Wall clock time and date at job start Wed Apr 1 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47448 * 180.02562 * 6 5 4 8 8 C 1.46902 * 111.00078 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47085 * 179.97438 * 8 7 6 10 10 O 1.21291 * 120.00013 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99778 * 179.97438 * 9 8 7 12 12 C 1.37100 * 119.99905 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00093 * 0.02562 * 12 11 9 14 14 C 1.38955 * 120.00227 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99623 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00046 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47027 * 60.00144 * 16 14 12 18 18 H 1.48498 * 109.46931 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47037 * 300.00048 * 16 14 12 20 20 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 21 21 C 1.34777 * 119.99525 * 274.99614 * 20 2 1 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 2 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 2 24 24 H 1.08994 * 109.52275 * 60.40366 * 23 21 20 25 25 C 1.53176 * 109.52262 * 180.59511 * 23 21 20 26 26 C 1.53179 * 109.03963 * 176.88556 * 25 23 21 27 27 C 1.53090 * 109.16124 * 303.02107 * 26 25 23 28 28 O 1.42897 * 109.41797 * 57.60576 * 27 26 25 29 29 C 1.42904 * 114.09557 * 298.84079 * 28 27 26 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 34 34 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 35 35 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 36 36 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 37 37 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 38 38 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 39 39 H 1.00892 * 111.00428 * 56.04150 * 7 6 5 40 40 H 1.09004 * 109.46352 * 299.99518 * 8 7 6 41 41 H 1.08996 * 109.47189 * 59.99294 * 8 7 6 42 42 H 0.97003 * 120.00296 * 0.02562 * 11 9 8 43 43 H 0.96994 * 119.99794 * 179.97438 * 15 14 12 44 44 H 0.97000 * 120.00580 * 95.00360 * 20 2 1 45 45 H 1.09002 * 109.54113 * 296.75001 * 25 23 21 46 46 H 1.08999 * 109.54551 * 57.01758 * 25 23 21 47 47 H 1.09000 * 109.52552 * 183.11077 * 26 25 23 48 48 H 1.09002 * 109.57085 * 62.94947 * 26 25 23 49 49 H 1.09008 * 109.47677 * 297.62140 * 27 26 25 50 50 H 1.09005 * 109.49020 * 177.60013 * 27 26 25 51 51 H 1.08995 * 109.48515 * 301.17605 * 29 28 27 52 52 H 1.09006 * 109.48044 * 181.14187 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5389 -1.2315 -2.6245 8 6 6.0652 -1.9141 -3.8141 9 6 7.5665 -1.7866 -3.8434 10 8 8.1415 -1.1858 -2.9604 11 7 8.2703 -2.3402 -4.8506 12 6 9.6360 -2.2238 -4.8776 13 1 10.1481 -1.6888 -4.0914 14 6 10.3617 -2.7951 -5.9158 15 7 9.7388 -3.4465 -6.8721 16 14 12.2227 -2.6371 -5.9521 17 1 12.7960 -3.2567 -4.7304 18 1 12.7547 -3.3277 -7.1543 19 1 12.5966 -1.2008 -6.0008 20 7 2.0184 -0.6908 1.1960 21 6 2.1472 -0.0185 2.3570 22 8 1.8583 1.1582 2.4118 23 6 2.6437 -0.7305 3.5889 24 1 3.6445 -1.1211 3.4053 25 6 2.6829 0.2493 4.7656 26 6 3.1141 -0.5032 6.0283 27 6 2.1503 -1.6672 6.2733 28 8 2.1384 -2.5231 5.1290 29 6 1.6980 -1.8857 3.9283 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2058 34 1 1.6053 -0.2615 -2.1371 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4262 37 1 3.7865 -2.3849 -2.5190 38 1 3.6402 -0.8754 -3.4508 39 1 5.9626 -1.5924 -1.7830 40 1 5.7903 -2.9683 -3.7793 41 1 5.6446 -1.4583 -4.7104 42 1 7.8104 -2.8204 -5.5570 43 1 10.2453 -3.8449 -7.5970 44 1 2.2492 -1.6319 1.1524 45 1 3.3970 1.0451 4.5538 46 1 1.6920 0.6774 4.9169 47 1 3.0914 0.1744 6.8818 48 1 4.1249 -0.8890 5.8961 49 1 1.1469 -1.2779 6.4466 50 1 2.4768 -2.2321 7.1465 51 1 0.6888 -1.4993 4.0708 52 1 1.6989 -2.6080 3.1119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675862779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:38 Heat of formation + Delta-G solvation = -172.298076 kcal Electronic energy + Delta-G solvation = -29243.779489 eV Core-core repulsion = 25047.919914 eV Total energy + Delta-G solvation = -4195.859575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45251 -40.17014 -39.71295 -38.02267 -36.67333 -35.85701 -34.64384 -33.69984 -33.26006 -32.37650 -31.01698 -28.64939 -26.69588 -26.07855 -25.55102 -24.79142 -22.69473 -22.23618 -21.61498 -21.05383 -20.90657 -19.90671 -18.38316 -17.85866 -17.53776 -17.29420 -17.06609 -16.67919 -16.50003 -16.14471 -16.00730 -15.68401 -15.55056 -15.31908 -15.20297 -14.84760 -14.64482 -14.40934 -14.12250 -14.08167 -13.88771 -13.55829 -13.47817 -13.25515 -13.05182 -12.97282 -12.76418 -12.61439 -12.44443 -12.39091 -12.17699 -12.14886 -12.09031 -11.92523 -11.68850 -11.57222 -11.50799 -11.39903 -10.90017 -10.50717 -10.36285 -10.09100 -10.02660 -9.29907 -8.47258 -5.96232 1.39517 1.41511 1.52497 1.56618 2.04302 2.16027 2.28929 2.87230 2.92761 3.19822 3.50140 3.54785 3.72253 3.76503 3.83071 3.95446 4.06302 4.10728 4.13404 4.24099 4.31646 4.37173 4.41236 4.44236 4.50732 4.57889 4.59724 4.65521 4.68432 4.71215 4.77845 4.83604 4.87142 4.89422 4.93115 5.02112 5.09815 5.10248 5.25536 5.27963 5.31048 5.39751 5.41913 5.58002 5.90440 6.13101 6.14061 6.42781 6.52973 6.59503 7.11684 7.22490 7.55243 8.10812 8.69798 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.001675 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.079004 B =16717.358443 C =18034.238670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.112 4.112 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.691 5.691 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.572 5.572 12 C -0.337 4.337 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.273 1.273 20 N -0.711 5.711 21 C 0.520 3.480 22 O -0.580 6.580 23 C -0.141 4.141 24 H 0.113 0.887 25 C -0.103 4.103 26 C -0.152 4.152 27 C 0.052 3.948 28 O -0.392 6.392 29 C 0.076 3.924 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.342 0.658 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.111 0.889 51 H 0.056 0.944 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.431 -0.461 19.306 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.466 4.466 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.199 1.199 20 N -0.363 5.363 21 C 0.306 3.694 22 O -0.460 6.460 23 C -0.162 4.162 24 H 0.131 0.869 25 C -0.141 4.141 26 C -0.190 4.190 27 C -0.024 4.024 28 O -0.311 6.311 29 C -0.001 4.001 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.250 0.750 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.129 0.871 51 H 0.075 0.925 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.149 1.084 19.429 30.241 hybrid contribution 0.916 -0.842 -0.376 1.300 sum -22.232 0.242 19.053 29.281 Atomic orbital electron populations 1.22104 0.94191 1.03010 1.02113 1.20987 0.94551 0.96628 0.84217 0.92020 1.21788 0.94033 1.02311 0.96929 1.21483 0.95874 1.00517 0.97001 1.22074 0.85819 0.99345 0.99476 1.60059 1.06402 1.61334 1.04541 1.21525 0.90277 0.98623 0.96213 1.20957 0.90687 0.82814 0.83286 1.90488 1.72865 1.47392 1.40505 1.41930 1.06868 1.48999 1.23154 1.19634 0.83097 1.34437 1.09447 0.90423 1.26047 1.04960 0.95644 0.94589 1.69661 1.38373 1.35617 1.12307 0.84986 0.76735 0.78562 0.78033 1.19638 1.19361 1.19852 1.46099 1.66476 1.14605 1.09140 1.20746 0.76606 0.86767 0.85232 1.90691 1.51611 1.17890 1.85765 1.22032 1.02983 0.98067 0.93162 0.86899 1.21380 1.02292 0.97009 0.93426 1.22208 1.00504 0.98188 0.98050 1.22810 0.98999 0.92024 0.88555 1.87958 1.87805 1.37675 1.17621 1.22546 0.95305 0.93836 0.88400 0.94192 0.90538 0.90731 0.89040 0.89036 0.93149 0.92082 0.93604 0.90516 0.83924 0.91372 0.87919 0.76902 0.91246 0.74983 0.92103 0.91903 0.89066 0.90924 0.92390 0.87127 0.92547 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 71.98 0.68 -1.24 16 2 C 0.14 2.03 2.57 44.99 0.12 2.15 16 3 H 0.06 1.28 7.58 -2.38 -0.02 1.26 16 4 C -0.11 -1.29 4.75 30.59 0.15 -1.14 16 5 C -0.11 -1.98 5.36 30.59 0.16 -1.81 16 6 C 0.06 1.27 5.69 86.30 0.49 1.76 16 7 N -0.69 -21.55 6.12 -517.92 -3.17 -24.72 16 8 C 0.07 2.24 6.17 85.56 0.53 2.77 16 9 C 0.43 20.93 7.82 87.66 0.69 21.61 16 10 O -0.63 -35.33 15.78 -3.06 -0.05 -35.38 16 11 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 12 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 16 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 N -0.71 -9.54 4.43 -442.52 -1.96 -11.50 16 21 C 0.52 9.71 7.13 87.66 0.62 10.34 16 22 O -0.58 -15.92 15.63 -3.04 -0.05 -15.97 16 23 C -0.14 -2.03 2.73 -11.45 -0.03 -2.06 16 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 25 C -0.10 -1.61 4.62 30.71 0.14 -1.47 16 26 C -0.15 -1.72 6.14 30.68 0.19 -1.53 16 27 C 0.05 0.56 6.84 72.01 0.49 1.06 16 28 O -0.39 -5.69 10.77 -148.98 -1.60 -7.29 16 29 C 0.08 0.88 6.00 72.01 0.43 1.32 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.09 7.75 -2.38 -0.02 1.07 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.34 11.23 8.43 -89.70 -0.76 10.47 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.41 3.33 8.06 -92.71 -0.75 2.58 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.08 8.03 -2.39 -0.02 1.07 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.12 0.86 7.63 -2.38 -0.02 0.84 16 Total: -1.00 -75.51 421.69 -1.51 -77.02 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -1.31 Total: 40.11 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.94 Total: 13.07 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -6.47 Total: -116.63 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -1.70 Total: -58.64 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.51 -1.51 -77.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.274 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds