Wall clock time and date at job start Wed Apr 1 2020 00:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 O 1.42907 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.42906 * 113.99801 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46755 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00071 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99546 * 180.02562 * 6 5 4 9 9 C 1.48144 * 127.84272 * 0.02562 * 8 6 5 10 10 C 1.54385 * 104.61907 * 140.39406 * 9 8 6 11 11 H 1.09004 * 110.34191 * 142.74386 * 10 9 8 12 12 N 1.46897 * 110.43309 * 264.94941 * 10 9 8 13 13 C 1.46901 * 111.00349 * 270.59039 * 12 10 9 14 14 C 1.50697 * 109.47381 * 179.97438 * 13 12 10 15 15 O 1.21300 * 119.99809 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00435 * 180.02562 * 14 13 12 17 17 C 1.37089 * 120.00061 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00775 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99708 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00200 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00183 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47014 * 59.99536 * 21 19 17 23 23 H 1.48493 * 109.47488 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46603 * 300.00259 * 21 19 17 25 25 C 1.54277 * 104.96161 * 23.87011 * 10 9 8 26 26 C 1.53002 * 110.34364 * 241.12814 * 25 10 9 27 27 C 1.53001 * 110.34653 * 118.87017 * 25 10 9 28 28 C 1.48151 * 127.83495 * 180.02562 * 8 6 5 29 29 H 1.09008 * 109.46538 * 299.99134 * 1 2 3 30 30 H 1.08999 * 109.47483 * 59.99250 * 1 2 3 31 31 H 1.09005 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46808 * 240.01057 * 2 1 3 33 33 H 1.08999 * 109.47483 * 120.00749 * 2 1 3 34 34 H 1.09008 * 109.46822 * 60.01040 * 3 2 1 35 35 H 1.08999 * 109.47668 * 300.00636 * 3 2 1 36 36 H 1.09005 * 109.46705 * 60.00199 * 5 4 3 37 37 H 1.08999 * 109.47011 * 299.99759 * 5 4 3 38 38 H 1.09004 * 110.40486 * 21.60818 * 9 8 6 39 39 H 1.09003 * 110.40712 * 259.18174 * 9 8 6 40 40 H 1.00899 * 111.00062 * 34.54325 * 12 10 9 41 41 H 1.08997 * 109.47284 * 300.00418 * 13 12 10 42 42 H 1.09006 * 109.46810 * 60.00369 * 13 12 10 43 43 H 0.96998 * 119.99284 * 0.02562 * 16 14 13 44 44 H 0.97000 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.47342 * 176.98652 * 26 25 10 46 46 H 1.09000 * 109.46937 * 296.99283 * 26 25 10 47 47 H 1.09001 * 109.46721 * 56.98802 * 26 25 10 48 48 H 1.09006 * 109.46640 * 303.00792 * 27 25 10 49 49 H 1.09001 * 109.47083 * 63.00447 * 27 25 10 50 50 H 1.09001 * 109.47528 * 183.01448 * 27 25 10 51 51 H 1.08992 * 110.40889 * 100.82013 * 28 8 6 52 52 H 1.09000 * 110.40506 * 338.38333 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0001 6 6 5.5525 2.6290 -0.0014 7 8 6.0741 1.5341 -0.0032 8 7 6.3164 3.7394 -0.0007 9 6 5.8677 5.1512 0.0020 10 6 6.8477 5.8698 0.9542 11 1 7.0742 6.8688 0.5816 12 7 6.2833 5.9468 2.3083 13 6 5.4890 7.1706 2.4788 14 6 4.9271 7.2142 3.8765 15 8 5.1654 6.3144 4.6542 16 7 4.1598 8.2529 4.2623 17 6 3.6491 8.2927 5.5339 18 1 3.8619 7.4920 6.2267 19 6 2.8577 9.3633 5.9315 20 7 2.5990 10.3379 5.0887 21 14 2.1623 9.4181 7.6645 22 1 3.2772 9.4122 8.6455 23 1 1.3586 10.6548 7.8366 24 1 1.2991 8.2307 7.8891 25 6 8.1187 4.9954 0.9518 26 6 8.4059 4.4704 2.3599 27 6 9.3132 5.7945 0.4270 28 6 7.7954 3.8249 -0.0023 29 1 -0.3633 0.5138 0.8902 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8902 35 1 1.6766 1.9564 -0.8899 36 1 3.7289 3.2884 0.8904 37 1 3.7282 3.2894 -0.8896 38 1 4.8478 5.2251 0.3795 39 1 5.9342 5.5730 -1.0010 40 1 5.7339 5.1269 2.5182 41 1 6.1235 8.0415 2.3146 42 1 4.6709 7.1761 1.7585 43 1 3.9690 8.9722 3.6402 44 1 2.0462 11.0851 5.3662 45 1 9.2744 3.8122 2.3323 46 1 8.6067 5.3092 3.0264 47 1 7.5411 3.9158 2.7242 48 1 9.0875 6.1726 -0.5702 49 1 9.5127 6.6314 1.0963 50 1 10.1903 5.1490 0.3808 51 1 8.1627 4.0398 -1.0057 52 1 8.2301 2.8981 0.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676985375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:39 Heat of formation + Delta-G solvation = -139.309073 kcal Electronic energy + Delta-G solvation = -30681.324023 eV Core-core repulsion = 26486.894959 eV Total energy + Delta-G solvation = -4194.429064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54265 -40.17857 -39.61206 -38.55500 -36.11929 -35.35434 -34.76092 -34.52608 -33.22801 -30.18510 -29.89230 -28.42445 -27.43294 -27.22439 -25.96021 -25.65687 -23.40253 -22.52721 -21.15440 -20.56644 -20.05203 -19.79563 -18.44119 -17.77291 -17.73513 -17.35130 -17.08327 -16.71330 -16.47057 -16.20520 -15.98189 -15.63443 -15.36310 -15.21906 -15.14205 -14.62797 -14.46058 -14.31756 -14.05706 -13.76703 -13.49212 -13.37296 -13.20967 -13.12576 -13.08114 -13.03836 -12.92271 -12.82920 -12.60262 -12.48847 -12.42071 -12.13027 -11.90670 -11.84385 -11.80150 -11.64748 -11.53027 -11.48894 -10.94599 -10.77589 -10.31515 -9.99535 -9.93987 -9.16502 -8.45520 -5.93402 1.39641 1.42140 1.43413 1.52091 1.57498 2.09286 2.29632 2.76210 2.91803 3.22500 3.33737 3.46403 3.65079 3.71858 3.97139 3.99771 4.05314 4.10335 4.13389 4.15824 4.31459 4.36190 4.37875 4.40797 4.50740 4.52480 4.59127 4.64188 4.66204 4.71298 4.75236 4.80985 4.81557 4.95324 5.03448 5.11327 5.16930 5.18273 5.18923 5.31704 5.31985 5.42237 5.48912 5.58512 5.94438 6.01957 6.17725 6.32203 6.42548 6.63085 7.01532 7.15319 7.59923 8.16180 8.71426 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.003074 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.260100 B = 9105.033216 C =12230.352688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.397 6.397 5 C 0.050 3.950 6 C 0.529 3.471 7 O -0.575 6.575 8 N -0.618 5.618 9 C 0.067 3.933 10 C 0.081 3.919 11 H 0.124 0.876 12 N -0.667 5.667 13 C 0.064 3.936 14 C 0.436 3.564 15 O -0.627 6.627 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.987 3.013 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.063 4.063 26 C -0.110 4.110 27 C -0.129 4.129 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.339 0.661 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.026 0.974 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.098 0.902 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -7.625 -18.344 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.317 6.317 5 C -0.029 4.029 6 C 0.318 3.682 7 O -0.454 6.454 8 N -0.352 5.352 9 C -0.057 4.057 10 C -0.030 4.030 11 H 0.141 0.859 12 N -0.298 5.298 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.513 6.513 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.093 0.907 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.811 3.189 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.064 4.064 26 C -0.167 4.167 27 C -0.187 4.187 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.116 0.884 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.783 -8.606 -17.522 19.884 hybrid contribution -1.401 0.280 0.558 1.534 sum 2.382 -8.326 -16.964 19.046 Atomic orbital electron populations 1.21678 0.92912 1.03003 1.02639 1.21474 0.97074 0.94856 1.02741 1.22856 0.78796 0.99063 1.01502 1.87950 1.21570 1.26425 1.95722 1.22244 0.89554 0.86747 1.04354 1.20328 0.89375 0.82781 0.75681 1.90694 1.75531 1.27707 1.51506 1.48880 1.08101 1.05976 1.72246 1.23525 0.99476 0.79830 1.02841 1.22826 0.93412 1.00460 0.86272 0.85857 1.60205 1.40011 1.03711 1.25860 1.21633 0.97579 0.95495 0.92091 1.21015 0.82174 0.83113 0.91295 1.90519 1.63809 1.40152 1.56823 1.41906 1.44911 1.21088 1.13112 1.19572 1.29018 1.07103 0.90595 0.90682 1.25938 0.97178 0.94630 1.03211 1.69646 1.38841 1.10417 1.37018 0.85077 0.78256 0.77899 0.77656 1.19985 1.19431 1.19832 1.21523 0.95710 0.94212 0.94972 1.21432 0.99323 1.00149 0.95840 1.21790 0.95740 0.99516 1.01643 1.22643 0.79083 0.98709 1.00497 0.92327 0.91478 0.91208 0.91402 0.92344 0.92647 0.91147 0.89430 0.87222 0.89825 0.86671 0.84235 0.87156 0.90796 0.76852 0.91317 0.93379 0.92701 0.95479 0.90260 0.92126 0.91847 0.88407 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -2.21 6.30 30.59 0.19 -2.02 16 3 C 0.05 1.03 5.94 71.98 0.43 1.46 16 4 O -0.40 -10.63 9.88 -129.94 -1.28 -11.91 16 5 C 0.05 1.10 5.40 71.24 0.38 1.49 16 6 C 0.53 14.58 7.99 87.66 0.70 15.28 16 7 O -0.58 -21.48 16.77 16.02 0.27 -21.21 16 8 N -0.62 -13.07 3.32 -807.89 -2.68 -15.75 16 9 C 0.07 0.99 6.36 86.53 0.55 1.54 16 10 C 0.08 1.44 3.01 45.82 0.14 1.57 16 11 H 0.12 1.63 7.39 -2.38 -0.02 1.62 16 12 N -0.67 -18.14 4.15 -490.91 -2.04 -20.18 16 13 C 0.06 1.86 6.02 85.56 0.52 2.37 16 14 C 0.44 19.46 7.82 87.66 0.69 20.14 16 15 O -0.63 -33.74 15.78 -3.09 -0.05 -33.79 16 16 N -0.57 -27.93 5.29 -306.98 -1.62 -29.55 16 17 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 18 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 19 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 20 N -0.92 -48.04 13.05 21.66 0.28 -47.76 16 21 Si 0.99 42.24 29.55 68.60 2.03 44.27 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C -0.06 -1.14 1.03 -51.26 -0.05 -1.20 16 26 C -0.11 -2.77 7.44 71.98 0.54 -2.24 16 27 C -0.13 -1.69 8.24 71.98 0.59 -1.10 16 28 C 0.11 2.18 6.14 86.55 0.53 2.71 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.78 7.95 -2.38 -0.02 1.76 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.21 7.16 -2.39 -0.02 1.19 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.34 10.69 7.67 -89.69 -0.69 10.00 16 41 H 0.11 2.78 8.07 -2.39 -0.02 2.76 16 42 H 0.07 1.72 8.13 -2.38 -0.02 1.70 16 43 H 0.40 18.15 7.90 -92.71 -0.73 17.41 16 44 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 45 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.05 1.55 7.96 -2.39 -0.02 1.54 16 47 H 0.03 0.82 7.40 -2.39 -0.02 0.80 16 48 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.10 1.40 7.86 -2.39 -0.02 1.38 16 52 H 0.06 1.50 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -76.78 422.29 1.59 -75.18 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.51 Total: 39.53 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 7.20 Total: 21.17 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -6.06 Total: -113.24 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -1.06 Total: -66.91 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.78 1.59 -75.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676985375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.124 kcal (2) G-P(sol) polarization free energy of solvation -76.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds