Wall clock time and date at job start Wed Apr 1 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47596 * 2 1 4 4 C 1.50696 * 109.47313 * 120.00698 * 2 1 3 5 5 O 1.21281 * 120.00234 * 111.16250 * 4 2 1 6 6 N 1.34778 * 119.99923 * 291.16407 * 4 2 1 7 7 C 1.46503 * 119.99644 * 354.43812 * 6 4 2 8 8 C 1.46500 * 120.00373 * 174.43591 * 6 4 2 9 9 C 1.53000 * 109.46988 * 89.99795 * 8 6 4 10 10 H 1.09004 * 109.46970 * 60.00311 * 9 8 6 11 11 O 1.42903 * 109.47169 * 300.00555 * 9 8 6 12 12 C 1.52999 * 109.47263 * 180.02562 * 9 8 6 13 13 N 1.46900 * 109.47278 * 176.60310 * 12 9 8 14 14 C 1.46897 * 111.00028 * 200.24041 * 13 12 9 15 15 C 1.46899 * 111.00145 * 76.28280 * 13 12 9 16 16 C 1.50694 * 109.47380 * 190.00057 * 15 13 12 17 17 O 1.21296 * 119.99927 * 359.97438 * 16 15 13 18 18 N 1.34777 * 120.00408 * 180.02562 * 16 15 13 19 19 C 1.37093 * 120.00252 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99734 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99698 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46965 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47366 * 119.99688 * 23 21 19 26 26 H 1.48505 * 109.46813 * 239.99852 * 23 21 19 27 27 C 1.53004 * 109.46645 * 240.00259 * 2 1 3 28 28 C 1.53007 * 117.49836 * 128.62486 * 27 2 1 29 29 C 1.52997 * 59.99810 * 252.50931 * 28 27 2 30 30 H 1.09005 * 109.46828 * 50.19194 * 1 2 3 31 31 H 1.08995 * 109.47328 * 170.19828 * 1 2 3 32 32 H 1.08999 * 109.46566 * 290.19949 * 1 2 3 33 33 H 1.08998 * 109.46779 * 267.67121 * 7 6 4 34 34 H 1.08998 * 109.47177 * 27.67609 * 7 6 4 35 35 H 1.09005 * 109.46967 * 147.67345 * 7 6 4 36 36 H 1.09004 * 109.47011 * 330.00131 * 8 6 4 37 37 H 1.08990 * 109.47422 * 210.00141 * 8 6 4 38 38 H 0.96698 * 113.99665 * 299.99624 * 11 9 8 39 39 H 1.09001 * 109.46583 * 56.60265 * 12 9 8 40 40 H 1.08998 * 109.46798 * 296.60114 * 12 9 8 41 41 H 1.08999 * 109.46975 * 289.88902 * 14 13 12 42 42 H 1.09006 * 109.47292 * 49.88874 * 14 13 12 43 43 H 1.08995 * 109.47322 * 169.88586 * 14 13 12 44 44 H 1.09001 * 109.47026 * 310.00793 * 15 13 12 45 45 H 1.09002 * 109.46351 * 70.00097 * 15 13 12 46 46 H 0.97006 * 119.99172 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00025 * 179.97438 * 22 21 19 48 48 H 1.09000 * 115.55325 * 274.32985 * 27 2 1 49 49 H 1.08999 * 117.49401 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.49814 * 145.01885 * 28 27 2 51 51 H 1.09005 * 117.49706 * 252.50882 * 29 28 27 52 52 H 1.09003 * 117.50033 * 107.49390 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5921 -1.7814 1.1262 6 7 1.8597 -0.1559 2.4465 7 6 1.2945 1.1906 2.5639 8 6 2.2372 -0.8995 3.6510 9 6 3.6951 -0.5957 4.0020 10 1 3.8099 0.4730 4.1838 11 8 4.5379 -0.9874 2.9166 12 6 4.0895 -1.3727 5.2596 13 7 5.5114 -1.1449 5.5501 14 6 6.0471 -2.2017 6.4186 15 6 5.7213 0.1819 6.1446 16 6 7.1976 0.4789 6.2017 17 8 7.9964 -0.3349 5.7884 18 7 7.6305 1.6484 6.7131 19 6 8.9735 1.9187 6.7646 20 1 9.6847 1.1948 6.3950 21 6 9.4197 3.1242 7.2923 22 7 8.5544 4.0053 7.7415 23 14 11.2497 3.4930 7.3618 24 1 12.0072 2.3474 6.7969 25 1 11.5386 4.7162 6.5710 26 1 11.6580 3.7081 8.7733 27 6 2.0399 -0.7212 -1.2493 28 6 3.0741 0.0052 -2.1118 29 6 1.6357 -0.1494 -2.6096 30 1 -0.3633 0.6580 -0.7895 31 1 -0.3634 -1.0126 -0.1749 32 1 -0.3632 0.3549 0.9645 33 1 2.1017 1.9227 2.5860 34 1 0.6474 1.3887 1.7095 35 1 0.7140 1.2620 3.4837 36 1 2.1224 -1.9681 3.4692 37 1 1.5943 -0.6007 4.4789 38 1 4.4870 -1.9282 2.6988 39 1 3.9176 -2.4368 5.0979 40 1 3.4874 -1.0310 6.1015 41 1 5.6239 -2.1000 7.4179 42 1 5.7828 -3.1769 6.0096 43 1 7.1320 -2.1124 6.4726 44 1 5.2222 0.9358 5.5358 45 1 5.3082 0.1975 7.1532 46 1 6.9916 2.2990 7.0440 47 1 8.8659 4.8467 8.1103 48 1 2.1266 -1.8045 -1.1644 49 1 3.3909 0.9970 -1.7893 50 1 3.8415 -0.6001 -2.5943 51 1 1.4567 -0.8564 -3.4198 52 1 1.0064 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677152377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:37 Heat of formation + Delta-G solvation = -81.869865 kcal Electronic energy + Delta-G solvation = -30717.762833 eV Core-core repulsion = 26525.824520 eV Total energy + Delta-G solvation = -4191.938313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50989 -38.79240 -37.89895 -37.10684 -35.76363 -35.11802 -33.75851 -32.59430 -31.18784 -30.33299 -27.98299 -27.43171 -26.49356 -25.02754 -24.57690 -22.80954 -22.48285 -21.17780 -20.85385 -19.19419 -19.09850 -17.80468 -17.49460 -16.91624 -16.30571 -16.06345 -15.64429 -15.32025 -15.12013 -14.97529 -14.56688 -14.44322 -14.33374 -13.96528 -13.83796 -13.62565 -13.50289 -13.34172 -13.10964 -12.73512 -12.58157 -12.30884 -12.12767 -12.01078 -11.88200 -11.67226 -11.64153 -11.45881 -11.29647 -11.26534 -11.21709 -10.99529 -10.74752 -10.58295 -10.30668 -10.25361 -10.17811 -10.05867 -9.72659 -9.43884 -8.71564 -8.34776 -7.91880 -7.73573 -6.37221 -3.77350 2.52409 2.75513 3.19492 3.29556 3.37393 3.57032 3.96385 4.01185 4.19953 4.27029 4.29731 4.61459 4.63164 4.71553 4.77854 4.84268 4.90586 4.98605 5.04613 5.10123 5.11256 5.19820 5.22707 5.26916 5.31889 5.33095 5.36127 5.42073 5.45989 5.53844 5.60454 5.68856 5.69538 5.78093 5.80103 5.89195 5.94182 6.04401 6.07903 6.09107 6.26520 6.34359 6.61269 7.18511 7.33122 7.44807 7.60142 8.01695 8.10880 8.12544 8.67892 9.23826 9.60249 10.13038 10.80944 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.002260 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.998294 B =12387.230698 C =13168.742015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.094 0.906 4 C 0.529 3.471 5 O -0.529 6.529 6 N -0.611 5.611 7 C 0.066 3.934 8 C 0.084 3.916 9 C 0.098 3.902 10 H 0.093 0.907 11 O -0.531 6.531 12 C 0.023 3.977 13 N -0.506 5.506 14 C 0.024 3.976 15 C 0.047 3.953 16 C 0.448 3.552 17 O -0.574 6.574 18 N -0.568 5.568 19 C -0.295 4.295 20 H 0.103 0.897 21 C 0.020 3.980 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.135 4.135 28 C -0.176 4.176 29 C -0.180 4.180 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.373 0.627 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.013 0.987 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.117 0.883 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.698 -5.670 -12.060 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.112 0.888 4 C 0.317 3.683 5 O -0.405 6.405 6 N -0.344 5.344 7 C -0.077 4.077 8 C -0.040 4.040 9 C 0.037 3.963 10 H 0.111 0.889 11 O -0.335 6.335 12 C -0.106 4.106 13 N -0.229 5.229 14 C -0.123 4.123 15 C -0.084 4.084 16 C 0.233 3.767 17 O -0.457 6.457 18 N -0.205 5.205 19 C -0.424 4.424 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.546 5.546 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.154 4.154 28 C -0.213 4.213 29 C -0.217 4.217 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.220 0.780 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.112 0.888 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.402 -6.000 -12.745 25.622 hybrid contribution -0.170 0.414 1.281 1.357 sum -21.572 -5.586 -11.464 25.060 Atomic orbital electron populations 1.21872 0.92713 1.03170 1.02505 1.20836 0.97125 1.00068 0.92053 0.88837 1.20382 0.78281 0.85633 0.84011 1.90631 1.41336 1.22675 1.85835 1.47612 1.63698 1.17195 1.05925 1.22066 0.98967 0.83342 1.03323 1.22239 0.96864 0.97922 0.86950 1.22229 0.87876 0.99587 0.86631 0.88892 1.86630 1.65683 1.30346 1.50884 1.22817 0.89957 1.00625 0.97238 1.61429 1.13600 1.01592 1.46321 1.22555 1.03690 0.93249 0.92830 1.21909 0.97095 0.91781 0.97637 1.19723 0.89182 0.83882 0.83929 1.90484 1.56056 1.47672 1.51535 1.41865 1.08322 1.15712 1.54580 1.19747 0.82862 1.02110 1.37708 0.87905 1.25246 1.00126 0.95616 0.97098 1.69620 1.34344 1.08783 1.41878 0.85812 0.82371 0.78490 0.77753 1.19228 1.20779 1.20842 1.22056 1.03609 1.00170 0.89521 1.23018 0.92444 1.02025 1.03791 1.22962 0.98429 1.03148 0.97128 0.91380 0.91771 0.91594 0.92227 0.90098 0.91028 0.89723 0.89935 0.78018 0.90651 0.94315 0.96833 0.92478 0.88505 0.89720 0.93743 0.77613 0.92035 0.86495 0.88798 0.88643 0.88786 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.42 37.16 0.31 -0.56 16 2 C -0.08 -0.68 2.03 -91.77 -0.19 -0.86 16 3 H 0.09 0.73 7.34 -51.93 -0.38 0.35 16 4 C 0.53 5.98 6.52 -10.99 -0.07 5.91 16 5 O -0.53 -7.69 13.69 -8.59 -0.12 -7.81 16 6 N -0.61 -5.86 2.83 -181.57 -0.51 -6.37 16 7 C 0.07 0.43 9.81 59.85 0.59 1.02 16 8 C 0.08 0.81 5.18 -4.04 -0.02 0.78 16 9 C 0.10 1.24 3.28 -26.73 -0.09 1.15 16 10 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 11 O -0.53 -8.59 11.83 -49.37 -0.58 -9.18 16 12 C 0.02 0.30 4.69 -3.82 -0.02 0.28 16 13 N -0.51 -8.80 4.23 -244.38 -1.03 -9.83 16 14 C 0.02 0.41 9.19 60.06 0.55 0.97 16 15 C 0.05 0.88 5.27 -4.98 -0.03 0.85 16 16 C 0.45 10.98 7.54 -10.99 -0.08 10.89 16 17 O -0.57 -16.06 13.88 5.54 0.08 -15.99 16 18 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 19 C -0.29 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 22 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 23 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.14 -1.26 4.82 -90.62 -0.44 -1.69 16 28 C -0.18 -1.58 10.18 -26.73 -0.27 -1.85 16 29 C -0.18 -1.30 9.84 -26.73 -0.26 -1.57 16 30 H 0.07 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 0.33 5.76 -51.93 -0.30 0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.39 4.36 -51.93 -0.23 0.16 16 35 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 36 H 0.08 0.86 7.51 -51.93 -0.39 0.47 16 37 H 0.08 0.59 7.91 -51.93 -0.41 0.17 16 38 H 0.37 5.58 8.30 45.56 0.38 5.96 16 39 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 40 H 0.04 0.43 7.99 -51.93 -0.41 0.02 16 41 H 0.01 0.21 8.06 -51.93 -0.42 -0.21 16 42 H 0.06 0.82 7.82 -51.93 -0.41 0.42 16 43 H 0.10 1.99 6.01 -51.93 -0.31 1.68 16 44 H 0.08 1.47 6.72 -51.93 -0.35 1.12 16 45 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 48 H 0.12 1.29 7.36 -51.93 -0.38 0.91 16 49 H 0.09 0.82 8.05 -51.93 -0.42 0.41 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.09 0.56 7.75 -51.93 -0.40 0.16 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -35.06 412.74 -8.51 -43.56 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -7.94 Total: 14.80 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.25 Total: 7.23 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.88 Total: -55.30 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.62 Total: -32.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.06 -8.51 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677152377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.306 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds