Wall clock time and date at job start Wed Apr 1 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 109.87202 * 2 1 4 4 C 1.54318 * 109.88256 * 238.98573 * 2 1 3 5 5 C 1.55150 * 102.94293 * 262.61919 * 4 2 1 6 6 H 1.09002 * 111.00482 * 82.61005 * 5 4 2 7 7 N 1.46901 * 111.00491 * 206.42534 * 5 4 2 8 8 C 1.46902 * 110.99844 * 204.99741 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7 12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8 13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00005 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00325 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47047 * 89.99811 * 16 14 12 18 18 H 1.48501 * 109.47447 * 210.00167 * 16 14 12 19 19 H 1.48499 * 109.46902 * 330.00508 * 16 14 12 20 20 C 1.54913 * 101.58385 * 324.49780 * 5 4 2 21 21 N 1.47016 * 110.01281 * 121.09551 * 2 1 3 22 22 C 1.34780 * 125.65135 * 300.50830 * 21 2 1 23 23 O 1.21275 * 119.99840 * 359.97438 * 22 21 2 24 24 C 1.50696 * 119.99935 * 179.97438 * 22 21 2 25 25 O 1.42902 * 109.47038 * 179.97438 * 24 22 21 26 26 C 1.42901 * 113.99874 * 180.02562 * 25 24 22 27 27 C 1.52995 * 109.47461 * 59.99820 * 26 25 24 28 28 C 1.52999 * 109.46918 * 180.02562 * 26 25 24 29 29 C 1.52994 * 109.47120 * 299.99629 * 26 25 24 30 30 H 1.08995 * 109.47387 * 181.01617 * 1 2 3 31 31 H 1.09008 * 109.47480 * 301.01524 * 1 2 3 32 32 H 1.09007 * 109.47434 * 61.01680 * 1 2 3 33 33 H 1.09007 * 110.72394 * 144.25368 * 4 2 1 34 34 H 1.09004 * 110.72516 * 20.98255 * 4 2 1 35 35 H 1.00902 * 111.00235 * 81.04978 * 7 5 4 36 36 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 37 37 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 0.96996 * 120.00330 * 179.97438 * 15 14 12 40 40 H 1.08992 * 110.37086 * 155.84604 * 20 5 4 41 41 H 1.09006 * 110.36399 * 278.17237 * 20 5 4 42 42 H 1.08997 * 109.46998 * 299.99782 * 24 22 21 43 43 H 1.09003 * 109.47204 * 60.00066 * 24 22 21 44 44 H 1.08998 * 109.47087 * 59.99791 * 27 26 25 45 45 H 1.09003 * 109.47630 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.47360 * 299.99895 * 27 26 25 47 47 H 1.09002 * 109.47624 * 59.99525 * 28 26 25 48 48 H 1.09004 * 109.47643 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47243 * 300.00024 * 28 26 25 50 50 H 1.09004 * 109.47457 * 60.00016 * 29 26 25 51 51 H 1.08999 * 109.47459 * 180.02562 * 29 26 25 52 52 H 1.09003 * 109.47249 * 300.00713 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0547 -0.7477 -1.2437 5 6 2.3556 -2.1672 -0.6945 6 1 1.4504 -2.7736 -0.6623 7 7 3.4007 -2.8281 -1.4876 8 6 3.2884 -4.2898 -1.3928 9 6 4.3740 -4.9316 -2.2177 10 8 5.1640 -4.2395 -2.8246 11 7 4.4709 -6.2746 -2.2763 12 6 5.4620 -6.8585 -3.0222 13 1 6.1654 -6.2422 -3.5625 14 6 5.5617 -8.2430 -3.0831 15 7 4.7055 -8.9929 -2.4260 16 14 6.9116 -9.0386 -4.1000 17 1 8.1162 -9.2375 -3.2546 18 1 6.4404 -10.3524 -4.6071 19 1 7.2515 -8.1583 -5.2466 20 6 2.8618 -1.8472 0.7342 21 7 2.0331 -0.7134 1.1829 22 6 1.7795 -0.3849 2.4652 23 8 1.0817 0.5740 2.7189 24 6 2.3630 -1.2092 3.5837 25 8 1.9541 -0.6648 4.8401 26 6 2.4565 -1.3762 5.9730 27 6 3.9861 -1.3579 5.9495 28 6 1.9576 -0.7091 7.2563 29 6 1.9630 -2.8236 5.9262 30 1 -0.3634 -1.0274 0.0182 31 1 -0.3634 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8990 33 1 2.9641 -0.2792 -1.6203 34 1 1.2908 -0.7886 -2.0202 35 1 4.3187 -2.5171 -1.2070 36 1 2.3141 -4.6043 -1.7671 37 1 3.3937 -4.5955 -0.3519 38 1 3.8394 -6.8281 -1.7909 39 1 4.7748 -9.9594 -2.4688 40 1 2.7165 -2.7060 1.3894 41 1 3.9135 -1.5618 0.7089 42 1 2.0095 -2.2369 3.5003 43 1 3.4509 -1.1927 3.5178 44 1 4.3377 -0.3267 5.9828 45 1 4.3694 -1.9002 6.8139 46 1 4.3412 -1.8334 5.0352 47 1 0.8678 -0.7225 7.2729 48 1 2.3404 -1.2520 8.1206 49 1 2.3087 0.3223 7.2900 50 1 2.3180 -3.2992 5.0118 51 1 2.3458 -3.3662 6.7905 52 1 0.8732 -2.8367 5.9428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676724054.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:25 Heat of formation + Delta-G solvation = -116.787362 kcal Electronic energy + Delta-G solvation = -30323.416990 eV Core-core repulsion = 26129.964540 eV Total energy + Delta-G solvation = -4193.452450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62242 -39.33596 -38.39831 -37.62447 -34.87843 -33.85883 -33.78363 -32.29934 -31.30331 -29.97962 -28.58152 -27.80474 -27.22507 -26.37001 -25.91978 -24.08158 -22.52923 -21.01373 -20.25620 -19.37835 -19.26855 -17.97995 -17.58419 -16.71720 -16.51822 -16.39342 -15.87420 -15.56441 -15.28418 -14.79334 -14.55243 -14.46435 -14.15434 -13.86456 -13.81407 -13.67141 -13.57655 -13.18563 -13.13435 -12.98181 -12.63031 -12.49462 -12.41802 -12.26868 -12.22071 -12.11906 -12.10094 -11.80329 -11.63906 -11.57731 -11.48222 -11.10827 -11.07468 -10.95577 -10.78153 -10.43562 -10.27053 -9.94747 -9.86735 -9.56714 -8.92188 -8.55926 -8.19750 -8.02468 -6.47361 -3.88397 2.38317 2.40426 3.13770 3.23179 3.28893 3.46173 3.83220 3.95855 4.15183 4.26889 4.38696 4.42748 4.44567 4.60790 4.64120 4.75612 4.81400 4.89162 4.91844 5.04419 5.10043 5.12195 5.16561 5.17807 5.20655 5.32096 5.33352 5.35230 5.45256 5.46167 5.46763 5.54400 5.66023 5.66803 5.76631 5.84660 5.86500 5.87488 5.89977 5.93450 6.08586 6.18293 6.24257 6.81279 7.05339 7.25059 7.48135 7.50067 7.97200 8.00068 8.54523 9.12061 9.47624 9.98517 10.70230 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.002252 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.094489 B =12431.301189 C =14320.608805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.076 0.924 4 C -0.116 4.116 5 C 0.080 3.920 6 H 0.094 0.906 7 N -0.652 5.652 8 C 0.048 3.952 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.064 3.936 21 N -0.611 5.611 22 C 0.532 3.468 23 O -0.519 6.519 24 C 0.043 3.957 25 O -0.352 6.352 26 C 0.104 3.896 27 C -0.181 4.181 28 C -0.136 4.136 29 C -0.181 4.181 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.353 0.647 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 12.920 15.860 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.032 4.032 6 H 0.112 0.888 7 N -0.283 5.283 8 C -0.084 4.084 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.061 4.061 21 N -0.348 5.348 22 C 0.319 3.681 23 O -0.394 6.394 24 C -0.037 4.037 25 O -0.271 6.271 26 C 0.065 3.935 27 C -0.238 4.238 28 C -0.193 4.193 29 C -0.239 4.239 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.174 0.826 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.551 13.905 15.113 21.881 hybrid contribution 0.850 -1.465 0.694 1.830 sum -6.701 12.441 15.808 21.203 Atomic orbital electron populations 1.22152 0.94573 1.02421 1.02961 1.21623 0.94824 0.96350 0.83881 0.90574 1.22748 1.02553 0.94332 0.95859 1.22794 0.96175 0.95793 0.88473 0.88767 1.60124 1.07014 1.04932 1.56274 1.21761 1.00205 0.88018 0.98419 1.19763 0.87889 0.83132 0.86777 1.90534 1.44919 1.62308 1.48974 1.41866 1.29325 1.04550 1.44143 1.19701 1.08147 0.89989 1.25101 0.87882 1.25267 0.98469 0.96257 0.97915 1.69606 1.36455 1.05892 1.42303 0.85855 0.80240 0.78352 0.79847 1.20404 1.20894 1.19364 1.23318 0.95549 0.88972 0.98266 1.48411 1.50890 1.30832 1.04702 1.19884 0.81061 0.85133 0.82011 1.90707 1.37587 1.28233 1.82857 1.22196 0.99782 0.97190 0.84528 1.88082 1.73408 1.53807 1.11756 1.21606 0.93126 0.91773 0.86960 1.22462 0.95493 1.03089 1.02798 1.21740 1.02187 1.01235 0.94178 1.22464 1.02497 0.96087 1.02804 0.92461 0.91234 0.91504 0.89732 0.89273 0.82615 0.89372 0.93715 0.77457 0.91822 0.90633 0.90682 0.90160 0.90168 0.91515 0.91157 0.92110 0.91646 0.90952 0.91657 0.92116 0.91147 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.06 37.15 0.34 -1.30 16 2 C 0.14 1.39 3.49 -66.96 -0.23 1.16 16 3 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 4 C -0.12 -1.13 6.19 -24.90 -0.15 -1.29 16 5 C 0.08 0.83 3.38 -65.56 -0.22 0.61 16 6 H 0.09 0.96 7.83 -51.93 -0.41 0.56 16 7 N -0.65 -9.10 6.04 -105.72 -0.64 -9.74 16 8 C 0.05 0.76 6.03 -4.97 -0.03 0.73 16 9 C 0.44 9.74 7.82 -10.98 -0.09 9.66 16 10 O -0.58 -15.10 15.78 5.55 0.09 -15.02 16 11 N -0.56 -13.62 5.29 -10.96 -0.06 -13.68 16 12 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 13 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 16 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.06 0.60 6.29 -2.52 -0.02 0.58 16 21 N -0.61 -6.56 3.08 -163.02 -0.50 -7.06 16 22 C 0.53 6.67 7.71 -10.99 -0.08 6.59 16 23 O -0.52 -8.43 15.41 -14.35 -0.22 -8.65 16 24 C 0.04 0.43 4.62 36.00 0.17 0.60 16 25 O -0.35 -4.08 9.52 -55.14 -0.52 -4.61 16 26 C 0.10 0.87 1.14 -90.63 -0.10 0.77 16 27 C -0.18 -1.29 8.25 37.15 0.31 -0.98 16 28 C -0.14 -0.99 8.84 37.16 0.33 -0.66 16 29 C -0.18 -1.30 8.25 37.15 0.31 -0.99 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.84 6.78 -51.92 -0.35 0.49 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.82 7.83 -51.93 -0.41 0.41 16 35 H 0.35 5.07 7.89 -39.29 -0.31 4.76 16 36 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.39 9.05 7.90 -40.82 -0.32 8.72 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 41 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 42 H 0.08 0.68 6.13 -51.93 -0.32 0.36 16 43 H 0.08 0.68 6.41 -51.93 -0.33 0.35 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 415.61 15.07 6.26 6.26 Total: -1.00 -33.07 415.61 -8.54 -41.61 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.92 Total: 10.77 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 0.28 Total: 7.73 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.47 Total: -53.62 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.66 Total: -28.28 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.07 -8.54 -41.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676724054.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.177 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds