21 21 C 1.34777 * 119.99525 * 274.99614 * 20 2 1 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 2 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 2 24 24 H 1.08994 * 109.52275 * 60.40366 * 23 21 20 25 25 C 1.53176 * 109.52262 * 180.59511 * 23 21 20 26 26 C 1.53179 * 109.03963 * 176.88556 * 25 23 21 27 27 C 1.53090 * 109.16124 * 303.02107 * 26 25 23 28 28 O 1.42897 * 109.41797 * 57.60576 * 27 26 25 29 29 C 1.42904 * 114.09557 * 298.84079 * 28 27 26 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 34 34 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 35 35 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 36 36 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 37 37 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 38 38 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 39 39 H 1.00892 * 111.00428 * 56.04150 * 7 6 5 40 40 H 1.09004 * 109.46352 * 299.99518 * 8 7 6 41 41 H 1.08996 * 109.47189 * 59.99294 * 8 7 6 42 42 H 0.97003 * 120.00296 * 0.02562 * 11 9 8 43 43 H 0.96994 * 119.99794 * 179.97438 * 15 14 12 44 44 H 0.97000 * 120.00580 * 95.00360 * 20 2 1 45 45 H 1.09002 * 109.54113 * 296.75001 * 25 23 21 46 46 H 1.08999 * 109.54551 * 57.01758 * 25 23 21 47 47 H 1.09000 * 109.52552 * 183.11077 * 26 25 23 48 48 H 1.09002 * 109.57085 * 62.94947 * 26 25 23 49 49 H 1.09008 * 109.47677 * 297.62140 * 27 26 25 50 50 H 1.09005 * 109.49020 * 177.60013 * 27 26 25 51 51 H 1.08995 * 109.48515 * 301.17605 * 29 28 27 52 52 H 1.09006 * 109.48044 * 181.14187 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5389 -1.2315 -2.6245 8 6 6.0652 -1.9141 -3.8141 9 6 7.5665 -1.7866 -3.8434 10 8 8.1415 -1.1858 -2.9604 11 7 8.2703 -2.3402 -4.8506 12 6 9.6360 -2.2238 -4.8776 13 1 10.1481 -1.6888 -4.0914 14 6 10.3617 -2.7951 -5.9158 15 7 9.7388 -3.4465 -6.8721 16 14 12.2227 -2.6371 -5.9521 17 1 12.7960 -3.2567 -4.7304 18 1 12.7547 -3.3277 -7.1543 19 1 12.5966 -1.2008 -6.0008 20 7 2.0184 -0.6908 1.1960 21 6 2.1472 -0.0185 2.3570 22 8 1.8583 1.1582 2.4118 23 6 2.6437 -0.7305 3.5889 24 1 3.6445 -1.1211 3.4053 25 6 2.6829 0.2493 4.7656 26 6 3.1141 -0.5032 6.0283 27 6 2.1503 -1.6672 6.2733 28 8 2.1384 -2.5231 5.1290 29 6 1.6980 -1.8857 3.9283 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2058 34 1 1.6053 -0.2615 -2.1371 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4262 37 1 3.7865 -2.3849 -2.5190 38 1 3.6402 -0.8754 -3.4508 39 1 5.9626 -1.5924 -1.7830 40 1 5.7903 -2.9683 -3.7793 41 1 5.6446 -1.4583 -4.7104 42 1 7.8104 -2.8204 -5.5570 43 1 10.2453 -3.8449 -7.5970 44 1 2.2492 -1.6319 1.1524 45 1 3.3970 1.0451 4.5538 46 1 1.6920 0.6774 4.9169 47 1 3.0914 0.1744 6.8818 48 1 4.1249 -0.8890 5.8961 49 1 1.1469 -1.2779 6.4466 50 1 2.4768 -2.2321 7.1465 51 1 0.6888 -1.4993 4.0708 52 1 1.6989 -2.6080 3.1119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675862779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:39 Heat of formation + Delta-G solvation = -146.368529 kcal Electronic energy + Delta-G solvation = -29242.655100 eV Core-core repulsion = 25047.919914 eV Total energy + Delta-G solvation = -4194.735185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78018 -39.12675 -38.31511 -37.14538 -35.53413 -34.02355 -33.89059 -32.89104 -31.70049 -31.18985 -30.30639 -27.33810 -25.58965 -25.19125 -24.83993 -23.49789 -21.97541 -21.42877 -20.95068 -20.29880 -19.20512 -17.87763 -17.72796 -16.91263 -16.73552 -16.30829 -15.97585 -15.69230 -15.51812 -14.98516 -14.78475 -14.66172 -14.43428 -14.17305 -14.07432 -13.85858 -13.68498 -13.50087 -13.27305 -13.12506 -12.95907 -12.62819 -12.45849 -12.06020 -11.93586 -11.82569 -11.59217 -11.56426 -11.46382 -11.40134 -11.32613 -11.02793 -10.93487 -10.86251 -10.78985 -10.43921 -10.21219 -10.20712 -9.89009 -9.49727 -9.40183 -8.45684 -8.04859 -7.95432 -6.41342 -3.82175 2.29614 2.79290 3.20548 3.26033 3.30639 3.35676 3.91319 4.04332 4.12576 4.23482 4.31492 4.34205 4.46357 4.55118 4.64364 4.74946 4.78620 4.79415 4.89783 5.05134 5.08458 5.13404 5.18134 5.24279 5.25362 5.28336 5.30970 5.38890 5.41831 5.48653 5.50838 5.54660 5.67466 5.68898 5.73306 5.79873 5.84296 5.88629 5.98877 6.05291 6.16502 6.23430 6.28896 6.63474 7.15170 7.23863 7.55374 7.67318 7.89608 8.06633 8.61810 9.18184 9.54684 10.06372 10.76345 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.001675 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.079004 B =16717.358443 C =18034.238670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.723 5.723 21 C 0.522 3.478 22 O -0.536 6.536 23 C -0.146 4.146 24 H 0.109 0.891 25 C -0.102 4.102 26 C -0.158 4.158 27 C 0.057 3.943 28 O -0.376 6.376 29 C 0.074 3.926 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.348 0.652 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.400 0.600 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.052 0.948 50 H 0.096 0.904 51 H 0.056 0.944 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.403 1.188 19.622 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.375 5.375 21 C 0.308 3.692 22 O -0.412 6.412 23 C -0.168 4.168 24 H 0.127 0.873 25 C -0.140 4.140 26 C -0.195 4.195 27 C -0.020 4.020 28 O -0.295 6.295 29 C -0.004 4.004 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.234 0.766 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.114 0.886 51 H 0.074 0.926 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.088 2.777 19.771 29.774 hybrid contribution 0.634 -1.389 -0.489 1.603 sum -21.454 1.388 19.282 28.879 Atomic orbital electron populations 1.22171 0.95250 1.02071 1.02603 1.21029 0.93803 0.97844 0.83713 0.89165 1.21878 0.96353 1.00957 0.97187 1.21556 0.93917 1.02286 0.97735 1.21974 0.88802 0.97791 0.98458 1.60045 1.03680 1.61134 1.05448 1.21666 0.95210 0.96617 0.94673 1.19829 0.88057 0.84740 0.84820 1.90521 1.71147 1.45941 1.39161 1.41860 1.07399 1.48392 1.22393 1.19662 0.81536 1.32808 1.08958 0.87981 1.25267 1.00717 0.96564 0.95410 1.69603 1.36792 1.35805 1.12152 0.85908 0.82091 0.78609 0.77554 1.19918 1.20978 1.19881 1.46164 1.67474 1.14067 1.09799 1.20406 0.77264 0.87253 0.84318 1.90711 1.49489 1.15940 1.85046 1.22054 1.02560 0.97961 0.94217 0.87347 1.21399 1.03255 0.97065 0.92261 1.22238 1.00683 0.98057 0.98550 1.22662 0.98644 0.92099 0.88590 1.87979 1.87682 1.36854 1.16939 1.22483 0.95823 0.93953 0.88125 0.92234 0.91460 0.92479 0.91383 0.90029 0.90761 0.92041 0.95750 0.91171 0.83287 0.93973 0.89656 0.77459 0.91832 0.76560 0.90486 0.90980 0.90318 0.90686 0.93008 0.88555 0.92577 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.14 1.09 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 4 C -0.13 -0.88 4.75 -26.73 -0.13 -1.00 16 5 C -0.12 -1.13 5.36 -26.74 -0.14 -1.28 16 6 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 7 N -0.67 -10.89 6.12 -115.05 -0.70 -11.59 16 8 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 9 C 0.44 10.54 7.82 -10.99 -0.09 10.46 16 10 O -0.58 -16.11 15.78 5.55 0.09 -16.03 16 11 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 12 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 13 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 N -0.72 -5.22 4.43 -53.80 -0.24 -5.46 16 21 C 0.52 4.84 7.13 -10.98 -0.08 4.77 16 22 O -0.54 -7.01 15.63 5.55 0.09 -6.92 16 23 C -0.15 -1.08 2.73 -91.63 -0.25 -1.33 16 24 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 25 C -0.10 -0.78 4.62 -26.55 -0.12 -0.90 16 26 C -0.16 -0.94 6.14 -26.59 -0.16 -1.10 16 27 C 0.06 0.34 6.84 37.20 0.25 0.59 16 28 O -0.38 -3.00 10.77 -35.23 -0.38 -3.37 16 29 C 0.07 0.47 6.00 37.21 0.22 0.70 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.59 7.75 -51.92 -0.40 0.19 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.35 5.81 8.43 -39.30 -0.33 5.48 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.40 2.05 8.06 -40.82 -0.33 1.72 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.10 0.47 7.63 -51.93 -0.40 0.07 16 LS Contribution 421.69 15.07 6.35 6.35 Total: -1.00 -34.11 421.69 -9.05 -43.16 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -9.29 Total: 11.61 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.61 Total: 4.50 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.28 Total: -55.44 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.20 Total: -26.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.11 -9.05 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.209 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds