Wall clock time and date at job start Wed Apr 1 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47533 * 2 1 4 4 C 1.53000 * 109.46914 * 120.00660 * 2 1 3 5 5 C 1.53000 * 109.47342 * 184.99798 * 4 2 1 6 6 C 1.52994 * 109.47418 * 179.97438 * 5 4 2 7 7 N 1.46904 * 109.47226 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99807 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46840 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99933 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99835 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00179 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99805 * 359.97438 * 12 11 9 14 14 C 1.38948 * 120.00492 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99583 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00270 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47098 * 59.99892 * 16 14 12 18 18 H 1.48504 * 109.47161 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47047 * 300.00005 * 16 14 12 20 20 N 1.46507 * 109.47050 * 239.99901 * 2 1 3 21 21 C 1.34772 * 119.99625 * 85.00441 * 20 2 1 22 22 O 1.21276 * 120.00305 * 359.97438 * 21 20 2 23 23 C 1.50706 * 119.99661 * 180.02562 * 21 20 2 24 24 H 1.09002 * 109.52449 * 59.99810 * 23 21 20 25 25 C 1.53179 * 109.57450 * 180.15574 * 23 21 20 26 26 C 1.53170 * 109.03827 * 176.91635 * 25 23 21 27 27 C 1.53092 * 109.16424 * 303.02003 * 26 25 23 28 28 O 1.42909 * 109.41369 * 57.60525 * 27 26 25 29 29 C 1.42900 * 114.10163 * 298.84292 * 28 27 26 30 30 H 1.08999 * 109.47117 * 299.99941 * 1 2 3 31 31 H 1.09008 * 109.46752 * 59.99751 * 1 2 3 32 32 H 1.08994 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46484 * 304.99265 * 4 2 1 34 34 H 1.08998 * 109.47644 * 64.98948 * 4 2 1 35 35 H 1.09001 * 109.47025 * 299.99876 * 5 4 2 36 36 H 1.09002 * 109.46887 * 59.99519 * 5 4 2 37 37 H 1.09001 * 109.47330 * 300.00190 * 6 5 4 38 38 H 1.09003 * 109.47478 * 59.99782 * 6 5 4 39 39 H 1.00896 * 110.99586 * 56.04752 * 7 6 5 40 40 H 1.08999 * 109.46868 * 299.99867 * 8 7 6 41 41 H 1.08999 * 109.47366 * 59.99638 * 8 7 6 42 42 H 0.97001 * 120.00232 * 359.97438 * 11 9 8 43 43 H 0.96998 * 119.99332 * 180.02562 * 15 14 12 44 44 H 0.97000 * 119.99611 * 265.00841 * 20 2 1 45 45 H 1.09005 * 109.54274 * 296.78586 * 25 23 21 46 46 H 1.09009 * 109.54120 * 57.04917 * 25 23 21 47 47 H 1.08998 * 109.52614 * 183.11927 * 26 25 23 48 48 H 1.08993 * 109.57458 * 62.95745 * 26 25 23 49 49 H 1.09001 * 109.48181 * 297.63099 * 27 26 25 50 50 H 1.08997 * 109.49472 * 177.59768 * 27 26 25 51 51 H 1.09001 * 109.47755 * 301.17703 * 29 28 27 52 52 H 1.08993 * 109.48391 * 181.13856 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3137 6 6 4.0747 -1.3344 2.5632 7 7 5.5387 -1.2303 2.6254 8 6 6.0649 -1.9132 3.8148 9 6 7.5661 -1.7848 3.8447 10 8 8.1411 -1.1839 2.9619 11 7 8.2699 -2.3385 4.8520 12 6 9.6356 -2.2221 4.8790 13 1 10.1477 -1.6871 4.0929 14 6 10.3612 -2.7925 5.9177 15 7 9.7382 -3.4440 6.8740 16 14 12.2221 -2.6346 5.9541 17 1 12.5962 -1.1983 6.0017 18 1 12.7541 -3.3242 7.1569 19 1 12.7955 -3.2552 4.7330 20 7 2.0184 -0.6907 -1.1962 21 6 2.1471 -0.0183 -2.3571 22 8 1.8583 1.1584 -2.4117 23 6 2.6489 -0.7289 -3.5877 24 1 1.9765 -1.5509 -3.8334 25 6 2.7053 0.2544 -4.7610 26 6 3.2889 -0.4598 -5.9838 27 6 4.6687 -1.0195 -5.6280 28 8 4.5495 -1.9020 -4.5104 29 6 4.0535 -1.2781 -3.3244 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -0.2618 2.1369 34 1 1.7515 -1.7716 1.2056 35 1 3.9994 -1.0730 0.4259 36 1 3.8532 0.4367 1.3574 37 1 3.6401 -0.8746 3.4507 38 1 3.7863 -2.3847 2.5199 39 1 5.8339 -0.2657 2.6016 40 1 5.6437 -1.4580 4.7112 41 1 5.7907 -2.9675 3.7796 42 1 7.8101 -2.8193 5.5579 43 1 10.2447 -3.8418 7.5993 44 1 2.2489 -1.6319 -1.1526 45 1 1.6995 0.6068 -4.9900 46 1 3.3385 1.1014 -4.4967 47 1 3.3841 0.2474 -6.8077 48 1 2.6298 -1.2762 -6.2790 49 1 5.3391 -0.1987 -5.3730 50 1 5.0708 -1.5656 -6.4813 51 1 4.7159 -0.4607 -3.0394 52 1 4.0121 -2.0105 -2.5183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675862781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:47 Heat of formation + Delta-G solvation = -146.430174 kcal Electronic energy + Delta-G solvation = -29472.531353 eV Core-core repulsion = 25277.793495 eV Total energy + Delta-G solvation = -4194.737858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73448 -39.05239 -38.31247 -37.13518 -35.52776 -33.95805 -33.88791 -32.85441 -31.67977 -31.18393 -30.26503 -27.33728 -25.50948 -25.17775 -24.77403 -23.49116 -21.95532 -21.42803 -20.91054 -20.24867 -19.20195 -17.87321 -17.70072 -16.84216 -16.66078 -16.18295 -16.11663 -15.64947 -15.41941 -14.87814 -14.82443 -14.53289 -14.45692 -14.23419 -14.05679 -13.88500 -13.59070 -13.40292 -13.27083 -13.05775 -12.92048 -12.72771 -12.45326 -12.02061 -11.99900 -11.68402 -11.56173 -11.53589 -11.44806 -11.36539 -11.30045 -11.04747 -10.94711 -10.79613 -10.77415 -10.43740 -10.20703 -10.14806 -9.82380 -9.49502 -9.38152 -8.45645 -8.05046 -7.95236 -6.41132 -3.81948 2.31504 2.81894 3.20756 3.26202 3.30833 3.48105 3.91535 4.04455 4.18112 4.24129 4.37231 4.39573 4.51661 4.55231 4.72138 4.74500 4.82619 4.85172 4.99170 5.02766 5.15438 5.20997 5.23783 5.25626 5.30084 5.32554 5.35697 5.38098 5.45985 5.49570 5.54849 5.58000 5.65370 5.69378 5.73408 5.80297 5.87926 5.89212 5.98825 6.04693 6.15963 6.23774 6.28540 6.76453 7.17559 7.23726 7.55614 7.67025 7.91549 8.06834 8.62010 9.18414 9.54914 10.06562 10.76556 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.001867 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.611398 B =14992.987963 C =16895.018470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.722 5.722 21 C 0.522 3.478 22 O -0.537 6.537 23 C -0.144 4.144 24 H 0.105 0.895 25 C -0.102 4.102 26 C -0.156 4.156 27 C 0.055 3.945 28 O -0.375 6.375 29 C 0.071 3.929 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.349 0.651 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.401 0.599 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.096 0.904 51 H 0.060 0.940 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 3.070 -18.255 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.375 5.375 21 C 0.308 3.692 22 O -0.414 6.414 23 C -0.166 4.166 24 H 0.123 0.877 25 C -0.140 4.140 26 C -0.194 4.194 27 C -0.021 4.021 28 O -0.293 6.293 29 C -0.006 4.006 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.236 0.764 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.114 0.886 51 H 0.078 0.922 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.398 3.502 -19.117 28.175 hybrid contribution 0.306 0.091 1.388 1.424 sum -20.092 3.593 -17.729 27.036 Atomic orbital electron populations 1.22171 0.95281 1.02111 1.02549 1.21012 0.93807 0.97734 0.83788 0.89299 1.21881 0.96320 1.01160 0.97056 1.21559 0.93949 1.01072 0.98925 1.21973 0.88315 1.00489 0.96289 1.60065 1.08050 1.21443 1.40736 1.21664 0.95004 1.00095 0.91414 1.19828 0.88132 0.84993 0.84486 1.90519 1.71158 1.46291 1.38773 1.41861 1.07408 1.48443 1.22349 1.19657 0.81552 1.32858 1.08849 0.87984 1.25268 1.00717 0.96567 0.95438 1.69608 1.36787 1.35826 1.12147 0.85909 0.82104 0.78564 0.77589 1.19927 1.20987 1.19861 1.46163 1.67404 1.14179 1.09709 1.20420 0.77309 0.87184 0.84305 1.90703 1.49857 1.15918 1.84883 1.22048 0.99867 1.00246 0.94443 0.87703 1.21404 1.02677 0.97228 0.92694 1.22227 0.97867 1.00928 0.98362 1.22664 0.95963 0.94177 0.89345 1.87987 1.85215 1.36356 1.19754 1.22525 0.91492 0.98500 0.88112 0.91536 0.92226 0.92441 0.90267 0.91129 0.90892 0.91899 0.95684 0.91220 0.83231 0.93979 0.89662 0.77464 0.91837 0.76418 0.90781 0.90802 0.90391 0.90943 0.92806 0.88588 0.92160 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.14 1.09 2.58 -67.93 -0.17 0.92 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 4 C -0.13 -0.87 4.75 -26.73 -0.13 -1.00 16 5 C -0.12 -1.11 5.36 -26.73 -0.14 -1.25 16 6 C 0.06 0.68 5.68 -3.82 -0.02 0.65 16 7 N -0.67 -10.76 6.13 -115.06 -0.70 -11.47 16 8 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 9 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 10 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 11 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 12 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 13 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 N -0.72 -5.36 4.43 -53.80 -0.24 -5.60 16 21 C 0.52 4.94 7.12 -10.98 -0.08 4.86 16 22 O -0.54 -7.07 15.64 5.56 0.09 -6.98 16 23 C -0.14 -1.10 2.72 -91.63 -0.25 -1.35 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.10 -0.80 4.62 -26.55 -0.12 -0.92 16 26 C -0.16 -0.98 6.14 -26.60 -0.16 -1.14 16 27 C 0.06 0.40 6.84 37.21 0.25 0.65 16 28 O -0.37 -3.57 10.77 -35.23 -0.38 -3.95 16 29 C 0.07 0.59 6.00 37.21 0.22 0.81 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 5.85 8.43 -39.29 -0.33 5.52 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.40 2.19 8.08 -40.82 -0.33 1.86 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.67 8.03 -51.92 -0.42 0.25 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.10 0.70 7.65 -51.93 -0.40 0.31 16 LS Contribution 421.73 15.07 6.36 6.36 Total: -1.00 -33.91 421.73 -9.05 -42.96 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -9.29 Total: 12.21 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.61 Total: 4.64 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.28 Total: -55.43 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.20 Total: -26.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.91 -9.05 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.467 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds