Wall clock time and date at job start Wed Apr 1 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 C 1.52997 * 109.47250 * 120.00041 * 2 1 3 5 5 C 1.53007 * 109.47290 * 184.99868 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99614 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46984 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99873 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99509 * 359.71860 * 12 11 9 14 14 C 1.38950 * 120.00048 * 179.72298 * 12 11 9 15 15 N 1.31413 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47025 * 59.99851 * 16 14 12 18 18 H 1.48498 * 109.46692 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46740 * 299.99493 * 16 14 12 20 20 N 1.46494 * 109.46953 * 240.00121 * 2 1 3 21 21 C 1.34777 * 120.00431 * 85.00005 * 20 2 1 22 22 O 1.21285 * 119.99411 * 0.02562 * 21 20 2 23 23 C 1.50697 * 120.00631 * 179.97438 * 21 20 2 24 24 H 1.09007 * 109.52223 * 300.12976 * 23 21 20 25 25 C 1.53178 * 109.52474 * 179.97438 * 23 21 20 26 26 C 1.53177 * 109.03692 * 183.11437 * 25 23 21 27 27 C 1.53094 * 109.16506 * 56.98061 * 26 25 23 28 28 O 1.42907 * 109.41673 * 302.39482 * 27 26 25 29 29 C 1.42906 * 114.09862 * 61.15020 * 28 27 26 30 30 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47382 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.47529 * 59.99442 * 1 2 3 33 33 H 1.09002 * 109.46945 * 64.99892 * 4 2 1 34 34 H 1.08996 * 109.47478 * 304.99794 * 4 2 1 35 35 H 1.08998 * 109.46615 * 60.00144 * 5 4 2 36 36 H 1.08996 * 109.46800 * 300.00341 * 5 4 2 37 37 H 1.09002 * 109.46945 * 60.00024 * 6 5 4 38 38 H 1.09000 * 109.47247 * 300.00386 * 6 5 4 39 39 H 1.00897 * 110.99725 * 56.05049 * 7 6 5 40 40 H 1.09004 * 109.47320 * 60.00702 * 8 7 6 41 41 H 1.09001 * 109.47291 * 299.99999 * 8 7 6 42 42 H 0.96996 * 119.99858 * 359.72084 * 11 9 8 43 43 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 44 44 H 0.97009 * 120.00309 * 264.99596 * 20 2 1 45 45 H 1.08996 * 109.54109 * 302.98109 * 25 23 21 46 46 H 1.09000 * 109.54129 * 63.16560 * 25 23 21 47 47 H 1.08999 * 109.52527 * 176.88552 * 26 25 23 48 48 H 1.09001 * 109.52184 * 297.01525 * 26 25 23 49 49 H 1.09004 * 109.47861 * 62.36830 * 27 26 25 50 50 H 1.08997 * 109.48552 * 182.41279 * 27 26 25 51 51 H 1.08994 * 109.48251 * 178.85882 * 29 28 27 52 52 H 1.09003 * 109.47757 * 58.82848 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5390 -1.2320 2.6240 8 6 6.0652 -1.9148 3.8134 9 6 7.5666 -1.7874 3.8427 10 8 8.1417 -1.1873 2.9593 11 7 8.2704 -2.3412 4.8498 12 6 9.6363 -2.2249 4.8767 13 1 10.1484 -1.6933 4.0883 14 6 10.3614 -2.7909 5.9181 15 7 9.7380 -3.4372 6.8775 16 14 12.2224 -2.6329 5.9542 17 1 12.5965 -1.1965 5.9957 18 1 12.7538 -3.3174 7.1601 19 1 12.7960 -3.2590 4.7359 20 7 2.0182 -0.6906 -1.1961 21 6 2.1469 -0.0183 -2.3572 22 8 1.8589 1.1586 -2.4114 23 6 2.6498 -0.7285 -3.5875 24 1 3.6483 -1.1226 -3.3981 25 6 2.7010 0.2546 -4.7611 26 6 3.1386 -0.4958 -6.0227 27 6 2.1724 -1.6556 -6.2781 28 8 2.1492 -2.5148 -5.1364 29 6 1.7025 -1.8793 -3.9369 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.8531 0.4370 1.3573 36 1 3.9994 -1.0728 0.4259 37 1 3.7865 -2.3853 2.5184 38 1 3.6403 -0.8760 3.4505 39 1 5.8348 -0.2676 2.6006 40 1 5.7904 -2.9690 3.7786 41 1 5.6448 -1.4590 4.7099 42 1 7.8103 -2.8183 5.5580 43 1 10.2443 -3.8327 7.6043 44 1 2.2490 -1.6318 -1.1526 45 1 1.7128 0.6867 -4.9181 46 1 3.4153 1.0481 -4.5411 47 1 3.1245 0.1843 -6.8744 48 1 4.1473 -0.8847 -5.8838 49 1 1.1718 -1.2623 -6.4574 50 1 2.5035 -2.2191 -7.1504 51 1 1.6949 -2.6039 -3.1228 52 1 0.6957 -1.4889 -4.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675862780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:43 Heat of formation + Delta-G solvation = -146.546422 kcal Electronic energy + Delta-G solvation = -29235.704212 eV Core-core repulsion = 25040.961312 eV Total energy + Delta-G solvation = -4194.742899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75861 -39.10652 -38.31368 -37.13805 -35.53037 -34.00010 -33.88979 -32.87335 -31.68768 -31.18811 -30.29914 -27.33770 -25.57059 -25.18133 -24.82376 -23.49542 -21.96765 -21.42191 -20.93591 -20.27478 -19.20397 -17.87593 -17.71486 -16.87197 -16.70763 -16.21779 -16.14190 -15.65435 -15.48612 -15.00312 -14.77911 -14.54582 -14.46253 -14.11016 -14.09376 -13.86102 -13.68258 -13.47544 -13.28116 -13.09686 -12.97237 -12.68615 -12.44190 -12.04548 -12.00462 -11.68043 -11.57099 -11.56063 -11.46869 -11.38919 -11.31799 -11.04855 -10.94971 -10.85056 -10.77355 -10.43945 -10.20970 -10.19120 -9.86907 -9.49733 -9.38515 -8.45830 -8.05124 -7.95498 -6.41344 -3.82222 2.31413 2.81213 3.20546 3.26008 3.30617 3.38336 3.91320 4.04509 4.15038 4.23774 4.33753 4.36693 4.48434 4.54795 4.66222 4.74425 4.80497 4.83137 4.92293 5.02621 5.10718 5.15308 5.20565 5.23816 5.25475 5.31018 5.33020 5.37181 5.41334 5.49573 5.52902 5.57838 5.65568 5.70863 5.73305 5.80214 5.86230 5.89092 5.98626 6.05093 6.16730 6.23795 6.28550 6.66092 7.17344 7.23839 7.55341 7.67023 7.91383 8.06626 8.61783 9.18148 9.54659 10.06346 10.76320 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001675 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.636850 B =16708.385486 C =18031.531096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.722 5.722 21 C 0.522 3.478 22 O -0.537 6.537 23 C -0.146 4.146 24 H 0.109 0.891 25 C -0.102 4.102 26 C -0.158 4.158 27 C 0.057 3.943 28 O -0.376 6.376 29 C 0.074 3.926 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.348 0.652 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.401 0.599 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.505 2.637 -18.710 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.374 5.374 21 C 0.308 3.692 22 O -0.414 6.414 23 C -0.168 4.168 24 H 0.127 0.873 25 C -0.140 4.140 26 C -0.195 4.195 27 C -0.020 4.020 28 O -0.294 6.294 29 C -0.004 4.004 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.168 0.832 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.236 0.764 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.114 0.886 51 H 0.116 0.884 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.078 3.067 -19.574 29.664 hybrid contribution 0.486 0.145 1.436 1.523 sum -21.592 3.213 -18.138 28.382 Atomic orbital electron populations 1.22172 0.95264 1.02113 1.02559 1.21008 0.93792 0.97754 0.83795 0.89306 1.21878 0.96320 1.01147 0.97050 1.21559 0.93960 1.01062 0.98942 1.21973 0.88306 1.00482 0.96297 1.60083 1.08039 1.21456 1.40716 1.21667 0.95001 1.00098 0.91423 1.19833 0.88130 0.84950 0.84532 1.90522 1.71162 1.46303 1.38787 1.41860 1.07391 1.48553 1.22241 1.19662 0.81553 1.33094 1.08650 0.87981 1.25266 1.00715 0.96576 0.95403 1.69605 1.36787 1.36030 1.11932 0.85908 0.82102 0.78573 0.77580 1.19929 1.20978 1.19868 1.46161 1.67410 1.14164 1.09708 1.20408 0.77223 0.87227 0.84328 1.90706 1.49671 1.15932 1.85052 1.22056 1.02582 0.97980 0.94189 0.87260 1.21396 1.03201 0.97038 0.92335 1.22236 1.00680 0.98093 0.98520 1.22660 0.98603 0.92066 0.88652 1.87984 1.87558 1.36704 1.17183 1.22483 0.95701 0.94038 0.88150 0.92420 0.91526 0.92234 0.91134 0.90274 0.91909 0.90873 0.91232 0.95675 0.83236 0.89664 0.93966 0.77462 0.91833 0.76417 0.91017 0.90519 0.90346 0.90661 0.93028 0.88562 0.88379 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.15 0.35 -0.77 16 2 C 0.14 1.09 2.57 -67.94 -0.17 0.92 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.13 -0.88 4.75 -26.73 -0.13 -1.01 16 5 C -0.12 -1.14 5.36 -26.73 -0.14 -1.28 16 6 C 0.06 0.69 5.68 -3.83 -0.02 0.66 16 7 N -0.67 -10.87 6.13 -115.05 -0.70 -11.57 16 8 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 9 C 0.44 10.54 7.82 -10.98 -0.09 10.45 16 10 O -0.58 -16.10 15.78 5.54 0.09 -16.02 16 11 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 12 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 N -0.72 -5.36 4.44 -53.81 -0.24 -5.60 16 21 C 0.52 4.93 7.12 -10.99 -0.08 4.86 16 22 O -0.54 -7.06 15.63 5.55 0.09 -6.98 16 23 C -0.15 -1.11 2.73 -91.63 -0.25 -1.36 16 24 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 25 C -0.10 -0.79 4.62 -26.55 -0.12 -0.92 16 26 C -0.16 -0.97 6.14 -26.59 -0.16 -1.13 16 27 C 0.06 0.35 6.84 37.21 0.25 0.61 16 28 O -0.38 -3.08 10.77 -35.23 -0.38 -3.46 16 29 C 0.07 0.49 6.01 37.21 0.22 0.71 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.40 2.19 8.09 -40.82 -0.33 1.86 16 45 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.10 0.50 7.66 -51.93 -0.40 0.10 16 52 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 421.74 15.07 6.36 6.36 Total: -1.00 -34.01 421.74 -9.05 -43.06 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -9.29 Total: 11.94 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.61 Total: 4.52 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.28 Total: -55.55 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.21 Total: -26.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.01 -9.05 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.487 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds