Wall clock time and date at job start Wed Apr 1 2020 00:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 O 1.42899 * 109.47557 * 179.97438 * 3 2 1 5 5 C 1.42899 * 114.00419 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47095 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.48142 * 127.83697 * 0.02562 * 8 6 5 10 10 C 1.54388 * 104.61829 * 219.58923 * 9 8 6 11 11 H 1.09003 * 110.34097 * 217.26393 * 10 9 8 12 12 N 1.46897 * 110.34279 * 95.00613 * 10 9 8 13 13 C 1.46906 * 111.00200 * 77.83994 * 12 10 9 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 10 15 15 O 1.21290 * 120.00003 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99962 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00251 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00059 * 359.97438 * 17 16 14 19 19 C 1.38955 * 120.00294 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99763 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47047 * 90.00179 * 21 19 17 23 23 H 1.48502 * 109.47217 * 209.99490 * 21 19 17 24 24 H 1.48496 * 109.47479 * 329.99830 * 21 19 17 25 25 C 1.54281 * 104.95866 * 336.13690 * 10 9 8 26 26 C 1.53004 * 110.34348 * 118.87119 * 25 10 9 27 27 C 1.53005 * 110.34086 * 241.02318 * 25 10 9 28 28 C 1.48142 * 127.83447 * 179.70465 * 8 6 5 29 29 H 1.08994 * 109.47240 * 300.00305 * 1 2 3 30 30 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46995 * 60.00240 * 1 2 3 32 32 H 1.09000 * 109.47260 * 120.00205 * 2 1 3 33 33 H 1.08994 * 109.47031 * 240.00451 * 2 1 3 34 34 H 1.09000 * 109.47218 * 300.00230 * 3 2 1 35 35 H 1.09004 * 109.47294 * 59.99726 * 3 2 1 36 36 H 1.09004 * 109.46332 * 299.99753 * 5 4 3 37 37 H 1.08991 * 109.47266 * 60.00068 * 5 4 3 38 38 H 1.09004 * 110.40872 * 338.37833 * 9 8 6 39 39 H 1.09002 * 110.40834 * 100.80476 * 9 8 6 40 40 H 1.00897 * 111.00560 * 201.79514 * 12 10 9 41 41 H 1.09005 * 109.46486 * 300.00082 * 13 12 10 42 42 H 1.09001 * 109.47131 * 59.99774 * 13 12 10 43 43 H 0.96998 * 120.00194 * 359.97438 * 16 14 13 44 44 H 0.96990 * 120.00016 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46985 * 66.13818 * 26 25 10 46 46 H 1.09001 * 109.46861 * 186.13414 * 26 25 10 47 47 H 1.08997 * 109.46836 * 306.13473 * 26 25 10 48 48 H 1.08999 * 109.47054 * 60.00171 * 27 25 10 49 49 H 1.09005 * 109.46945 * 180.02562 * 27 25 10 50 50 H 1.09001 * 109.47256 * 299.99905 * 27 25 10 51 51 H 1.09002 * 110.40488 * 259.19119 * 28 8 6 52 52 H 1.09002 * 110.41065 * 21.62433 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0012 6 6 5.5526 2.6291 0.0012 7 8 6.0741 1.5341 0.0012 8 7 6.3165 3.7394 0.0023 9 6 5.8677 5.1512 0.0041 10 6 6.8465 5.8725 -0.9474 11 1 7.0735 6.8704 -0.5722 12 7 6.2791 5.9511 -2.3001 13 6 5.2711 7.0162 -2.3871 14 6 4.7124 7.0660 -3.7858 15 8 5.1146 6.2909 -4.6275 16 7 3.7664 7.9726 -4.1017 17 6 3.2585 8.0183 -5.3742 18 1 3.6166 7.3281 -6.1237 19 6 2.2828 8.9527 -5.6997 20 7 1.7963 8.9968 -6.9197 21 14 1.6639 10.1469 -4.4036 22 1 2.4963 11.3765 -4.4257 23 1 0.2506 10.5008 -4.6911 24 1 1.7527 9.5130 -3.0637 25 6 8.1175 4.9980 -0.9490 26 6 8.4029 4.4769 -2.3590 27 6 9.3132 5.7966 -0.4259 28 6 7.7954 3.8249 0.0084 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.7289 3.2891 -0.8888 37 1 3.7283 3.2887 0.8912 38 1 4.8473 5.2262 -0.3720 39 1 5.9354 5.5703 1.0080 40 1 7.0041 6.0823 -2.9894 41 1 4.4656 6.8126 -1.6815 42 1 5.7325 7.9737 -2.1455 43 1 3.4450 8.5928 -3.4286 44 1 1.1156 9.6492 -7.1470 45 1 8.6574 5.3128 -3.0106 46 1 9.2367 3.7756 -2.3252 47 1 7.5181 3.9712 -2.7454 48 1 9.1111 6.1281 0.5926 49 1 10.2025 5.1662 -0.4335 50 1 9.4780 6.6643 -1.0646 51 1 8.1595 4.0401 1.0131 52 1 8.2313 2.8980 -0.3643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676985376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:43 Heat of formation + Delta-G solvation = -132.817628 kcal Electronic energy + Delta-G solvation = -30830.182936 eV Core-core repulsion = 26636.035362 eV Total energy + Delta-G solvation = -4194.147574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47715 -40.28979 -39.64170 -38.52737 -36.15822 -35.45108 -34.70742 -34.48759 -33.71262 -30.17811 -29.86882 -28.67511 -27.51960 -27.20877 -25.93387 -25.63502 -23.10227 -22.49870 -21.31346 -20.70427 -20.10898 -19.82618 -18.45420 -17.92438 -17.61709 -17.33095 -17.15919 -16.81068 -16.52915 -16.23653 -15.91566 -15.68725 -15.25427 -15.15285 -15.00378 -14.71613 -14.47199 -14.39588 -14.24961 -13.97221 -13.63582 -13.52197 -13.24139 -13.13257 -13.07197 -13.01116 -12.90529 -12.76074 -12.69239 -12.45070 -12.39400 -11.97582 -11.89612 -11.82453 -11.81009 -11.75391 -11.49755 -11.49032 -10.90371 -10.73439 -10.39555 -10.23087 -9.77025 -9.23122 -8.39534 -6.00771 1.31408 1.37768 1.46827 1.49944 1.66569 1.99626 2.25144 2.73982 2.82289 3.17399 3.34295 3.37462 3.57734 3.72176 3.99213 4.00589 4.05757 4.15965 4.18264 4.21166 4.22285 4.33803 4.38395 4.44872 4.51999 4.53265 4.59134 4.61344 4.67462 4.68661 4.75481 4.79998 4.83036 4.85162 5.01008 5.08765 5.12487 5.18588 5.20502 5.21200 5.33480 5.38316 5.49484 5.55508 5.93925 6.06344 6.13329 6.39144 6.48724 6.62091 6.90872 7.09052 7.42668 8.00632 8.78389 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006918 B = 0.003439 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4046.158113 B = 8139.345401 C =11296.576530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.399 6.399 5 C 0.052 3.948 6 C 0.531 3.469 7 O -0.581 6.581 8 N -0.613 5.613 9 C 0.101 3.899 10 C 0.079 3.921 11 H 0.094 0.906 12 N -0.682 5.682 13 C 0.059 3.941 14 C 0.447 3.553 15 O -0.617 6.617 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.051 0.949 19 C -0.017 4.017 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.226 1.226 25 C -0.069 4.069 26 C -0.134 4.134 27 C -0.132 4.132 28 C 0.116 3.884 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.349 0.651 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.278 0.722 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 -3.225 25.125 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.318 6.318 5 C -0.027 4.027 6 C 0.320 3.680 7 O -0.461 6.461 8 N -0.346 5.346 9 C -0.022 4.022 10 C -0.031 4.031 11 H 0.112 0.888 12 N -0.318 5.318 13 C -0.073 4.073 14 C 0.235 3.765 15 O -0.501 6.501 16 N -0.232 5.232 17 C -0.458 4.458 18 H 0.069 0.931 19 C -0.216 4.216 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.182 1.182 23 H -0.204 1.204 24 H -0.149 1.149 25 C -0.070 4.070 26 C -0.191 4.191 27 C -0.190 4.190 28 C -0.007 4.007 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.118 0.882 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.949 -5.000 24.511 25.713 hybrid contribution -0.197 1.328 -0.730 1.528 sum 5.752 -3.672 23.781 24.740 Atomic orbital electron populations 1.21674 0.92908 1.02985 1.02640 1.21474 0.97083 0.94905 1.02688 1.22839 0.78878 0.98996 1.01450 1.87938 1.21519 1.26636 1.95724 1.22225 0.89671 0.86563 1.04281 1.20279 0.89374 0.82785 0.75526 1.90680 1.75590 1.27847 1.51951 1.48771 1.07848 1.06150 1.71873 1.22891 0.99607 0.79040 1.00612 1.22688 0.92956 0.99029 0.88460 0.88825 1.60303 1.18261 1.47564 1.05657 1.21721 0.97673 0.95515 0.92403 1.21097 0.81867 0.81847 0.91643 1.90566 1.62946 1.43704 1.52932 1.42011 1.37362 1.33206 1.10660 1.18980 1.20621 1.18266 0.87903 0.93086 1.26165 0.96232 0.99728 0.99450 1.69816 1.29480 1.37297 1.21219 0.85341 0.78378 0.78519 0.79104 1.18161 1.20367 1.14854 1.21649 0.95435 0.94689 0.95229 1.21691 1.00812 1.00819 0.95797 1.21848 0.95701 0.99462 1.01987 1.22653 0.79403 0.98358 1.00255 0.91340 0.91219 0.92459 0.91292 0.92537 0.92920 0.90963 0.89700 0.87031 0.89557 0.86565 0.82873 0.86487 0.89846 0.77368 0.91226 0.92352 0.92370 0.94260 0.90110 0.91688 0.91838 0.88208 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.34 6.30 30.60 0.19 -2.15 16 3 C 0.05 1.11 5.94 71.98 0.43 1.53 16 4 O -0.40 -11.22 9.88 -129.94 -1.28 -12.50 16 5 C 0.05 1.21 5.40 71.24 0.38 1.59 16 6 C 0.53 15.25 7.99 87.66 0.70 15.95 16 7 O -0.58 -22.33 16.76 16.02 0.27 -22.07 16 8 N -0.61 -13.22 3.31 -807.14 -2.67 -15.89 16 9 C 0.10 1.45 6.46 86.54 0.56 2.01 16 10 C 0.08 1.25 2.99 45.82 0.14 1.39 16 11 H 0.09 0.97 7.58 -2.39 -0.02 0.95 16 12 N -0.68 -17.27 4.92 -490.89 -2.41 -19.68 16 13 C 0.06 1.51 5.96 85.55 0.51 2.02 16 14 C 0.45 18.92 7.82 87.66 0.69 19.60 16 15 O -0.62 -33.33 15.78 -3.06 -0.05 -33.38 16 16 N -0.59 -26.34 5.09 -307.00 -1.56 -27.90 16 17 C -0.33 -18.82 10.16 84.04 0.85 -17.97 16 18 H 0.05 3.54 7.39 -2.91 -0.02 3.52 16 19 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 20 N -0.94 -55.98 13.96 21.66 0.30 -55.68 16 21 Si 0.97 37.10 27.74 68.60 1.90 39.00 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.23 -6.99 6.52 99.48 0.65 -6.34 16 25 C -0.07 -1.11 1.03 -51.13 -0.05 -1.17 16 26 C -0.13 -3.00 7.19 71.98 0.52 -2.48 16 27 C -0.13 -1.35 8.26 71.98 0.59 -0.76 16 28 C 0.12 2.15 6.16 86.68 0.53 2.69 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.09 1.95 7.95 -2.38 -0.02 1.93 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.29 6.17 -2.38 -0.01 1.27 16 39 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.35 10.02 6.03 -89.70 -0.54 9.48 16 41 H 0.12 2.32 7.10 -2.38 -0.02 2.30 16 42 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 43 H 0.39 14.00 5.76 -92.71 -0.53 13.47 16 44 H 0.28 15.18 8.31 -92.72 -0.77 14.41 16 45 H 0.06 1.28 7.06 -2.39 -0.02 1.26 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 1.18 7.55 -2.39 -0.02 1.16 16 48 H 0.08 0.51 8.10 -2.39 -0.02 0.50 16 49 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.10 1.32 7.84 -2.39 -0.02 1.30 16 52 H 0.06 1.42 7.62 -2.39 -0.02 1.40 16 Total: -1.00 -87.62 415.52 1.50 -86.12 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.22 Total: 41.51 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 7.23 Total: 20.47 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.35 Total: -119.16 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -1.06 Total: -67.94 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.90 Total: 39.00 kcal Total: -87.62 1.50 -86.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676985376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.700 kcal (2) G-P(sol) polarization free energy of solvation -87.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds