Wall clock time and date at job start Wed Apr 1 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 6 6 H 1.09000 * 111.00863 * 277.43010 * 5 4 2 7 7 N 1.46904 * 111.00270 * 153.58009 * 5 4 2 8 8 C 1.46899 * 110.99753 * 161.35445 * 7 5 4 9 9 C 1.50699 * 109.47151 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99816 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.37104 * 119.99790 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99839 * 359.97438 * 12 11 9 14 14 C 1.38948 * 119.99855 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00318 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47007 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47373 * 119.99131 * 16 14 12 19 19 H 1.48506 * 109.47083 * 239.99267 * 16 14 12 20 20 C 1.54915 * 101.57970 * 35.50676 * 5 4 2 21 21 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 22 22 C 1.34778 * 125.65105 * 59.55700 * 21 2 1 23 23 O 1.21280 * 119.99826 * 0.02562 * 22 21 2 24 24 C 1.50698 * 120.00118 * 180.02562 * 22 21 2 25 25 O 1.42899 * 109.47023 * 179.97438 * 24 22 21 26 26 C 1.42894 * 114.00265 * 179.97438 * 25 24 22 27 27 C 1.52999 * 109.47137 * 60.00176 * 26 25 24 28 28 C 1.53008 * 109.47374 * 180.02562 * 26 25 24 29 29 C 1.52998 * 109.47437 * 300.00180 * 26 25 24 30 30 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 33 33 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 34 34 H 1.09008 * 110.71652 * 338.86563 * 4 2 1 35 35 H 1.00899 * 110.99713 * 285.30055 * 7 5 4 36 36 H 1.09002 * 109.47341 * 299.99844 * 8 7 5 37 37 H 1.08999 * 109.47257 * 59.99987 * 8 7 5 38 38 H 0.96996 * 120.00272 * 0.02562 * 11 9 8 39 39 H 0.96999 * 120.00518 * 180.02562 * 15 14 12 40 40 H 1.08998 * 110.36803 * 204.15086 * 20 5 4 41 41 H 1.09004 * 110.45685 * 81.87310 * 20 5 4 42 42 H 1.08998 * 109.47243 * 299.99822 * 24 22 21 43 43 H 1.08994 * 109.47245 * 60.00184 * 24 22 21 44 44 H 1.09002 * 109.46997 * 59.99759 * 27 26 25 45 45 H 1.09001 * 109.47711 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.47188 * 300.00345 * 27 26 25 47 47 H 1.08992 * 109.46932 * 60.00713 * 28 26 25 48 48 H 1.09009 * 109.46862 * 180.02562 * 28 26 25 49 49 H 1.08994 * 109.47150 * 300.00105 * 28 26 25 50 50 H 1.09003 * 109.47355 * 59.99610 * 29 26 25 51 51 H 1.09001 * 109.47234 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.47061 * 299.99983 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 6 2.3519 -2.1704 0.6896 6 1 1.4452 -2.7745 0.6568 7 7 3.3965 -2.8349 1.4802 8 6 3.3757 -4.2879 1.2645 9 6 4.4589 -4.9338 2.0894 10 8 5.1773 -4.2509 2.7885 11 7 4.6288 -6.2702 2.0510 12 6 5.6140 -6.8579 2.8018 13 1 6.2542 -6.2497 3.4238 14 6 5.7894 -8.2356 2.7618 15 7 5.0108 -8.9755 2.0047 16 14 7.1313 -9.0364 3.7854 17 1 7.8637 -7.9919 4.5456 18 1 6.5207 -10.0025 4.7336 19 1 8.0765 -9.7512 2.8905 20 6 2.8569 -1.8488 -0.7392 21 7 2.0300 -0.7124 -1.1848 22 6 1.7754 -0.3812 -2.4662 23 8 1.0793 0.5796 -2.7173 24 6 2.3557 -1.2047 -3.5869 25 8 1.9452 -0.6579 -4.8417 26 6 2.4445 -1.3684 -5.9766 27 6 1.9491 -2.8152 -5.9309 28 6 1.9451 -0.6980 -7.2581 29 6 3.9742 -1.3523 -5.9559 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5206 -0.8861 32 1 -0.3634 0.5071 0.8939 33 1 2.9657 -0.2853 1.6179 34 1 1.2917 -0.7917 2.0190 35 1 4.3063 -2.4516 1.2720 36 1 2.4056 -4.6856 1.5626 37 1 3.5471 -4.5011 0.2094 38 1 4.0541 -6.8163 1.4921 39 1 5.1330 -9.9374 1.9771 40 1 2.7089 -2.7062 -1.3958 41 1 3.9094 -1.5663 -0.7167 42 1 3.4437 -1.1905 -3.5225 43 1 2.0003 -2.2318 -3.5049 44 1 0.8592 -2.8267 -5.9456 45 1 2.3302 -3.3574 -6.7963 46 1 2.3051 -3.2926 -5.0179 47 1 2.2985 0.3325 -7.2905 48 1 2.3257 -1.2403 -8.1238 49 1 0.8554 -0.7092 -7.2731 50 1 4.3304 -1.8295 -5.0430 51 1 4.3550 -1.8946 -6.8214 52 1 4.3272 -0.3215 -5.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676724053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:09 Heat of formation + Delta-G solvation = -140.114895 kcal Electronic energy + Delta-G solvation = -30364.646634 eV Core-core repulsion = 26170.182627 eV Total energy + Delta-G solvation = -4194.464007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.51159 -40.24192 -39.88065 -38.69410 -36.22488 -35.56612 -34.47683 -33.25010 -33.13276 -31.01487 -29.29829 -28.33424 -27.99354 -27.72528 -26.79188 -25.70454 -23.41671 -21.84753 -21.10647 -20.88343 -20.16637 -19.89301 -18.44189 -17.78205 -17.55092 -17.21825 -17.10112 -16.54894 -16.45818 -16.27884 -15.78869 -15.58618 -15.27297 -15.05219 -14.67691 -14.58618 -14.41400 -14.31004 -14.06922 -13.99445 -13.69500 -13.47934 -13.36727 -13.15566 -13.12386 -12.98333 -12.89552 -12.82592 -12.78617 -12.68639 -12.38562 -12.35227 -12.25421 -12.11053 -11.95854 -11.60948 -11.59090 -11.48881 -10.82605 -10.63984 -10.31517 -9.98495 -9.81398 -9.32421 -8.44817 -5.92721 1.38020 1.44050 1.46980 1.56754 1.57949 2.08970 2.30467 2.70010 2.96453 3.23279 3.36807 3.46314 3.68890 3.75027 3.85574 3.92134 4.00476 4.03970 4.07359 4.10581 4.17956 4.25640 4.36313 4.38485 4.47347 4.60455 4.61826 4.62574 4.65516 4.70203 4.76605 4.78705 4.79830 4.90974 4.92171 4.96002 5.06053 5.11428 5.13392 5.28324 5.31371 5.32447 5.40314 5.44067 5.90418 6.10985 6.13834 6.35042 6.42200 6.62916 7.05253 7.15871 7.60121 8.15360 8.72619 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.002302 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.264863 B =12161.453918 C =14157.744945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.069 0.931 4 C -0.108 4.108 5 C 0.084 3.916 6 H 0.106 0.894 7 N -0.663 5.663 8 C 0.063 3.937 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.574 5.574 12 C -0.330 4.330 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.274 1.274 18 H -0.273 1.273 19 H -0.271 1.271 20 C 0.064 3.936 21 N -0.607 5.607 22 C 0.525 3.475 23 O -0.565 6.565 24 C 0.046 3.954 25 O -0.383 6.383 26 C 0.096 3.904 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.179 4.179 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.350 0.650 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 11.941 -15.828 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.027 4.027 6 H 0.124 0.876 7 N -0.295 5.295 8 C -0.069 4.069 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.460 4.460 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.061 4.061 21 N -0.343 5.343 22 C 0.314 3.686 23 O -0.444 6.444 24 C -0.033 4.033 25 O -0.302 6.302 26 C 0.057 3.943 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.236 4.236 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.105 0.895 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.990 12.840 -15.060 21.343 hybrid contribution 0.895 -0.959 -0.551 1.423 sum -7.095 11.881 -15.611 20.861 Atomic orbital electron populations 1.22090 0.94318 1.02472 1.02582 1.21666 0.95051 0.96182 0.83979 0.91273 1.22676 1.02717 0.93572 0.95696 1.22795 0.95528 0.95737 0.88605 0.87598 1.60102 1.09139 1.02071 1.58180 1.21613 0.98120 0.88984 0.98151 1.20924 0.87850 0.82390 0.86283 1.90509 1.50744 1.63420 1.46359 1.41938 1.31612 1.06135 1.41443 1.19672 1.11680 0.91148 1.23474 0.90379 1.25978 1.00435 0.96288 0.98517 1.69663 1.39687 1.06901 1.39850 0.84924 0.77805 0.77942 0.78014 1.19842 1.19826 1.19665 1.23404 0.95527 0.89025 0.98115 1.48447 1.50585 1.30801 1.04426 1.20414 0.80421 0.84800 0.82936 1.90684 1.39822 1.30211 1.83667 1.22250 1.00473 0.97245 0.83362 1.88052 1.74261 1.55053 1.12855 1.21853 0.93949 0.92311 0.86157 1.22449 1.02020 0.95370 1.03765 1.21785 1.01722 1.01089 0.94788 1.22450 0.94558 1.02872 1.03736 0.92056 0.93692 0.89861 0.90022 0.88307 0.83019 0.87531 0.90672 0.76898 0.91372 0.88713 0.90177 0.88560 0.88314 0.92259 0.89542 0.91742 0.92509 0.88714 0.92464 0.91806 0.89515 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.06 71.98 0.65 -2.33 16 2 C 0.13 2.59 3.49 45.34 0.16 2.75 16 3 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -1.87 6.19 31.78 0.20 -1.68 16 5 C 0.08 1.54 3.32 46.31 0.15 1.69 16 6 H 0.11 1.79 7.92 -2.39 -0.02 1.77 16 7 N -0.66 -17.01 6.00 -488.39 -2.93 -19.94 16 8 C 0.06 1.82 6.04 85.56 0.52 2.33 16 9 C 0.44 19.10 7.82 87.66 0.69 19.79 16 10 O -0.62 -32.48 15.78 -3.07 -0.05 -32.53 16 11 N -0.57 -27.64 5.29 -306.98 -1.62 -29.26 16 12 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 13 H 0.08 4.59 7.16 -2.91 -0.02 4.56 16 14 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 15 N -0.92 -47.90 13.05 21.66 0.28 -47.62 16 16 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 20 C 0.06 1.03 6.27 86.86 0.54 1.57 16 21 N -0.61 -12.17 3.08 -788.06 -2.43 -14.59 16 22 C 0.53 12.92 7.71 87.66 0.68 13.59 16 23 O -0.57 -18.80 15.40 16.01 0.25 -18.56 16 24 C 0.05 0.86 4.62 71.24 0.33 1.19 16 25 O -0.38 -8.74 9.52 -129.94 -1.24 -9.98 16 26 C 0.10 1.49 1.14 -10.79 -0.01 1.48 16 27 C -0.18 -2.24 8.25 71.98 0.59 -1.65 16 28 C -0.14 -1.89 8.84 71.98 0.64 -1.26 16 29 C -0.18 -2.27 8.25 71.98 0.59 -1.67 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.10 6.75 -2.39 -0.02 1.08 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.56 7.83 -2.38 -0.02 1.55 16 35 H 0.35 9.45 8.01 -89.70 -0.72 8.73 16 36 H 0.11 2.74 8.09 -2.39 -0.02 2.72 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.40 18.02 7.90 -92.71 -0.73 17.28 16 39 H 0.28 13.51 8.31 -92.71 -0.77 12.73 16 40 H 0.09 1.21 7.48 -2.39 -0.02 1.19 16 41 H 0.08 1.25 7.81 -2.38 -0.02 1.23 16 42 H 0.10 1.47 6.42 -2.39 -0.02 1.45 16 43 H 0.10 1.45 6.12 -2.39 -0.01 1.44 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.75 6.54 -2.38 -0.02 0.73 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.06 0.76 6.54 -2.39 -0.02 0.74 16 51 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.86 415.74 0.77 -72.09 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -0.52 Total: 38.24 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 7.01 Total: 18.44 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -6.70 Total: -111.42 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.04 Total: -61.07 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.86 0.77 -72.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676724053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.023 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds