Wall clock time and date at job start Wed Apr 1 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 109.87202 * 2 1 4 4 C 1.54318 * 109.88256 * 238.98573 * 2 1 3 5 5 C 1.55150 * 102.94293 * 262.61919 * 4 2 1 6 6 H 1.09002 * 111.00482 * 82.61005 * 5 4 2 7 7 N 1.46901 * 111.00491 * 206.42534 * 5 4 2 8 8 C 1.46902 * 110.99844 * 204.99741 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7 12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8 13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00005 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00325 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47047 * 89.99811 * 16 14 12 18 18 H 1.48501 * 109.47447 * 210.00167 * 16 14 12 19 19 H 1.48499 * 109.46902 * 330.00508 * 16 14 12 20 20 C 1.54913 * 101.58385 * 324.49780 * 5 4 2 21 21 N 1.47016 * 110.01281 * 121.09551 * 2 1 3 22 22 C 1.34780 * 125.65135 * 300.50830 * 21 2 1 23 23 O 1.21275 * 119.99840 * 359.97438 * 22 21 2 24 24 C 1.50696 * 119.99935 * 179.97438 * 22 21 2 25 25 O 1.42902 * 109.47038 * 179.97438 * 24 22 21 26 26 C 1.42901 * 113.99874 * 180.02562 * 25 24 22 27 27 C 1.52995 * 109.47461 * 59.99820 * 26 25 24 28 28 C 1.52999 * 109.46918 * 180.02562 * 26 25 24 29 29 C 1.52994 * 109.47120 * 299.99629 * 26 25 24 30 30 H 1.08995 * 109.47387 * 181.01617 * 1 2 3 31 31 H 1.09008 * 109.47480 * 301.01524 * 1 2 3 32 32 H 1.09007 * 109.47434 * 61.01680 * 1 2 3 33 33 H 1.09007 * 110.72394 * 144.25368 * 4 2 1 34 34 H 1.09004 * 110.72516 * 20.98255 * 4 2 1 35 35 H 1.00902 * 111.00235 * 81.04978 * 7 5 4 36 36 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 37 37 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 0.96996 * 120.00330 * 179.97438 * 15 14 12 40 40 H 1.08992 * 110.37086 * 155.84604 * 20 5 4 41 41 H 1.09006 * 110.36399 * 278.17237 * 20 5 4 42 42 H 1.08997 * 109.46998 * 299.99782 * 24 22 21 43 43 H 1.09003 * 109.47204 * 60.00066 * 24 22 21 44 44 H 1.08998 * 109.47087 * 59.99791 * 27 26 25 45 45 H 1.09003 * 109.47630 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.47360 * 299.99895 * 27 26 25 47 47 H 1.09002 * 109.47624 * 59.99525 * 28 26 25 48 48 H 1.09004 * 109.47643 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47243 * 300.00024 * 28 26 25 50 50 H 1.09004 * 109.47457 * 60.00016 * 29 26 25 51 51 H 1.08999 * 109.47459 * 180.02562 * 29 26 25 52 52 H 1.09003 * 109.47249 * 300.00713 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0547 -0.7477 -1.2437 5 6 2.3556 -2.1672 -0.6945 6 1 1.4504 -2.7736 -0.6623 7 7 3.4007 -2.8281 -1.4876 8 6 3.2884 -4.2898 -1.3928 9 6 4.3740 -4.9316 -2.2177 10 8 5.1640 -4.2395 -2.8246 11 7 4.4709 -6.2746 -2.2763 12 6 5.4620 -6.8585 -3.0222 13 1 6.1654 -6.2422 -3.5625 14 6 5.5617 -8.2430 -3.0831 15 7 4.7055 -8.9929 -2.4260 16 14 6.9116 -9.0386 -4.1000 17 1 8.1162 -9.2375 -3.2546 18 1 6.4404 -10.3524 -4.6071 19 1 7.2515 -8.1583 -5.2466 20 6 2.8618 -1.8472 0.7342 21 7 2.0331 -0.7134 1.1829 22 6 1.7795 -0.3849 2.4652 23 8 1.0817 0.5740 2.7189 24 6 2.3630 -1.2092 3.5837 25 8 1.9541 -0.6648 4.8401 26 6 2.4565 -1.3762 5.9730 27 6 3.9861 -1.3579 5.9495 28 6 1.9576 -0.7091 7.2563 29 6 1.9630 -2.8236 5.9262 30 1 -0.3634 -1.0274 0.0182 31 1 -0.3634 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8990 33 1 2.9641 -0.2792 -1.6203 34 1 1.2908 -0.7886 -2.0202 35 1 4.3187 -2.5171 -1.2070 36 1 2.3141 -4.6043 -1.7671 37 1 3.3937 -4.5955 -0.3519 38 1 3.8394 -6.8281 -1.7909 39 1 4.7748 -9.9594 -2.4688 40 1 2.7165 -2.7060 1.3894 41 1 3.9135 -1.5618 0.7089 42 1 2.0095 -2.2369 3.5003 43 1 3.4509 -1.1927 3.5178 44 1 4.3377 -0.3267 5.9828 45 1 4.3694 -1.9002 6.8139 46 1 4.3412 -1.8334 5.0352 47 1 0.8678 -0.7225 7.2729 48 1 2.3404 -1.2520 8.1206 49 1 2.3087 0.3223 7.2900 50 1 2.3180 -3.2992 5.0118 51 1 2.3458 -3.3662 6.7905 52 1 0.8732 -2.8367 5.9428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676724054.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:21 Heat of formation + Delta-G solvation = -139.881796 kcal Electronic energy + Delta-G solvation = -30324.418440 eV Core-core repulsion = 26129.964540 eV Total energy + Delta-G solvation = -4194.453899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50545 -40.23743 -39.88013 -38.69023 -36.22548 -35.56543 -34.47634 -33.24770 -33.13193 -31.03281 -29.29504 -28.33388 -27.98917 -27.72888 -26.79001 -25.68586 -23.42936 -21.84599 -21.10212 -20.88109 -20.16158 -19.89490 -18.43212 -17.79114 -17.54345 -17.21332 -17.09212 -16.54408 -16.46805 -16.28772 -15.79304 -15.58522 -15.27746 -15.05173 -14.67442 -14.57977 -14.38079 -14.30621 -14.07353 -13.98944 -13.69602 -13.48074 -13.36984 -13.15635 -13.10828 -12.97460 -12.89464 -12.82747 -12.78723 -12.68585 -12.39469 -12.36683 -12.25255 -12.12091 -11.95610 -11.61167 -11.58946 -11.48019 -10.82288 -10.63886 -10.31029 -9.98550 -9.81159 -9.31817 -8.44622 -5.92637 1.39474 1.43968 1.47143 1.55669 1.57599 2.09137 2.30548 2.69863 2.97092 3.23417 3.36712 3.46570 3.68705 3.75026 3.85643 3.92380 4.00815 4.04226 4.07524 4.10740 4.18222 4.26205 4.36120 4.38580 4.47853 4.60835 4.61986 4.62545 4.65465 4.70467 4.76376 4.78696 4.79772 4.91125 4.92146 4.95873 5.07368 5.11226 5.13464 5.28341 5.31389 5.32590 5.40235 5.43878 5.90826 6.11250 6.13901 6.35299 6.42511 6.62981 7.05379 7.15799 7.60161 8.15379 8.72601 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.002252 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.094489 B =12431.301189 C =14320.608805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 H 0.069 0.931 4 C -0.108 4.108 5 C 0.084 3.916 6 H 0.105 0.895 7 N -0.664 5.664 8 C 0.064 3.936 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.066 3.934 21 N -0.607 5.607 22 C 0.525 3.475 23 O -0.565 6.565 24 C 0.046 3.954 25 O -0.383 6.383 26 C 0.096 3.904 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.179 4.179 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.350 0.650 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.086 0.914 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 11.801 16.502 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.028 4.028 6 H 0.123 0.877 7 N -0.296 5.296 8 C -0.069 4.069 9 C 0.225 3.775 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.199 1.199 20 C -0.058 4.058 21 N -0.343 5.343 22 C 0.314 3.686 23 O -0.444 6.444 24 C -0.033 4.033 25 O -0.302 6.302 26 C 0.057 3.943 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.236 4.236 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.105 0.895 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.477 12.768 15.762 21.619 hybrid contribution 0.808 -1.033 0.498 1.403 sum -6.669 11.735 16.261 21.133 Atomic orbital electron populations 1.22084 0.94313 1.02444 1.02585 1.21660 0.95018 0.96176 0.84041 0.91326 1.22683 1.02621 0.93727 0.95627 1.22788 0.95442 0.95823 0.88698 0.87715 1.60090 1.07693 1.04002 1.57767 1.21627 0.97976 0.88628 0.98620 1.20923 0.88298 0.82326 0.85909 1.90508 1.46872 1.63064 1.50581 1.41935 1.29196 1.05525 1.44462 1.19637 1.09274 0.90572 1.26581 0.90356 1.25982 1.00359 0.96242 0.98639 1.69660 1.37346 1.06271 1.42830 0.84977 0.77911 0.77514 0.78266 1.19631 1.19756 1.19885 1.23370 0.95522 0.89097 0.97834 1.48445 1.50461 1.30944 1.04418 1.20418 0.80452 0.84790 0.82910 1.90683 1.39788 1.30326 1.83589 1.22253 1.00479 0.97257 0.83335 1.88055 1.74198 1.55126 1.12859 1.21851 0.93936 0.92294 0.86190 1.22447 0.94535 1.02882 1.03740 1.21786 1.01722 1.01110 0.94778 1.22448 1.02024 0.95372 1.03759 0.92080 0.93691 0.89863 0.90078 0.88422 0.82978 0.87570 0.90667 0.76906 0.91368 0.88661 0.90059 0.88297 0.88525 0.92359 0.89512 0.91771 0.92476 0.88710 0.92517 0.91726 0.89538 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 71.98 0.65 -2.34 16 2 C 0.13 2.60 3.49 45.34 0.16 2.76 16 3 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 4 C -0.11 -1.90 6.19 31.78 0.20 -1.70 16 5 C 0.08 1.52 3.38 46.31 0.16 1.68 16 6 H 0.10 1.76 7.83 -2.39 -0.02 1.74 16 7 N -0.66 -17.02 6.04 -488.40 -2.95 -19.97 16 8 C 0.06 1.83 6.03 85.56 0.52 2.34 16 9 C 0.44 19.12 7.82 87.66 0.69 19.80 16 10 O -0.62 -32.46 15.78 -3.07 -0.05 -32.51 16 11 N -0.57 -27.67 5.29 -306.98 -1.62 -29.30 16 12 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 13 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 14 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 15 N -0.92 -47.99 13.05 21.66 0.28 -47.70 16 16 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.07 1.06 6.29 86.86 0.55 1.61 16 21 N -0.61 -12.15 3.08 -788.07 -2.43 -14.58 16 22 C 0.53 12.88 7.71 87.66 0.68 13.55 16 23 O -0.57 -18.79 15.41 16.02 0.25 -18.54 16 24 C 0.05 0.86 4.62 71.23 0.33 1.19 16 25 O -0.38 -8.70 9.52 -129.94 -1.24 -9.94 16 26 C 0.10 1.48 1.14 -10.80 -0.01 1.47 16 27 C -0.18 -2.23 8.25 71.98 0.59 -1.63 16 28 C -0.14 -1.88 8.84 71.98 0.64 -1.24 16 29 C -0.18 -2.21 8.25 71.98 0.59 -1.62 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.10 6.78 -2.38 -0.02 1.08 16 32 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.10 1.57 7.83 -2.39 -0.02 1.55 16 35 H 0.35 9.42 7.89 -89.69 -0.71 8.71 16 36 H 0.11 2.74 8.09 -2.38 -0.02 2.72 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.40 18.05 7.90 -92.71 -0.73 17.32 16 39 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 40 H 0.10 1.19 7.48 -2.39 -0.02 1.17 16 41 H 0.08 1.26 7.75 -2.38 -0.02 1.24 16 42 H 0.10 1.44 6.13 -2.39 -0.01 1.42 16 43 H 0.10 1.45 6.41 -2.39 -0.02 1.43 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.74 6.54 -2.39 -0.02 0.73 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.06 0.73 6.54 -2.38 -0.02 0.72 16 51 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.88 415.61 0.76 -72.12 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.51 Total: 38.27 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 7.01 Total: 18.43 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -6.72 Total: -111.56 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.04 Total: -60.99 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.88 0.76 -72.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676724054.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.763 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds