Wall clock time and date at job start Wed Apr 1 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.32857 * 2 1 4 4 C 1.54917 * 110.36732 * 122.23455 * 2 1 3 5 5 C 1.55154 * 101.58202 * 155.84967 * 4 2 1 6 6 H 1.09001 * 110.72190 * 83.04099 * 5 4 2 7 7 N 1.46895 * 110.72095 * 206.13491 * 5 4 2 8 8 C 1.46905 * 111.00171 * 204.99938 * 7 5 4 9 9 C 1.50706 * 109.46943 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99970 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.38951 * 119.99671 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99798 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00536 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00539 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00289 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00000 * 16 14 12 20 20 C 1.54328 * 102.94339 * 324.49809 * 5 4 2 21 21 N 1.47021 * 107.26910 * 22.19231 * 20 5 4 22 22 C 1.34776 * 125.64780 * 181.09299 * 21 20 5 23 23 O 1.21282 * 120.00097 * 179.97438 * 22 21 20 24 24 C 1.50704 * 119.99945 * 359.95871 * 22 21 20 25 25 O 1.42898 * 109.47282 * 179.97438 * 24 22 21 26 26 C 1.42893 * 114.00437 * 180.02562 * 25 24 22 27 27 C 1.53002 * 109.46991 * 59.99836 * 26 25 24 28 28 C 1.52997 * 109.47485 * 179.97438 * 26 25 24 29 29 C 1.52998 * 109.46988 * 299.99967 * 26 25 24 30 30 H 1.08999 * 109.47654 * 297.76050 * 1 2 3 31 31 H 1.08996 * 109.47274 * 57.76802 * 1 2 3 32 32 H 1.09007 * 109.47122 * 177.76373 * 1 2 3 33 33 H 1.08998 * 111.00271 * 37.77910 * 4 2 1 34 34 H 1.08998 * 111.00169 * 273.92675 * 4 2 1 35 35 H 1.00900 * 111.00389 * 328.95857 * 7 5 4 36 36 H 1.08996 * 109.46646 * 60.00323 * 8 7 5 37 37 H 1.09000 * 109.46710 * 299.99944 * 8 7 5 38 38 H 0.97004 * 119.99528 * 0.02562 * 11 9 8 39 39 H 0.96996 * 120.00340 * 179.97438 * 15 14 12 40 40 H 1.09006 * 109.88122 * 141.61040 * 20 5 4 41 41 H 1.08999 * 109.88381 * 262.77693 * 20 5 4 42 42 H 1.08998 * 109.47231 * 299.99732 * 24 22 21 43 43 H 1.09003 * 109.46914 * 60.00072 * 24 22 21 44 44 H 1.09000 * 109.47374 * 60.00177 * 27 26 25 45 45 H 1.09000 * 109.47218 * 180.02562 * 27 26 25 46 46 H 1.09003 * 109.47230 * 299.99978 * 27 26 25 47 47 H 1.09003 * 109.47039 * 60.00012 * 28 26 25 48 48 H 1.08999 * 109.47326 * 179.97438 * 28 26 25 49 49 H 1.08999 * 109.47335 * 300.00224 * 28 26 25 50 50 H 1.09003 * 109.47260 * 60.00006 * 29 26 25 51 51 H 1.09000 * 109.47331 * 179.97438 * 29 26 25 52 52 H 1.08994 * 109.47280 * 299.99933 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7746 1.2285 5 6 3.4777 -1.1990 0.7355 6 1 4.1951 -0.3904 0.8756 7 7 3.9262 -2.4146 1.4275 8 6 5.3926 -2.4995 1.4456 9 6 5.8142 -3.7569 2.1615 10 8 4.9755 -4.5086 2.6118 11 7 7.1231 -4.0467 2.3004 12 6 7.5066 -5.1902 2.9521 13 1 6.7599 -5.8591 3.3538 14 6 8.8561 -5.4886 3.0957 15 7 9.2237 -6.5851 3.7199 16 14 10.1477 -4.3321 2.4003 17 1 10.4641 -4.7256 1.0039 18 1 9.6270 -2.9414 2.4169 19 1 11.3785 -4.4098 3.2275 20 6 3.2493 -1.4776 -0.7651 21 7 2.0431 -0.7397 -1.1674 22 6 1.4965 -0.7399 -2.3994 23 8 0.4953 -0.0915 -2.6187 24 6 2.1295 -1.5456 -3.5045 25 8 1.3716 -1.3852 -4.7052 26 6 1.8894 -2.1124 -5.8210 27 6 1.9047 -3.6068 -5.4930 28 6 1.0037 -1.8684 -7.0444 29 6 3.3140 -1.6413 -6.1200 30 1 -0.3634 0.4786 0.9093 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3634 -1.0269 -0.0401 33 1 1.4511 -1.6466 1.4425 34 1 2.1397 -0.1242 2.1003 35 1 3.5498 -2.4582 2.3627 36 1 5.8003 -1.6318 1.9641 37 1 5.7679 -2.5211 0.4225 38 1 7.7937 -3.4457 1.9399 39 1 10.1657 -6.7936 3.8199 40 1 4.1065 -1.1293 -1.3415 41 1 3.1013 -2.5455 -0.9256 42 1 3.1494 -1.1981 -3.6690 43 1 2.1453 -2.5986 -3.2232 44 1 0.8898 -3.9425 -5.2799 45 1 2.3001 -4.1615 -6.3439 46 1 2.5355 -3.7811 -4.6213 47 1 0.9924 -0.8038 -7.2782 48 1 1.3989 -2.4227 -7.8956 49 1 -0.0111 -2.2042 -6.8311 50 1 3.9449 -1.8156 -5.2484 51 1 3.7092 -2.1964 -6.9708 52 1 3.3032 -0.5768 -6.3537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676724052.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:56 Heat of formation + Delta-G solvation = -107.187054 kcal Electronic energy + Delta-G solvation = -30383.017104 eV Core-core repulsion = 26189.980955 eV Total energy + Delta-G solvation = -4193.036149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59948 -39.30007 -38.55074 -37.62237 -34.94313 -33.91606 -33.76403 -32.29704 -31.72910 -30.20965 -28.54316 -27.76883 -27.22928 -26.49482 -25.96048 -23.94837 -22.24677 -21.04162 -20.29214 -19.48584 -19.18924 -18.39363 -17.45627 -17.06689 -16.48951 -16.19905 -16.06447 -15.50130 -15.26421 -14.93152 -14.74714 -14.56683 -14.30482 -13.87180 -13.77078 -13.59706 -13.57444 -13.18852 -13.18425 -12.75194 -12.58873 -12.56455 -12.41614 -12.33132 -12.19227 -12.17706 -12.08612 -12.04400 -11.82479 -11.61083 -11.44934 -11.25601 -11.19869 -10.98037 -10.89245 -10.64907 -10.02984 -9.90401 -9.66203 -9.63228 -8.84320 -8.69483 -8.34555 -8.23690 -6.36371 -3.88209 2.40906 2.44568 2.97050 3.01870 3.10685 3.49247 3.66221 3.93008 4.04996 4.16889 4.26448 4.44082 4.46585 4.63057 4.67110 4.69846 4.82710 4.87155 4.90427 4.95901 5.11938 5.15674 5.18520 5.20028 5.21195 5.35376 5.36984 5.41078 5.44356 5.48698 5.49676 5.49783 5.53374 5.67779 5.69400 5.69475 5.74818 5.85901 5.89701 5.90782 5.98305 6.02031 6.31527 6.84739 6.94775 7.29203 7.40325 7.52044 8.01389 8.08485 8.53438 8.89220 9.36346 9.75665 10.76627 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.002392 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.245916 B =11701.512463 C =13515.135171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.134 4.134 5 C 0.075 3.925 6 H 0.064 0.936 7 N -0.658 5.658 8 C 0.046 3.954 9 C 0.448 3.552 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.276 1.276 20 C 0.103 3.897 21 N -0.614 5.614 22 C 0.534 3.466 23 O -0.520 6.520 24 C 0.042 3.958 25 O -0.352 6.352 26 C 0.105 3.895 27 C -0.182 4.182 28 C -0.136 4.136 29 C -0.181 4.181 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.358 0.642 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 14.650 -16.690 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.172 4.172 5 C -0.036 4.036 6 H 0.082 0.918 7 N -0.292 5.292 8 C -0.087 4.087 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.229 5.229 12 C -0.435 4.435 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.707 3.293 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.202 1.202 20 C -0.021 4.021 21 N -0.351 5.351 22 C 0.322 3.678 23 O -0.395 6.395 24 C -0.037 4.037 25 O -0.271 6.271 26 C 0.066 3.934 27 C -0.239 4.239 28 C -0.193 4.193 29 C -0.238 4.238 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.179 0.821 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.400 14.039 -17.074 25.345 hybrid contribution 1.992 1.172 0.266 2.326 sum -10.408 15.210 -16.808 24.943 Atomic orbital electron populations 1.22138 0.93618 1.03060 1.03210 1.21847 0.95483 0.95183 0.83770 0.90619 1.23122 0.95828 1.01175 0.97092 1.22488 0.96119 0.91648 0.93306 0.91800 1.60007 1.08169 1.36028 1.24984 1.21804 0.88702 0.96929 1.01221 1.19665 0.83041 0.88395 0.85503 1.90577 1.50655 1.51182 1.52191 1.42208 1.05602 1.22756 1.52308 1.19427 0.93604 0.98493 1.31937 0.86257 1.25052 0.97121 0.96672 0.97324 1.69619 1.17313 1.23906 1.41129 0.86667 0.82192 0.80601 0.79877 1.19583 1.19539 1.20168 1.22201 0.86507 0.97830 0.95555 1.48450 1.28660 1.48988 1.09051 1.19843 0.84176 0.81994 0.81796 1.90671 1.24615 1.42873 1.81341 1.22206 0.95733 1.00076 0.85708 1.88071 1.51768 1.70254 1.17020 1.21596 0.93721 0.91039 0.87074 1.22470 1.03125 0.95740 1.02585 1.21737 0.99843 1.02776 0.94974 1.22460 0.96362 1.02478 1.02514 0.92023 0.89782 0.92432 0.89072 0.89633 0.82058 0.93450 0.89454 0.79691 0.91559 0.91528 0.89509 0.90236 0.89911 0.91463 0.91204 0.91975 0.91719 0.90988 0.91635 0.92094 0.91200 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.59 37.15 0.32 -1.37 16 2 C 0.14 1.37 3.77 -66.42 -0.25 1.12 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.19 5.88 -24.58 -0.14 -1.34 16 5 C 0.08 0.74 3.28 -65.88 -0.22 0.53 16 6 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 7 N -0.66 -8.76 5.94 -106.05 -0.63 -9.39 16 8 C 0.05 0.67 6.03 -4.97 -0.03 0.64 16 9 C 0.45 9.53 7.82 -10.98 -0.09 9.45 16 10 O -0.56 -14.45 15.78 5.55 0.09 -14.36 16 11 N -0.59 -13.37 5.09 -10.96 -0.06 -13.43 16 12 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 13 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.18 13.96 55.50 0.77 -24.41 16 16 Si 0.88 18.72 27.74 -169.99 -4.72 14.00 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 C 0.10 1.00 6.24 -3.06 -0.02 0.98 16 21 N -0.61 -6.60 3.24 -163.04 -0.53 -7.13 16 22 C 0.53 6.69 7.71 -10.98 -0.08 6.61 16 23 O -0.52 -8.24 14.22 -14.35 -0.20 -8.44 16 24 C 0.04 0.43 4.81 36.01 0.17 0.61 16 25 O -0.35 -4.12 9.52 -55.14 -0.52 -4.64 16 26 C 0.10 0.89 1.14 -90.62 -0.10 0.79 16 27 C -0.18 -1.38 8.25 37.16 0.31 -1.08 16 28 C -0.14 -1.00 8.84 37.16 0.33 -0.68 16 29 C -0.18 -1.28 8.25 37.16 0.31 -0.97 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.05 6.09 -51.93 -0.32 0.74 16 32 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.36 5.00 8.13 -39.29 -0.32 4.68 16 36 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.37 7.31 5.76 -40.82 -0.24 7.07 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 42 H 0.08 0.67 6.42 -51.93 -0.33 0.33 16 43 H 0.08 0.76 6.41 -51.93 -0.33 0.43 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 51 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -34.17 411.92 -8.27 -42.44 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.93 Total: 11.39 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 0.25 Total: 7.76 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.44 Total: -54.36 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.64 Total: -27.44 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.72 Total: 14.00 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.17 -8.27 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676724052.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.747 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds