Wall clock time and date at job start Wed Apr 1 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47533 * 2 1 4 4 C 1.53000 * 109.46914 * 120.00660 * 2 1 3 5 5 C 1.53000 * 109.47342 * 184.99798 * 4 2 1 6 6 C 1.52994 * 109.47418 * 179.97438 * 5 4 2 7 7 N 1.46904 * 109.47226 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99807 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46840 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99933 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99835 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00179 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99805 * 359.97438 * 12 11 9 14 14 C 1.38948 * 120.00492 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99583 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00270 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47098 * 59.99892 * 16 14 12 18 18 H 1.48504 * 109.47161 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47047 * 300.00005 * 16 14 12 20 20 N 1.46507 * 109.47050 * 239.99901 * 2 1 3 21 21 C 1.34772 * 119.99625 * 85.00441 * 20 2 1 22 22 O 1.21276 * 120.00305 * 359.97438 * 21 20 2 23 23 C 1.50706 * 119.99661 * 180.02562 * 21 20 2 24 24 H 1.09002 * 109.52449 * 59.99810 * 23 21 20 25 25 C 1.53179 * 109.57450 * 180.15574 * 23 21 20 26 26 C 1.53170 * 109.03827 * 176.91635 * 25 23 21 27 27 C 1.53092 * 109.16424 * 303.02003 * 26 25 23 28 28 O 1.42909 * 109.41369 * 57.60525 * 27 26 25 29 29 C 1.42900 * 114.10163 * 298.84292 * 28 27 26 30 30 H 1.08999 * 109.47117 * 299.99941 * 1 2 3 31 31 H 1.09008 * 109.46752 * 59.99751 * 1 2 3 32 32 H 1.08994 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46484 * 304.99265 * 4 2 1 34 34 H 1.08998 * 109.47644 * 64.98948 * 4 2 1 35 35 H 1.09001 * 109.47025 * 299.99876 * 5 4 2 36 36 H 1.09002 * 109.46887 * 59.99519 * 5 4 2 37 37 H 1.09001 * 109.47330 * 300.00190 * 6 5 4 38 38 H 1.09003 * 109.47478 * 59.99782 * 6 5 4 39 39 H 1.00896 * 110.99586 * 56.04752 * 7 6 5 40 40 H 1.08999 * 109.46868 * 299.99867 * 8 7 6 41 41 H 1.08999 * 109.47366 * 59.99638 * 8 7 6 42 42 H 0.97001 * 120.00232 * 359.97438 * 11 9 8 43 43 H 0.96998 * 119.99332 * 180.02562 * 15 14 12 44 44 H 0.97000 * 119.99611 * 265.00841 * 20 2 1 45 45 H 1.09005 * 109.54274 * 296.78586 * 25 23 21 46 46 H 1.09009 * 109.54120 * 57.04917 * 25 23 21 47 47 H 1.08998 * 109.52614 * 183.11927 * 26 25 23 48 48 H 1.08993 * 109.57458 * 62.95745 * 26 25 23 49 49 H 1.09001 * 109.48181 * 297.63099 * 27 26 25 50 50 H 1.08997 * 109.49472 * 177.59768 * 27 26 25 51 51 H 1.09001 * 109.47755 * 301.17703 * 29 28 27 52 52 H 1.08993 * 109.48391 * 181.13856 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3137 6 6 4.0747 -1.3344 2.5632 7 7 5.5387 -1.2303 2.6254 8 6 6.0649 -1.9132 3.8148 9 6 7.5661 -1.7848 3.8447 10 8 8.1411 -1.1839 2.9619 11 7 8.2699 -2.3385 4.8520 12 6 9.6356 -2.2221 4.8790 13 1 10.1477 -1.6871 4.0929 14 6 10.3612 -2.7925 5.9177 15 7 9.7382 -3.4440 6.8740 16 14 12.2221 -2.6346 5.9541 17 1 12.5962 -1.1983 6.0017 18 1 12.7541 -3.3242 7.1569 19 1 12.7955 -3.2552 4.7330 20 7 2.0184 -0.6907 -1.1962 21 6 2.1471 -0.0183 -2.3571 22 8 1.8583 1.1584 -2.4117 23 6 2.6489 -0.7289 -3.5877 24 1 1.9765 -1.5509 -3.8334 25 6 2.7053 0.2544 -4.7610 26 6 3.2889 -0.4598 -5.9838 27 6 4.6687 -1.0195 -5.6280 28 8 4.5495 -1.9020 -4.5104 29 6 4.0535 -1.2781 -3.3244 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -0.2618 2.1369 34 1 1.7515 -1.7716 1.2056 35 1 3.9994 -1.0730 0.4259 36 1 3.8532 0.4367 1.3574 37 1 3.6401 -0.8746 3.4507 38 1 3.7863 -2.3847 2.5199 39 1 5.8339 -0.2657 2.6016 40 1 5.6437 -1.4580 4.7112 41 1 5.7907 -2.9675 3.7796 42 1 7.8101 -2.8193 5.5579 43 1 10.2447 -3.8418 7.5993 44 1 2.2489 -1.6319 -1.1526 45 1 1.6995 0.6068 -4.9900 46 1 3.3385 1.1014 -4.4967 47 1 3.3841 0.2474 -6.8077 48 1 2.6298 -1.2762 -6.2790 49 1 5.3391 -0.1987 -5.3730 50 1 5.0708 -1.5656 -6.4813 51 1 4.7159 -0.4607 -3.0394 52 1 4.0121 -2.0105 -2.5183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675862781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:46 Heat of formation + Delta-G solvation = -172.128874 kcal Electronic energy + Delta-G solvation = -29473.645732 eV Core-core repulsion = 25277.793495 eV Total energy + Delta-G solvation = -4195.852238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44648 -40.16463 -39.71175 -38.01658 -36.66595 -35.85201 -34.63656 -33.68356 -33.25482 -32.39709 -30.99595 -28.64473 -26.69286 -26.07585 -25.56899 -24.77922 -22.69506 -22.23017 -21.58973 -21.04847 -20.88992 -19.90197 -18.39634 -17.81137 -17.53746 -17.31481 -17.07103 -16.72973 -16.48568 -16.11937 -16.01098 -15.66545 -15.48237 -15.36966 -15.09592 -14.95704 -14.66682 -14.31243 -14.19561 -14.02944 -13.88147 -13.51242 -13.50167 -13.30042 -13.08564 -12.96242 -12.75608 -12.61945 -12.44083 -12.31143 -12.16966 -12.14416 -12.07759 -11.91887 -11.76447 -11.53777 -11.50082 -11.40032 -10.88904 -10.51024 -10.35518 -10.08204 -10.02228 -9.30470 -8.46976 -5.95857 1.39721 1.41604 1.52602 1.56627 2.04799 2.17156 2.29133 2.86990 2.93157 3.20135 3.50540 3.55721 3.73264 3.75071 3.82299 3.95970 4.06588 4.12883 4.15071 4.24068 4.30948 4.33869 4.41996 4.44685 4.53116 4.58822 4.59858 4.65898 4.71068 4.71638 4.78960 4.83132 4.88897 4.89336 4.94174 5.02528 5.07554 5.08275 5.26560 5.29007 5.31083 5.40005 5.42058 5.58393 5.90768 6.13243 6.13822 6.40679 6.53551 6.59867 7.12069 7.22763 7.55709 8.11257 8.70098 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.001867 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.611398 B =14992.987963 C =16895.018470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.063 0.937 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.688 5.688 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.272 1.272 20 N -0.711 5.711 21 C 0.520 3.480 22 O -0.580 6.580 23 C -0.136 4.136 24 H 0.124 0.876 25 C -0.103 4.103 26 C -0.148 4.148 27 C 0.048 3.952 28 O -0.392 6.392 29 C 0.072 3.928 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.341 0.659 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.049 0.951 50 H 0.112 0.888 51 H 0.044 0.956 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.976 1.656 -17.973 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.320 5.320 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.197 1.197 20 N -0.363 5.363 21 C 0.307 3.693 22 O -0.459 6.459 23 C -0.157 4.157 24 H 0.142 0.858 25 C -0.141 4.141 26 C -0.185 4.185 27 C -0.028 4.028 28 O -0.310 6.310 29 C -0.005 4.005 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.250 0.750 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.067 0.933 50 H 0.130 0.870 51 H 0.063 0.937 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.580 2.042 -18.810 28.700 hybrid contribution 0.634 0.552 1.282 1.533 sum -20.946 2.595 -17.529 27.436 Atomic orbital electron populations 1.22107 0.94322 1.02927 1.02102 1.20989 0.94474 0.96655 0.84234 0.91853 1.21790 0.94103 1.02354 0.96848 1.21494 0.95765 0.99879 0.97798 1.22085 0.85411 1.01712 0.97559 1.60097 1.11032 1.20844 1.40010 1.21531 0.90113 1.01797 0.93232 1.20957 0.90768 0.83044 0.82953 1.90487 1.72873 1.47704 1.40109 1.41933 1.06875 1.49072 1.23120 1.19625 0.83115 1.34457 1.09309 0.90426 1.26050 1.04957 0.95670 0.94635 1.69665 1.38359 1.35664 1.12311 0.84988 0.76751 0.78600 0.77994 1.19737 1.19389 1.19727 1.46115 1.66409 1.14684 1.09138 1.20738 0.76708 0.86711 0.85185 1.90685 1.51910 1.17768 1.85579 1.22001 0.99795 1.00410 0.93499 0.85814 1.21394 1.02170 0.96940 0.93615 1.22181 0.97224 1.01242 0.97888 1.22845 0.96592 0.94141 0.89244 1.87960 1.85386 1.37258 1.20423 1.22534 0.91346 0.98316 0.88302 0.90478 0.94227 0.90904 0.89077 0.89093 0.91661 0.93280 0.94341 0.89857 0.84142 0.91688 0.87632 0.76912 0.91260 0.74973 0.91133 0.92673 0.89017 0.90092 0.93267 0.87036 0.93730 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 71.98 0.68 -1.28 16 2 C 0.14 2.03 2.58 44.99 0.12 2.15 16 3 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 4 C -0.11 -1.28 4.75 30.59 0.15 -1.13 16 5 C -0.11 -1.94 5.36 30.59 0.16 -1.78 16 6 C 0.06 1.24 5.68 86.30 0.49 1.73 16 7 N -0.69 -21.23 6.13 -517.93 -3.17 -24.41 16 8 C 0.07 2.22 6.17 85.56 0.53 2.75 16 9 C 0.44 20.88 7.82 87.66 0.69 21.57 16 10 O -0.63 -35.18 15.78 -3.04 -0.05 -35.23 16 11 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 12 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 16 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 N -0.71 -9.87 4.43 -442.52 -1.96 -11.83 16 21 C 0.52 9.85 7.12 87.66 0.62 10.47 16 22 O -0.58 -15.88 15.64 -3.02 -0.05 -15.92 16 23 C -0.14 -2.01 2.72 -11.45 -0.03 -2.04 16 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 25 C -0.10 -1.62 4.62 30.71 0.14 -1.48 16 26 C -0.15 -1.71 6.14 30.68 0.19 -1.52 16 27 C 0.05 0.66 6.84 72.01 0.49 1.16 16 28 O -0.39 -7.18 10.77 -148.98 -1.60 -8.79 16 29 C 0.07 1.17 6.00 72.01 0.43 1.60 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.34 11.37 8.43 -89.70 -0.76 10.62 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 43 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.41 3.72 8.08 -92.71 -0.75 2.97 16 45 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.05 1.06 8.03 -2.38 -0.02 1.04 16 47 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.11 1.47 7.65 -2.39 -0.02 1.45 16 Total: -1.00 -74.87 421.73 -1.52 -76.39 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -1.31 Total: 41.59 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.94 Total: 13.56 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -6.47 Total: -116.71 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.70 Total: -59.94 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.87 -1.52 -76.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.737 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds