Wall clock time and date at job start Wed Apr 1 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 O 1.42899 * 109.47557 * 179.97438 * 3 2 1 5 5 C 1.42899 * 114.00419 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47095 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.48142 * 127.83697 * 0.02562 * 8 6 5 10 10 C 1.54388 * 104.61829 * 219.58923 * 9 8 6 11 11 H 1.09003 * 110.34097 * 217.26393 * 10 9 8 12 12 N 1.46897 * 110.34279 * 95.00613 * 10 9 8 13 13 C 1.46906 * 111.00200 * 77.83994 * 12 10 9 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 10 15 15 O 1.21290 * 120.00003 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99962 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00251 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00059 * 359.97438 * 17 16 14 19 19 C 1.38955 * 120.00294 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99763 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47047 * 90.00179 * 21 19 17 23 23 H 1.48502 * 109.47217 * 209.99490 * 21 19 17 24 24 H 1.48496 * 109.47479 * 329.99830 * 21 19 17 25 25 C 1.54281 * 104.95866 * 336.13690 * 10 9 8 26 26 C 1.53004 * 110.34348 * 118.87119 * 25 10 9 27 27 C 1.53005 * 110.34086 * 241.02318 * 25 10 9 28 28 C 1.48142 * 127.83447 * 179.70465 * 8 6 5 29 29 H 1.08994 * 109.47240 * 300.00305 * 1 2 3 30 30 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46995 * 60.00240 * 1 2 3 32 32 H 1.09000 * 109.47260 * 120.00205 * 2 1 3 33 33 H 1.08994 * 109.47031 * 240.00451 * 2 1 3 34 34 H 1.09000 * 109.47218 * 300.00230 * 3 2 1 35 35 H 1.09004 * 109.47294 * 59.99726 * 3 2 1 36 36 H 1.09004 * 109.46332 * 299.99753 * 5 4 3 37 37 H 1.08991 * 109.47266 * 60.00068 * 5 4 3 38 38 H 1.09004 * 110.40872 * 338.37833 * 9 8 6 39 39 H 1.09002 * 110.40834 * 100.80476 * 9 8 6 40 40 H 1.00897 * 111.00560 * 201.79514 * 12 10 9 41 41 H 1.09005 * 109.46486 * 300.00082 * 13 12 10 42 42 H 1.09001 * 109.47131 * 59.99774 * 13 12 10 43 43 H 0.96998 * 120.00194 * 359.97438 * 16 14 13 44 44 H 0.96990 * 120.00016 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46985 * 66.13818 * 26 25 10 46 46 H 1.09001 * 109.46861 * 186.13414 * 26 25 10 47 47 H 1.08997 * 109.46836 * 306.13473 * 26 25 10 48 48 H 1.08999 * 109.47054 * 60.00171 * 27 25 10 49 49 H 1.09005 * 109.46945 * 180.02562 * 27 25 10 50 50 H 1.09001 * 109.47256 * 299.99905 * 27 25 10 51 51 H 1.09002 * 110.40488 * 259.19119 * 28 8 6 52 52 H 1.09002 * 110.41065 * 21.62433 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0012 6 6 5.5526 2.6291 0.0012 7 8 6.0741 1.5341 0.0012 8 7 6.3165 3.7394 0.0023 9 6 5.8677 5.1512 0.0041 10 6 6.8465 5.8725 -0.9474 11 1 7.0735 6.8704 -0.5722 12 7 6.2791 5.9511 -2.3001 13 6 5.2711 7.0162 -2.3871 14 6 4.7124 7.0660 -3.7858 15 8 5.1146 6.2909 -4.6275 16 7 3.7664 7.9726 -4.1017 17 6 3.2585 8.0183 -5.3742 18 1 3.6166 7.3281 -6.1237 19 6 2.2828 8.9527 -5.6997 20 7 1.7963 8.9968 -6.9197 21 14 1.6639 10.1469 -4.4036 22 1 2.4963 11.3765 -4.4257 23 1 0.2506 10.5008 -4.6911 24 1 1.7527 9.5130 -3.0637 25 6 8.1175 4.9980 -0.9490 26 6 8.4029 4.4769 -2.3590 27 6 9.3132 5.7966 -0.4259 28 6 7.7954 3.8249 0.0084 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.7289 3.2891 -0.8888 37 1 3.7283 3.2887 0.8912 38 1 4.8473 5.2262 -0.3720 39 1 5.9354 5.5703 1.0080 40 1 7.0041 6.0823 -2.9894 41 1 4.4656 6.8126 -1.6815 42 1 5.7325 7.9737 -2.1455 43 1 3.4450 8.5928 -3.4286 44 1 1.1156 9.6492 -7.1470 45 1 8.6574 5.3128 -3.0106 46 1 9.2367 3.7756 -2.3252 47 1 7.5181 3.9712 -2.7454 48 1 9.1111 6.1281 0.5926 49 1 10.2025 5.1662 -0.4335 50 1 9.4780 6.6643 -1.0646 51 1 8.1595 4.0401 1.0131 52 1 8.2313 2.8980 -0.3643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676985376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:44 Heat of formation + Delta-G solvation = -106.122985 kcal Electronic energy + Delta-G solvation = -30829.025370 eV Core-core repulsion = 26636.035362 eV Total energy + Delta-G solvation = -4192.990008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56196 -38.95940 -38.28744 -37.51434 -34.68223 -33.98515 -33.85637 -33.58697 -31.70430 -29.22933 -28.89271 -27.76484 -26.49159 -26.20073 -25.11589 -24.07746 -22.15704 -21.74264 -19.85779 -19.32269 -19.04284 -18.33264 -17.44637 -16.94456 -16.52215 -16.37217 -15.93398 -15.50439 -15.27437 -15.01590 -14.69128 -14.52790 -14.40111 -14.22850 -13.77407 -13.54501 -13.40060 -13.09882 -12.91560 -12.82512 -12.58205 -12.51286 -12.29131 -12.25104 -12.14798 -12.07262 -11.86259 -11.73826 -11.69102 -11.22761 -11.13593 -11.08561 -11.01093 -10.94574 -10.73616 -10.64499 -10.02058 -9.84158 -9.80984 -9.62273 -8.85796 -8.63246 -8.25457 -8.19999 -6.35394 -3.87147 2.50229 2.58977 2.97056 3.01683 3.10720 3.65210 3.68129 3.93385 4.05570 4.17484 4.28909 4.58379 4.70881 4.74409 4.83068 4.84013 4.94199 4.95796 5.04471 5.11526 5.12475 5.14803 5.23508 5.24836 5.30897 5.36187 5.37801 5.40110 5.51153 5.51360 5.55677 5.58993 5.70777 5.76674 5.76966 5.80439 5.83962 5.92128 5.93330 5.95989 6.00422 6.12623 6.42012 6.91403 7.03594 7.41117 7.47645 7.53447 8.09875 8.11340 8.54814 8.90545 9.37518 9.77405 10.77722 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006918 B = 0.003439 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4046.158113 B = 8139.345401 C =11296.576530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.366 6.366 5 C 0.049 3.951 6 C 0.543 3.457 7 O -0.525 6.525 8 N -0.614 5.614 9 C 0.105 3.895 10 C 0.078 3.922 11 H 0.060 0.940 12 N -0.659 5.659 13 C 0.044 3.956 14 C 0.449 3.551 15 O -0.563 6.563 16 N -0.590 5.590 17 C -0.306 4.306 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.077 4.077 26 C -0.137 4.137 27 C -0.139 4.139 28 C 0.120 3.880 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.358 0.642 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 -6.211 20.339 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.284 6.284 5 C -0.030 4.030 6 C 0.331 3.669 7 O -0.400 6.400 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.033 4.033 11 H 0.078 0.922 12 N -0.295 5.295 13 C -0.089 4.089 14 C 0.234 3.766 15 O -0.444 6.444 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.078 4.078 26 C -0.195 4.195 27 C -0.197 4.197 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.182 0.818 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.188 -8.022 19.686 22.140 hybrid contribution -0.385 2.364 0.886 2.554 sum 5.803 -5.658 20.572 22.111 Atomic orbital electron populations 1.21700 0.94657 1.02241 1.02130 1.21439 0.95620 0.95406 1.03548 1.22650 0.80356 0.98292 1.00465 1.87966 1.19675 1.25269 1.95483 1.22133 0.91243 0.86894 1.02768 1.19754 0.88203 0.82872 0.76086 1.90718 1.74528 1.25702 1.49038 1.48663 1.07201 1.05538 1.73592 1.22568 0.99879 0.80842 0.98606 1.22522 0.93002 0.97313 0.90483 0.92211 1.60308 1.18072 1.47442 1.03701 1.21785 0.96476 0.93225 0.97435 1.19672 0.83635 0.84032 0.89221 1.90581 1.61676 1.41932 1.50247 1.42204 1.36705 1.31980 1.12068 1.19428 1.19068 1.18350 0.86593 0.86291 1.25044 0.96879 0.97784 0.96439 1.69618 1.28543 1.35850 1.18002 0.86672 0.79624 0.81806 0.81253 1.19664 1.20163 1.19524 1.21689 0.94245 0.94855 0.96996 1.21767 1.02538 1.01047 0.94133 1.21885 0.97013 0.99861 1.00891 1.22486 0.80109 0.99048 0.98641 0.92597 0.92014 0.92298 0.91161 0.90886 0.92769 0.93288 0.89592 0.90640 0.89534 0.90687 0.81801 0.89729 0.93614 0.79744 0.91578 0.92336 0.92756 0.90325 0.92349 0.91989 0.92103 0.91077 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.16 6.30 -26.73 -0.17 -1.33 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 O -0.37 -5.11 9.88 -55.14 -0.54 -5.66 16 5 C 0.05 0.60 5.40 36.01 0.19 0.80 16 6 C 0.54 7.84 7.99 -10.98 -0.09 7.75 16 7 O -0.52 -9.67 16.76 -14.35 -0.24 -9.91 16 8 N -0.61 -7.19 3.31 -169.05 -0.56 -7.75 16 9 C 0.10 0.98 6.46 -2.41 -0.02 0.97 16 10 C 0.08 0.78 2.99 -66.32 -0.20 0.58 16 11 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 12 N -0.66 -9.05 4.92 -106.51 -0.52 -9.57 16 13 C 0.04 0.64 5.96 -4.98 -0.03 0.61 16 14 C 0.45 9.62 7.82 -10.99 -0.09 9.53 16 15 O -0.56 -14.57 15.78 5.55 0.09 -14.48 16 16 N -0.59 -13.43 5.09 -10.97 -0.06 -13.49 16 17 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 21 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 25 C -0.08 -0.71 1.03 -152.88 -0.16 -0.87 16 26 C -0.14 -1.53 7.19 37.16 0.27 -1.26 16 27 C -0.14 -0.98 8.26 37.16 0.31 -0.67 16 28 C 0.12 1.22 6.16 -2.19 -0.01 1.21 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.84 6.17 -51.93 -0.32 0.52 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.36 5.28 6.03 -39.29 -0.24 5.04 16 41 H 0.08 1.07 7.10 -51.93 -0.37 0.70 16 42 H 0.05 0.58 8.11 -51.93 -0.42 0.15 16 43 H 0.37 7.31 5.76 -40.82 -0.24 7.08 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 45 H 0.06 0.64 7.06 -51.93 -0.37 0.27 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.12 7.55 -51.93 -0.39 0.73 16 48 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 52 H 0.08 1.00 7.62 -51.93 -0.40 0.60 16 LS Contribution 415.52 15.07 6.26 6.26 Total: -1.00 -35.28 415.52 -8.16 -43.45 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -9.00 Total: 11.83 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 0.35 Total: 9.82 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.36 Total: -55.34 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.70 Total: -30.05 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.28 -8.16 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676985376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.677 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds