Wall clock time and date at job start Wed Apr 1 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 5 5 C 1.42898 * 113.99615 * 150.00204 * 4 2 1 6 6 C 1.52999 * 109.46900 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47409 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99659 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00487 * 179.97438 * 7 6 5 10 10 C 1.47429 * 125.64618 * 0.02861 * 9 7 6 11 11 C 1.54907 * 104.83348 * 204.08788 * 10 9 7 12 12 C 1.55158 * 101.58314 * 322.99483 * 11 10 9 13 13 H 1.09007 * 110.71590 * 276.95852 * 12 11 10 14 14 N 1.46898 * 110.72491 * 153.86373 * 12 11 10 15 15 C 1.46901 * 110.99901 * 86.44784 * 14 12 11 16 16 C 1.50702 * 109.46913 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99995 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99815 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99783 * 180.02562 * 18 16 15 20 20 H 1.07993 * 120.00048 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99846 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46934 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47175 * 120.00010 * 23 21 19 26 26 H 1.48495 * 109.47329 * 240.00089 * 23 21 19 27 27 C 1.47021 * 125.65118 * 179.71830 * 9 7 6 28 28 H 1.08999 * 109.88165 * 59.56506 * 27 9 7 29 29 C 1.52996 * 109.88340 * 298.39788 * 27 9 7 30 30 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 32 32 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 34 34 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 35 35 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 36 36 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 37 37 H 1.09007 * 109.47325 * 300.00090 * 5 4 2 38 38 H 1.09001 * 109.47659 * 60.00215 * 5 4 2 39 39 H 1.08997 * 109.47353 * 300.00157 * 6 5 4 40 40 H 1.09009 * 109.47187 * 60.00209 * 6 5 4 41 41 H 1.08993 * 110.36703 * 322.92956 * 10 9 7 42 42 H 1.09004 * 110.36293 * 85.25047 * 10 9 7 43 43 H 1.09004 * 111.00141 * 81.06319 * 11 10 9 44 44 H 1.09000 * 111.00799 * 204.88239 * 11 10 9 45 45 H 1.00895 * 111.00461 * 210.40821 * 14 12 11 46 46 H 1.08998 * 109.47228 * 300.00540 * 15 14 12 47 47 H 1.09000 * 109.46920 * 60.00402 * 15 14 12 48 48 H 0.96998 * 120.00511 * 359.97438 * 18 16 15 49 49 H 0.96998 * 120.00062 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47281 * 61.45184 * 29 27 9 51 51 H 1.08997 * 109.47319 * 181.45578 * 29 27 9 52 52 H 1.09002 * 109.47461 * 301.45587 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9887 6 6 3.6755 -2.0089 2.2943 7 6 5.0037 -2.6958 2.1063 8 8 5.5674 -2.6426 1.0338 9 7 5.5655 -3.3683 3.1302 10 6 4.9925 -3.5122 4.4810 11 6 6.2087 -3.7854 5.4007 12 6 7.0957 -4.6736 4.4886 13 1 6.7733 -5.7140 4.5324 14 7 8.5109 -4.5538 4.8637 15 6 8.8533 -5.4986 5.9352 16 6 10.3093 -5.3462 6.2929 17 8 10.9942 -4.5305 5.7126 18 7 10.8504 -6.1164 7.2574 19 6 12.1749 -5.9774 7.5832 20 1 12.7847 -5.2511 7.0665 21 6 12.7327 -6.7711 8.5780 22 7 11.9905 -7.6546 9.2071 23 14 14.5374 -6.5823 9.0214 24 1 15.1475 -5.5267 8.1736 25 1 14.6585 -6.1998 10.4511 26 1 15.2408 -7.8699 8.7922 27 6 6.8481 -4.0854 3.0834 28 1 7.6503 -3.3936 2.8266 29 6 6.7773 -5.2114 2.0500 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 3.1810 -2.0706 0.1987 38 1 4.0200 -0.5873 0.7125 39 1 3.7604 -1.2630 3.0846 40 1 2.9214 -2.7462 2.5701 41 1 4.4899 -2.5924 4.7798 42 1 4.2980 -4.3519 4.5110 43 1 6.7196 -2.8577 5.6586 44 1 5.9066 -4.3252 6.2981 45 1 9.1097 -4.6835 4.0622 46 1 8.2404 -5.2910 6.8123 47 1 8.6671 -6.5171 5.5946 48 1 10.3027 -6.7685 7.7217 49 1 12.3799 -8.2089 9.9013 50 1 6.5904 -4.7877 1.0632 51 1 7.7223 -5.7545 2.0392 52 1 5.9688 -5.8941 2.3113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676626369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:24 Heat of formation + Delta-G solvation = -125.361147 kcal Electronic energy + Delta-G solvation = -29444.197026 eV Core-core repulsion = 25250.372789 eV Total energy + Delta-G solvation = -4193.824237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56146 -38.90775 -38.38149 -37.72261 -34.78983 -33.84648 -33.70629 -31.95575 -31.26531 -31.13132 -30.14833 -27.65184 -26.99993 -25.12018 -24.50403 -23.65935 -22.44787 -21.73056 -20.59712 -19.43800 -18.93143 -17.90411 -17.67690 -16.95947 -16.46077 -16.26349 -16.14593 -15.34143 -15.29630 -15.10572 -14.71377 -14.49791 -14.16719 -13.91675 -13.83230 -13.66054 -13.37179 -13.28646 -13.18749 -12.93055 -12.78410 -12.65593 -12.45322 -12.30010 -12.13186 -11.88559 -11.76966 -11.73862 -11.59457 -11.53636 -11.39842 -11.14529 -11.06201 -11.00673 -10.75154 -10.35382 -10.24142 -10.00855 -9.92383 -9.53814 -8.87824 -8.50530 -8.16181 -7.98201 -6.43684 -3.84439 2.40185 2.53128 3.15315 3.26213 3.33405 3.35891 3.88212 4.02660 4.18111 4.27452 4.41341 4.43086 4.54610 4.59027 4.69512 4.74755 4.83406 4.93030 4.98330 5.07303 5.11399 5.17512 5.18732 5.21580 5.26175 5.28546 5.35420 5.37766 5.40706 5.43686 5.46885 5.52455 5.55924 5.73105 5.75336 5.80614 5.81026 5.89510 5.94404 6.04175 6.09258 6.18449 6.25792 6.85954 7.14108 7.28085 7.53909 7.55162 7.92381 8.04572 8.59009 9.16210 9.52084 10.03320 10.74059 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034160 B = 0.001535 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.470538 B =18231.654565 C =18285.479926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.135 4.135 7 C 0.534 3.466 8 O -0.541 6.541 9 N -0.610 5.610 10 C 0.098 3.902 11 C -0.125 4.125 12 C 0.078 3.922 13 H 0.060 0.940 14 N -0.656 5.656 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.135 3.865 28 H 0.089 0.911 29 C -0.164 4.164 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.352 0.648 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 8.937 -13.332 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.174 4.174 7 C 0.323 3.677 8 O -0.418 6.418 9 N -0.345 5.345 10 C -0.026 4.026 11 C -0.163 4.163 12 C -0.033 4.033 13 H 0.078 0.922 14 N -0.290 5.290 15 C -0.081 4.081 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.031 3.969 28 H 0.107 0.893 29 C -0.222 4.222 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.173 0.827 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.822 9.948 -13.614 29.186 hybrid contribution 0.691 -1.301 0.087 1.475 sum -23.131 8.647 -13.528 28.157 Atomic orbital electron populations 1.21868 0.93559 1.02713 1.02548 1.22074 0.94912 0.92480 0.88078 1.22310 1.01785 0.96707 1.02593 1.87845 1.36640 1.70158 1.35989 1.22142 0.85493 0.95990 0.96252 1.21445 0.94879 1.01210 0.99905 1.20020 0.86568 0.78246 0.82914 1.90713 1.64314 1.61300 1.25514 1.48464 1.22138 1.52015 1.11833 1.22433 0.96816 1.01838 0.81480 1.22886 0.94409 1.01726 0.97322 1.22615 0.90301 0.97803 0.92598 0.92178 1.60144 1.01468 1.54126 1.13242 1.21710 0.96742 0.93813 0.95813 1.19778 0.88410 0.85089 0.84177 1.90535 1.62629 1.38330 1.55135 1.41860 1.10998 1.34339 1.32788 1.19763 0.85599 1.19824 1.17697 0.87845 1.25260 1.00329 0.95890 0.96419 1.69619 1.36657 1.22909 1.25109 0.85802 0.82016 0.78229 0.78324 1.19197 1.20737 1.20770 1.21648 0.86196 0.93994 0.95028 0.89349 1.22162 1.02177 0.97774 1.00071 0.91751 0.91241 0.91995 0.92118 0.91639 0.91723 0.92328 0.92478 0.92402 0.88013 0.88131 0.90199 0.91140 0.89117 0.89806 0.82697 0.89490 0.93700 0.77471 0.91922 0.91025 0.91480 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.18 -1.13 9.53 37.16 0.35 -0.77 16 4 O -0.39 -3.51 9.99 -35.23 -0.35 -3.86 16 5 C 0.08 0.71 5.04 37.16 0.19 0.90 16 6 C -0.13 -1.12 5.08 -27.88 -0.14 -1.26 16 7 C 0.53 6.05 7.64 -10.99 -0.08 5.97 16 8 O -0.54 -7.97 15.03 5.56 0.08 -7.89 16 9 N -0.61 -6.42 3.06 -163.01 -0.50 -6.92 16 10 C 0.10 0.77 6.69 -2.53 -0.02 0.75 16 11 C -0.12 -1.21 6.71 -24.58 -0.17 -1.38 16 12 C 0.08 0.90 2.77 -65.87 -0.18 0.71 16 13 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 14 N -0.66 -10.03 5.93 -106.04 -0.63 -10.66 16 15 C 0.05 0.86 6.02 -4.97 -0.03 0.83 16 16 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 17 O -0.58 -15.62 15.78 5.55 0.09 -15.54 16 18 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 22 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.13 1.59 2.99 -66.95 -0.20 1.39 16 28 H 0.09 1.23 7.97 -51.93 -0.41 0.82 16 29 C -0.16 -1.83 9.11 37.16 0.34 -1.49 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.06 0.56 7.83 -51.93 -0.41 0.16 16 39 H 0.10 0.74 7.85 -51.93 -0.41 0.33 16 40 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.08 0.50 7.48 -51.93 -0.39 0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.35 5.69 8.15 -39.29 -0.32 5.37 16 46 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 47 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 48 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 49 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 50 H 0.07 0.90 6.89 -51.93 -0.36 0.55 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 423.08 15.07 6.38 6.38 Total: -1.00 -32.89 423.08 -8.54 -41.43 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -9.24 Total: 10.96 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.00 Total: 7.80 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.46 Total: -55.18 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.18 Total: -27.29 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.89 -8.54 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676626369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.931 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds