Wall clock time and date at job start Wed Apr 1 2020 01:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46845 * 2 1 4 4 O 1.42898 * 109.47289 * 120.00153 * 2 1 3 5 5 C 1.42897 * 114.00082 * 150.00068 * 4 2 1 6 6 C 1.52995 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.50711 * 109.46980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99638 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.65171 * 359.97367 * 9 7 6 11 11 C 1.54912 * 104.83229 * 155.91153 * 10 9 7 12 12 C 1.55156 * 101.57907 * 37.01106 * 11 10 9 13 13 H 1.08993 * 110.72028 * 83.04206 * 12 11 10 14 14 N 1.46903 * 110.71850 * 206.13371 * 12 11 10 15 15 C 1.46896 * 110.99955 * 271.16036 * 14 12 11 16 16 C 1.50700 * 109.46942 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99808 * 23 21 19 25 25 H 1.48504 * 109.46757 * 209.99794 * 23 21 19 26 26 H 1.48492 * 109.47185 * 329.99590 * 23 21 19 27 27 C 1.47317 * 125.61259 * 180.20350 * 9 7 6 28 28 H 1.09004 * 110.06810 * 61.67615 * 27 9 7 29 29 C 1.52997 * 109.85142 * 300.41694 * 27 9 7 30 30 H 1.08994 * 109.46961 * 299.99771 * 1 2 3 31 31 H 1.08996 * 109.47235 * 59.99613 * 1 2 3 32 32 H 1.08999 * 109.46418 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47367 * 240.00516 * 2 1 3 34 34 H 1.08994 * 109.47184 * 300.00629 * 3 2 1 35 35 H 1.09007 * 109.46829 * 60.00325 * 3 2 1 36 36 H 1.08997 * 109.46976 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47115 * 59.99898 * 5 4 2 38 38 H 1.09002 * 109.47176 * 300.00510 * 5 4 2 39 39 H 1.08997 * 109.46812 * 60.00562 * 6 5 4 40 40 H 1.08993 * 109.47268 * 299.99819 * 6 5 4 41 41 H 1.09000 * 110.36474 * 37.07029 * 10 9 7 42 42 H 1.09001 * 110.36760 * 274.74825 * 10 9 7 43 43 H 1.09003 * 111.00074 * 278.94093 * 11 10 9 44 44 H 1.09000 * 111.00393 * 155.08555 * 11 10 9 45 45 H 1.00907 * 111.00029 * 35.11549 * 14 12 11 46 46 H 1.08994 * 109.47346 * 60.00149 * 15 14 12 47 47 H 1.08998 * 109.47279 * 299.99821 * 15 14 12 48 48 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 49 49 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.47014 * 302.39512 * 29 27 9 51 51 H 1.08996 * 109.47126 * 62.39669 * 29 27 9 52 52 H 1.08997 * 109.47598 * 182.39595 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9886 6 6 3.6762 -2.0080 2.2944 7 6 5.0044 -2.6949 2.1063 8 8 5.5676 -2.6424 1.0334 9 7 5.5661 -3.3676 3.1302 10 6 4.9938 -3.5106 4.4812 11 6 5.6332 -4.8028 5.0480 12 6 7.0718 -4.7163 4.4734 13 1 7.6988 -4.0799 5.0977 14 7 7.6608 -6.0557 4.3432 15 6 8.3509 -6.4497 5.5787 16 6 8.9404 -7.8261 5.4078 17 8 8.7991 -8.4206 4.3600 18 7 9.6246 -8.3965 6.4192 19 6 10.1613 -9.6485 6.2635 20 1 10.0354 -10.1778 5.3306 21 6 10.8617 -10.2389 7.3083 22 7 11.0143 -9.5951 8.4437 23 14 11.5863 -11.9479 7.0989 24 1 12.9674 -11.8378 6.5643 25 1 11.6180 -12.6366 8.4142 26 1 10.7496 -12.7276 6.1518 27 6 6.8562 -4.0774 3.0852 28 1 7.6621 -3.3753 2.8711 29 6 6.8126 -5.1669 2.0120 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 3.1300 1.4426 0.0005 37 1 4.0201 -0.5873 0.7124 38 1 3.1810 -2.0706 0.1985 39 1 2.9223 -2.7452 2.5709 40 1 3.7614 -1.2616 3.0841 41 1 3.9104 -3.6166 4.4250 42 1 5.2603 -2.6530 5.0989 43 1 5.1173 -5.6888 4.6779 44 1 5.6462 -4.7867 6.1378 45 1 6.9603 -6.7356 4.0877 46 1 7.6399 -6.4594 6.4047 47 1 9.1473 -5.7371 5.7931 48 1 9.7373 -7.9213 7.2573 49 1 11.5036 -10.0072 9.1729 50 1 5.9922 -5.8527 2.2236 51 1 6.6603 -4.7086 1.0349 52 1 7.7543 -5.7158 2.0129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676626361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:20 Heat of formation + Delta-G solvation = -144.472167 kcal Electronic energy + Delta-G solvation = -29553.643891 eV Core-core repulsion = 25358.990938 eV Total energy + Delta-G solvation = -4194.652953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44599 -40.16336 -39.49754 -38.81265 -36.17406 -35.53386 -34.34900 -33.26062 -32.61597 -31.86125 -30.99677 -28.20726 -28.09635 -26.50824 -25.73876 -24.77048 -23.49885 -22.28266 -21.24263 -21.08266 -19.91453 -19.87337 -18.54840 -17.79064 -17.54977 -17.15308 -17.05887 -16.57020 -16.37926 -16.27425 -15.89213 -15.76075 -15.47646 -15.24165 -14.66284 -14.59146 -14.37899 -14.14628 -13.92426 -13.76797 -13.58645 -13.49122 -13.42269 -13.27005 -13.12340 -13.07166 -12.96495 -12.77867 -12.69147 -12.49276 -12.40375 -12.36271 -12.13412 -12.11748 -11.82104 -11.68089 -11.61307 -11.49069 -10.88700 -10.57265 -10.31973 -9.99204 -9.70031 -9.25681 -8.45446 -5.93604 1.38634 1.42688 1.54748 1.57170 1.76223 2.08496 2.30277 2.70816 2.94092 3.22439 3.41390 3.51590 3.67198 3.80503 3.92445 3.99205 4.06793 4.13470 4.16618 4.18277 4.29116 4.33681 4.36599 4.43822 4.47943 4.54292 4.62646 4.63655 4.70742 4.73902 4.76491 4.77878 4.83054 4.90944 4.92398 4.97536 5.01573 5.09600 5.12423 5.27857 5.32895 5.39614 5.40180 5.42624 5.91386 6.12662 6.22786 6.37752 6.50716 6.62518 7.10251 7.14946 7.59210 8.14979 8.71770 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.001539 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.743239 B =18193.709036 C =18401.138149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.395 6.395 5 C 0.081 3.919 6 C -0.123 4.123 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.160 4.160 12 C 0.085 3.915 13 H 0.111 0.889 14 N -0.670 5.670 15 C 0.068 3.932 16 C 0.437 3.563 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.145 3.855 28 H 0.067 0.933 29 C -0.141 4.141 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.347 0.653 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.048 0.952 51 H 0.042 0.958 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 21.980 -6.429 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.315 6.315 5 C 0.004 3.996 6 C -0.163 4.163 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.347 5.347 10 C -0.021 4.021 11 C -0.199 4.199 12 C -0.025 4.025 13 H 0.129 0.871 14 N -0.302 5.302 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C 0.041 3.959 28 H 0.085 0.915 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.167 0.833 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.431 21.811 -7.685 30.205 hybrid contribution 0.270 -1.044 0.515 1.195 sum -19.161 20.767 -7.170 29.152 Atomic orbital electron populations 1.21868 0.92342 1.02805 1.03355 1.22301 0.95929 0.92783 0.87545 1.22288 1.01168 0.96270 1.03338 1.87819 1.36410 1.70322 1.36967 1.22043 0.85418 0.95499 0.96623 1.21401 0.93382 1.01661 0.99843 1.20569 0.87230 0.78042 0.82361 1.90700 1.65634 1.62928 1.27193 1.48732 1.21702 1.51548 1.12732 1.22547 0.99795 0.98360 0.81402 1.23548 0.95457 0.98123 1.02810 1.22634 0.95079 0.90522 0.94304 0.87140 1.59979 1.34293 1.03447 1.32461 1.21549 0.99443 0.92993 0.92435 1.20964 0.82957 0.89583 0.84064 1.90506 1.64493 1.66700 1.29446 1.41916 1.48004 1.16316 1.14797 1.19648 1.32119 0.93924 1.00688 0.90505 1.25971 0.97369 1.03321 0.94378 1.69664 1.42125 1.39915 1.04273 0.84974 0.78449 0.77366 0.77833 1.19830 1.19487 1.19901 1.21449 0.85260 0.93191 0.96019 0.91508 1.21773 1.02344 0.97910 0.97868 0.91798 0.89551 0.92297 0.92203 0.90092 0.91768 0.93228 0.93436 0.93648 0.86424 0.86050 0.88188 0.88566 0.90992 0.87392 0.83253 0.90708 0.87592 0.76886 0.91339 0.93334 0.93934 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.56 71.98 0.69 -0.79 16 2 C 0.07 0.97 3.34 30.60 0.10 1.07 16 3 C -0.17 -1.98 9.53 71.98 0.69 -1.29 16 4 O -0.40 -6.77 9.99 -148.98 -1.49 -8.26 16 5 C 0.08 1.45 5.04 71.98 0.36 1.81 16 6 C -0.12 -1.81 5.08 29.85 0.15 -1.66 16 7 C 0.53 11.58 7.63 87.66 0.67 12.24 16 8 O -0.58 -17.93 14.89 -3.04 -0.05 -17.97 16 9 N -0.61 -11.73 3.09 -787.33 -2.43 -14.16 16 10 C 0.10 1.13 6.69 86.86 0.58 1.72 16 11 C -0.16 -2.24 6.67 31.99 0.21 -2.03 16 12 C 0.09 1.71 3.11 46.10 0.14 1.86 16 13 H 0.11 1.90 7.86 -2.39 -0.02 1.88 16 14 N -0.67 -19.10 4.44 -489.47 -2.17 -21.28 16 15 C 0.07 2.09 6.04 85.56 0.52 2.60 16 16 C 0.44 19.97 7.82 87.66 0.69 20.66 16 17 O -0.62 -33.99 15.78 -3.07 -0.05 -34.04 16 18 N -0.57 -28.56 5.29 -306.98 -1.62 -30.18 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.55 5.50 84.92 0.47 -0.09 16 22 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 23 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.14 3.39 3.50 45.28 0.16 3.55 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 C -0.14 -4.00 8.22 71.98 0.59 -3.41 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.81 7.79 -2.39 -0.02 0.79 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.05 0.64 7.87 -2.39 -0.02 0.63 16 37 H 0.05 0.92 7.83 -2.38 -0.02 0.90 16 38 H 0.05 0.90 8.04 -2.39 -0.02 0.89 16 39 H 0.12 1.35 7.85 -2.39 -0.02 1.33 16 40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 0.74 7.48 -2.39 -0.02 0.72 16 42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 1.17 7.79 -2.39 -0.02 1.16 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.35 10.72 7.36 -89.69 -0.66 10.06 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 48 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 49 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 50 H 0.05 1.34 7.93 -2.39 -0.02 1.32 16 51 H 0.04 1.34 6.77 -2.39 -0.02 1.32 16 52 H 0.07 2.18 7.40 -2.39 -0.02 2.16 16 Total: -1.00 -73.15 419.63 0.86 -72.30 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.48 Total: 39.10 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.83 Total: 18.28 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.94 Total: -114.07 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: -1.58 Total: -60.27 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.15 0.86 -72.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676626361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.175 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds