Wall clock time and date at job start Wed Apr 1 2020 00:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 O 1.42907 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.42906 * 113.99801 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46755 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00071 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99546 * 180.02562 * 6 5 4 9 9 C 1.48144 * 127.84272 * 0.02562 * 8 6 5 10 10 C 1.54385 * 104.61907 * 140.39406 * 9 8 6 11 11 H 1.09004 * 110.34191 * 142.74386 * 10 9 8 12 12 N 1.46897 * 110.43309 * 264.94941 * 10 9 8 13 13 C 1.46901 * 111.00349 * 270.59039 * 12 10 9 14 14 C 1.50697 * 109.47381 * 179.97438 * 13 12 10 15 15 O 1.21300 * 119.99809 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00435 * 180.02562 * 14 13 12 17 17 C 1.37089 * 120.00061 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00775 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99708 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00200 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00183 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47014 * 59.99536 * 21 19 17 23 23 H 1.48493 * 109.47488 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46603 * 300.00259 * 21 19 17 25 25 C 1.54277 * 104.96161 * 23.87011 * 10 9 8 26 26 C 1.53002 * 110.34364 * 241.12814 * 25 10 9 27 27 C 1.53001 * 110.34653 * 118.87017 * 25 10 9 28 28 C 1.48151 * 127.83495 * 180.02562 * 8 6 5 29 29 H 1.09008 * 109.46538 * 299.99134 * 1 2 3 30 30 H 1.08999 * 109.47483 * 59.99250 * 1 2 3 31 31 H 1.09005 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46808 * 240.01057 * 2 1 3 33 33 H 1.08999 * 109.47483 * 120.00749 * 2 1 3 34 34 H 1.09008 * 109.46822 * 60.01040 * 3 2 1 35 35 H 1.08999 * 109.47668 * 300.00636 * 3 2 1 36 36 H 1.09005 * 109.46705 * 60.00199 * 5 4 3 37 37 H 1.08999 * 109.47011 * 299.99759 * 5 4 3 38 38 H 1.09004 * 110.40486 * 21.60818 * 9 8 6 39 39 H 1.09003 * 110.40712 * 259.18174 * 9 8 6 40 40 H 1.00899 * 111.00062 * 34.54325 * 12 10 9 41 41 H 1.08997 * 109.47284 * 300.00418 * 13 12 10 42 42 H 1.09006 * 109.46810 * 60.00369 * 13 12 10 43 43 H 0.96998 * 119.99284 * 0.02562 * 16 14 13 44 44 H 0.97000 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.47342 * 176.98652 * 26 25 10 46 46 H 1.09000 * 109.46937 * 296.99283 * 26 25 10 47 47 H 1.09001 * 109.46721 * 56.98802 * 26 25 10 48 48 H 1.09006 * 109.46640 * 303.00792 * 27 25 10 49 49 H 1.09001 * 109.47083 * 63.00447 * 27 25 10 50 50 H 1.09001 * 109.47528 * 183.01448 * 27 25 10 51 51 H 1.08992 * 110.40889 * 100.82013 * 28 8 6 52 52 H 1.09000 * 110.40506 * 338.38333 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0001 6 6 5.5525 2.6290 -0.0014 7 8 6.0741 1.5341 -0.0032 8 7 6.3164 3.7394 -0.0007 9 6 5.8677 5.1512 0.0020 10 6 6.8477 5.8698 0.9542 11 1 7.0742 6.8688 0.5816 12 7 6.2833 5.9468 2.3083 13 6 5.4890 7.1706 2.4788 14 6 4.9271 7.2142 3.8765 15 8 5.1654 6.3144 4.6542 16 7 4.1598 8.2529 4.2623 17 6 3.6491 8.2927 5.5339 18 1 3.8619 7.4920 6.2267 19 6 2.8577 9.3633 5.9315 20 7 2.5990 10.3379 5.0887 21 14 2.1623 9.4181 7.6645 22 1 3.2772 9.4122 8.6455 23 1 1.3586 10.6548 7.8366 24 1 1.2991 8.2307 7.8891 25 6 8.1187 4.9954 0.9518 26 6 8.4059 4.4704 2.3599 27 6 9.3132 5.7945 0.4270 28 6 7.7954 3.8249 -0.0023 29 1 -0.3633 0.5138 0.8902 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8902 35 1 1.6766 1.9564 -0.8899 36 1 3.7289 3.2884 0.8904 37 1 3.7282 3.2894 -0.8896 38 1 4.8478 5.2251 0.3795 39 1 5.9342 5.5730 -1.0010 40 1 5.7339 5.1269 2.5182 41 1 6.1235 8.0415 2.3146 42 1 4.6709 7.1761 1.7585 43 1 3.9690 8.9722 3.6402 44 1 2.0462 11.0851 5.3662 45 1 9.2744 3.8122 2.3323 46 1 8.6067 5.3092 3.0264 47 1 7.5411 3.9158 2.7242 48 1 9.0875 6.1726 -0.5702 49 1 9.5127 6.6314 1.0963 50 1 10.1903 5.1490 0.3808 51 1 8.1627 4.0398 -1.0057 52 1 8.2301 2.8981 0.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676985375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:40 Heat of formation + Delta-G solvation = -116.099906 kcal Electronic energy + Delta-G solvation = -30680.317598 eV Core-core repulsion = 26486.894959 eV Total energy + Delta-G solvation = -4193.422639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60511 -38.94352 -38.14438 -37.55232 -34.57198 -33.97409 -33.85857 -33.60420 -31.26468 -29.23524 -28.89297 -27.45426 -26.49377 -25.99559 -25.14016 -24.11241 -22.45163 -21.81879 -19.76444 -19.43101 -18.94295 -17.93300 -17.49404 -16.86919 -16.47915 -16.27179 -16.12217 -15.52924 -15.17710 -14.83737 -14.60195 -14.44555 -14.37886 -14.07470 -13.75093 -13.72718 -13.54275 -13.22067 -12.94234 -12.66813 -12.39464 -12.36271 -12.28987 -12.23831 -12.13302 -11.77321 -11.72112 -11.58512 -11.54951 -11.19915 -11.15096 -11.07707 -10.92978 -10.75930 -10.65668 -10.47496 -10.25236 -9.93592 -9.88248 -9.54249 -9.01255 -8.49308 -8.08978 -8.00242 -6.46090 -3.86960 2.42629 2.46982 3.17060 3.23201 3.27559 3.56672 3.85332 3.99550 4.18260 4.24305 4.37511 4.56818 4.67802 4.75886 4.86099 4.87113 4.90487 4.98585 5.04968 5.07507 5.11878 5.17852 5.19695 5.21114 5.23422 5.38173 5.44879 5.45529 5.48858 5.58825 5.67708 5.71591 5.74231 5.85805 5.88001 5.89321 5.95385 5.96511 6.00716 6.16517 6.23433 6.32284 6.66330 6.82331 7.15139 7.31681 7.51036 7.53264 8.01231 8.01705 8.56477 9.13628 9.49369 10.00776 10.71455 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.003074 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.260100 B = 9105.033216 C =12230.352688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.049 3.951 6 C 0.538 3.462 7 O -0.520 6.520 8 N -0.620 5.620 9 C 0.065 3.935 10 C 0.081 3.919 11 H 0.097 0.903 12 N -0.651 5.651 13 C 0.047 3.953 14 C 0.439 3.561 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.069 4.069 26 C -0.115 4.115 27 C -0.135 4.135 28 C 0.114 3.886 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.351 0.649 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -9.387 -16.201 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.031 4.031 6 C 0.326 3.674 7 O -0.395 6.395 8 N -0.357 5.357 9 C -0.060 4.060 10 C -0.031 4.031 11 H 0.115 0.885 12 N -0.283 5.283 13 C -0.085 4.085 14 C 0.224 3.776 15 O -0.466 6.466 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.173 4.173 27 C -0.193 4.193 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.171 0.829 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.195 -10.430 -15.346 19.023 hybrid contribution -1.606 0.858 -0.119 1.825 sum 2.589 -9.572 -15.465 18.371 Atomic orbital electron populations 1.21703 0.94608 1.02289 1.02134 1.21441 0.95657 0.95328 1.03594 1.22667 0.80261 0.98386 1.00489 1.87980 1.19755 1.25085 1.95468 1.22140 0.91288 0.87027 1.02655 1.19803 0.88195 0.83006 0.76419 1.90729 1.74467 1.25629 1.48659 1.48805 1.07686 1.05399 1.73776 1.23347 0.99744 0.81632 1.01265 1.22679 0.93504 0.98895 0.88016 0.88467 1.60242 1.40381 1.04849 1.22806 1.21765 0.96253 0.94062 0.96432 1.19791 0.83909 0.84846 0.89019 1.90543 1.62704 1.38742 1.54604 1.41852 1.44141 1.20161 1.13788 1.19648 1.27122 1.06926 0.89274 0.87989 1.25252 0.97446 0.95295 0.99837 1.69597 1.38731 1.10227 1.35774 0.85930 0.78973 0.77510 0.81898 1.19851 1.20959 1.19905 1.21562 0.94609 0.94137 0.96760 1.21522 1.00395 1.01068 0.94292 1.21824 0.96762 1.00020 1.00646 1.22548 0.79466 0.99637 0.99171 0.92323 0.92559 0.91967 0.91101 0.90883 0.92808 0.93192 0.90029 0.90459 0.90291 0.90325 0.82859 0.89393 0.94002 0.77495 0.91799 0.94011 0.90993 0.92475 0.92691 0.91661 0.92338 0.91117 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.10 6.30 -26.73 -0.17 -1.27 16 3 C 0.06 0.58 5.94 37.16 0.22 0.80 16 4 O -0.36 -4.86 9.88 -55.14 -0.54 -5.41 16 5 C 0.05 0.56 5.40 36.01 0.19 0.75 16 6 C 0.54 7.46 7.99 -10.98 -0.09 7.37 16 7 O -0.52 -9.35 16.77 -14.35 -0.24 -9.59 16 8 N -0.62 -7.06 3.32 -169.29 -0.56 -7.62 16 9 C 0.07 0.60 6.36 -2.41 -0.02 0.58 16 10 C 0.08 0.84 3.01 -66.32 -0.20 0.64 16 11 H 0.10 0.89 7.39 -51.93 -0.38 0.51 16 12 N -0.65 -9.31 4.15 -106.52 -0.44 -9.75 16 13 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 14 C 0.44 9.79 7.82 -10.99 -0.09 9.71 16 15 O -0.58 -15.24 15.78 5.54 0.09 -15.15 16 16 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 17 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 21 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.07 -0.70 1.03 -153.09 -0.16 -0.86 16 26 C -0.12 -1.43 7.44 37.16 0.28 -1.16 16 27 C -0.13 -1.09 8.24 37.16 0.31 -0.79 16 28 C 0.11 1.19 6.14 -2.39 -0.01 1.18 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.71 7.16 -51.93 -0.37 0.34 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.35 5.56 7.67 -39.29 -0.30 5.26 16 41 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 42 H 0.04 0.57 8.13 -51.93 -0.42 0.14 16 43 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 47 H 0.06 0.84 7.40 -51.93 -0.38 0.45 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.62 7.86 -51.93 -0.41 0.22 16 52 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 LS Contribution 422.29 15.07 6.36 6.36 Total: -1.00 -33.50 422.29 -8.57 -42.07 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -9.24 Total: 11.15 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.37 Total: 9.20 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.34 Total: -54.31 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.70 Total: -30.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.50 -8.57 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676985375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.029 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds