Wall clock time and date at job start Wed Apr 1 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 C 1.52997 * 109.47250 * 120.00041 * 2 1 3 5 5 C 1.53007 * 109.47290 * 184.99868 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99614 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46984 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99873 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99509 * 359.71860 * 12 11 9 14 14 C 1.38950 * 120.00048 * 179.72298 * 12 11 9 15 15 N 1.31413 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47025 * 59.99851 * 16 14 12 18 18 H 1.48498 * 109.46692 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46740 * 299.99493 * 16 14 12 20 20 N 1.46494 * 109.46953 * 240.00121 * 2 1 3 21 21 C 1.34777 * 120.00431 * 85.00005 * 20 2 1 22 22 O 1.21285 * 119.99411 * 0.02562 * 21 20 2 23 23 C 1.50697 * 120.00631 * 179.97438 * 21 20 2 24 24 H 1.09007 * 109.52223 * 300.12976 * 23 21 20 25 25 C 1.53178 * 109.52474 * 179.97438 * 23 21 20 26 26 C 1.53177 * 109.03692 * 183.11437 * 25 23 21 27 27 C 1.53094 * 109.16506 * 56.98061 * 26 25 23 28 28 O 1.42907 * 109.41673 * 302.39482 * 27 26 25 29 29 C 1.42906 * 114.09862 * 61.15020 * 28 27 26 30 30 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47382 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.47529 * 59.99442 * 1 2 3 33 33 H 1.09002 * 109.46945 * 64.99892 * 4 2 1 34 34 H 1.08996 * 109.47478 * 304.99794 * 4 2 1 35 35 H 1.08998 * 109.46615 * 60.00144 * 5 4 2 36 36 H 1.08996 * 109.46800 * 300.00341 * 5 4 2 37 37 H 1.09002 * 109.46945 * 60.00024 * 6 5 4 38 38 H 1.09000 * 109.47247 * 300.00386 * 6 5 4 39 39 H 1.00897 * 110.99725 * 56.05049 * 7 6 5 40 40 H 1.09004 * 109.47320 * 60.00702 * 8 7 6 41 41 H 1.09001 * 109.47291 * 299.99999 * 8 7 6 42 42 H 0.96996 * 119.99858 * 359.72084 * 11 9 8 43 43 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 44 44 H 0.97009 * 120.00309 * 264.99596 * 20 2 1 45 45 H 1.08996 * 109.54109 * 302.98109 * 25 23 21 46 46 H 1.09000 * 109.54129 * 63.16560 * 25 23 21 47 47 H 1.08999 * 109.52527 * 176.88552 * 26 25 23 48 48 H 1.09001 * 109.52184 * 297.01525 * 26 25 23 49 49 H 1.09004 * 109.47861 * 62.36830 * 27 26 25 50 50 H 1.08997 * 109.48552 * 182.41279 * 27 26 25 51 51 H 1.08994 * 109.48251 * 178.85882 * 29 28 27 52 52 H 1.09003 * 109.47757 * 58.82848 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5390 -1.2320 2.6240 8 6 6.0652 -1.9148 3.8134 9 6 7.5666 -1.7874 3.8427 10 8 8.1417 -1.1873 2.9593 11 7 8.2704 -2.3412 4.8498 12 6 9.6363 -2.2249 4.8767 13 1 10.1484 -1.6933 4.0883 14 6 10.3614 -2.7909 5.9181 15 7 9.7380 -3.4372 6.8775 16 14 12.2224 -2.6329 5.9542 17 1 12.5965 -1.1965 5.9957 18 1 12.7538 -3.3174 7.1601 19 1 12.7960 -3.2590 4.7359 20 7 2.0182 -0.6906 -1.1961 21 6 2.1469 -0.0183 -2.3572 22 8 1.8589 1.1586 -2.4114 23 6 2.6498 -0.7285 -3.5875 24 1 3.6483 -1.1226 -3.3981 25 6 2.7010 0.2546 -4.7611 26 6 3.1386 -0.4958 -6.0227 27 6 2.1724 -1.6556 -6.2781 28 8 2.1492 -2.5148 -5.1364 29 6 1.7025 -1.8793 -3.9369 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.8531 0.4370 1.3573 36 1 3.9994 -1.0728 0.4259 37 1 3.7865 -2.3853 2.5184 38 1 3.6403 -0.8760 3.4505 39 1 5.8348 -0.2676 2.6006 40 1 5.7904 -2.9690 3.7786 41 1 5.6448 -1.4590 4.7099 42 1 7.8103 -2.8183 5.5580 43 1 10.2443 -3.8327 7.6043 44 1 2.2490 -1.6318 -1.1526 45 1 1.7128 0.6867 -4.9181 46 1 3.4153 1.0481 -4.5411 47 1 3.1245 0.1843 -6.8744 48 1 4.1473 -0.8847 -5.8838 49 1 1.1718 -1.2623 -6.4574 50 1 2.5035 -2.2191 -7.1504 51 1 1.6949 -2.6039 -3.1228 52 1 0.6957 -1.4889 -4.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675862780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:42 Heat of formation + Delta-G solvation = -172.331509 kcal Electronic energy + Delta-G solvation = -29236.822337 eV Core-core repulsion = 25040.961312 eV Total energy + Delta-G solvation = -4195.861025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44483 -40.16951 -39.70704 -38.01857 -36.67145 -35.85661 -34.63716 -33.69244 -33.25895 -32.37301 -31.01435 -28.64880 -26.69582 -26.07415 -25.54452 -24.78893 -22.69499 -22.22942 -21.60628 -21.04857 -20.90221 -19.90667 -18.38747 -17.81688 -17.54385 -17.29099 -17.07920 -16.71579 -16.49045 -16.13090 -16.02578 -15.67972 -15.56776 -15.32116 -15.04937 -14.89990 -14.64717 -14.36952 -14.15892 -14.10531 -13.89166 -13.56398 -13.47528 -13.27717 -13.07205 -12.95697 -12.75987 -12.60758 -12.44481 -12.31556 -12.17024 -12.14663 -12.08394 -11.92433 -11.76317 -11.54065 -11.50481 -11.39348 -10.89565 -10.50133 -10.36170 -10.08536 -10.02651 -9.31404 -8.47273 -5.96290 1.39525 1.41458 1.52480 1.56993 2.04269 2.16867 2.28905 2.87989 2.92670 3.19739 3.50148 3.55510 3.72421 3.76875 3.82336 3.95794 4.06788 4.13351 4.14969 4.23816 4.30922 4.33708 4.41955 4.44195 4.52495 4.58610 4.60351 4.65497 4.69063 4.71449 4.78283 4.82747 4.88097 4.89726 4.93998 5.02535 5.07467 5.10347 5.26389 5.28385 5.31490 5.39655 5.41645 5.58335 5.90284 6.12764 6.14810 6.39730 6.53404 6.59450 7.11632 7.22660 7.55185 8.10767 8.69761 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001675 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.636850 B =16708.385486 C =18031.531096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.688 5.688 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.572 5.572 12 C -0.337 4.337 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.272 1.272 20 N -0.711 5.711 21 C 0.520 3.480 22 O -0.580 6.580 23 C -0.141 4.141 24 H 0.112 0.888 25 C -0.103 4.103 26 C -0.152 4.152 27 C 0.052 3.948 28 O -0.392 6.392 29 C 0.077 3.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.340 0.660 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.111 0.889 51 H 0.116 0.884 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.581 1.209 -18.296 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.320 5.320 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.466 4.466 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.197 1.197 20 N -0.363 5.363 21 C 0.307 3.693 22 O -0.460 6.460 23 C -0.163 4.163 24 H 0.130 0.870 25 C -0.141 4.141 26 C -0.190 4.190 27 C -0.024 4.024 28 O -0.311 6.311 29 C -0.001 4.001 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.250 0.750 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.129 0.871 51 H 0.134 0.866 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.187 1.592 -19.134 30.105 hybrid contribution 0.784 0.615 1.290 1.630 sum -22.403 2.207 -17.844 28.726 Atomic orbital electron populations 1.22105 0.94193 1.03011 1.02119 1.20985 0.94549 0.96613 0.84217 0.91949 1.21790 0.94013 1.02393 0.96885 1.21492 0.95860 0.99824 0.97758 1.22085 0.85402 1.01711 0.97556 1.60115 1.11031 1.20856 1.40033 1.21535 0.90118 1.01803 0.93225 1.20959 0.90761 0.83016 0.83005 1.90489 1.72879 1.47742 1.40138 1.41930 1.06861 1.49164 1.22998 1.19634 0.83115 1.34739 1.09122 0.90421 1.26046 1.04958 0.95653 0.94585 1.69662 1.38368 1.35839 1.12092 0.84986 0.76736 0.78595 0.77999 1.19762 1.19362 1.19726 1.46112 1.66426 1.14658 1.09131 1.20727 0.76598 0.86752 0.85213 1.90686 1.51743 1.17804 1.85752 1.22034 1.02896 0.98124 0.93249 0.87019 1.21377 1.02294 0.96959 0.93436 1.22208 1.00454 0.98243 0.98059 1.22812 0.98994 0.91985 0.88588 1.87962 1.87689 1.37561 1.17880 1.22543 0.95226 0.93911 0.88394 0.90767 0.90502 0.94187 0.89039 0.89047 0.93329 0.91830 0.89853 0.94276 0.84159 0.87619 0.91653 0.76904 0.91246 0.74978 0.91858 0.92105 0.89027 0.90982 0.92343 0.87134 0.86605 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.14 2.03 2.57 44.99 0.12 2.15 16 3 H 0.06 1.26 7.58 -2.39 -0.02 1.25 16 4 C -0.11 -1.29 4.75 30.60 0.15 -1.14 16 5 C -0.11 -1.99 5.36 30.60 0.16 -1.82 16 6 C 0.06 1.26 5.68 86.30 0.49 1.75 16 7 N -0.69 -21.45 6.13 -517.92 -3.17 -24.62 16 8 C 0.07 2.23 6.17 85.56 0.53 2.75 16 9 C 0.43 20.92 7.82 87.66 0.69 21.61 16 10 O -0.63 -35.33 15.78 -3.08 -0.05 -35.38 16 11 N -0.57 -29.57 5.29 -306.97 -1.62 -31.19 16 12 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 16 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 N -0.71 -9.90 4.44 -442.56 -1.96 -11.87 16 21 C 0.52 9.92 7.12 87.66 0.62 10.55 16 22 O -0.58 -15.96 15.63 -3.05 -0.05 -16.01 16 23 C -0.14 -2.13 2.73 -11.45 -0.03 -2.16 16 24 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 25 C -0.10 -1.64 4.62 30.71 0.14 -1.50 16 26 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 27 C 0.05 0.59 6.84 72.01 0.49 1.08 16 28 O -0.39 -5.93 10.77 -148.98 -1.60 -7.53 16 29 C 0.08 0.93 6.01 72.01 0.43 1.37 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.34 11.47 8.43 -89.70 -0.76 10.71 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.41 3.73 8.09 -92.70 -0.75 2.98 16 45 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.12 0.95 7.66 -2.39 -0.02 0.93 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -75.02 421.74 -1.52 -76.54 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -1.31 Total: 41.08 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.94 Total: 13.12 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.48 Total: -116.90 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.70 Total: -58.92 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.02 -1.52 -76.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.792 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds