Wall clock time and date at job start Wed Apr 1 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47596 * 2 1 4 4 C 1.50696 * 109.47313 * 120.00698 * 2 1 3 5 5 O 1.21281 * 120.00234 * 111.16250 * 4 2 1 6 6 N 1.34778 * 119.99923 * 291.16407 * 4 2 1 7 7 C 1.46503 * 119.99644 * 354.43812 * 6 4 2 8 8 C 1.46500 * 120.00373 * 174.43591 * 6 4 2 9 9 C 1.53000 * 109.46988 * 89.99795 * 8 6 4 10 10 H 1.09004 * 109.46970 * 60.00311 * 9 8 6 11 11 O 1.42903 * 109.47169 * 300.00555 * 9 8 6 12 12 C 1.52999 * 109.47263 * 180.02562 * 9 8 6 13 13 N 1.46900 * 109.47278 * 176.60310 * 12 9 8 14 14 C 1.46897 * 111.00028 * 200.24041 * 13 12 9 15 15 C 1.46899 * 111.00145 * 76.28280 * 13 12 9 16 16 C 1.50694 * 109.47380 * 190.00057 * 15 13 12 17 17 O 1.21296 * 119.99927 * 359.97438 * 16 15 13 18 18 N 1.34777 * 120.00408 * 180.02562 * 16 15 13 19 19 C 1.37093 * 120.00252 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99734 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99698 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46965 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47366 * 119.99688 * 23 21 19 26 26 H 1.48505 * 109.46813 * 239.99852 * 23 21 19 27 27 C 1.53004 * 109.46645 * 240.00259 * 2 1 3 28 28 C 1.53007 * 117.49836 * 128.62486 * 27 2 1 29 29 C 1.52997 * 59.99810 * 252.50931 * 28 27 2 30 30 H 1.09005 * 109.46828 * 50.19194 * 1 2 3 31 31 H 1.08995 * 109.47328 * 170.19828 * 1 2 3 32 32 H 1.08999 * 109.46566 * 290.19949 * 1 2 3 33 33 H 1.08998 * 109.46779 * 267.67121 * 7 6 4 34 34 H 1.08998 * 109.47177 * 27.67609 * 7 6 4 35 35 H 1.09005 * 109.46967 * 147.67345 * 7 6 4 36 36 H 1.09004 * 109.47011 * 330.00131 * 8 6 4 37 37 H 1.08990 * 109.47422 * 210.00141 * 8 6 4 38 38 H 0.96698 * 113.99665 * 299.99624 * 11 9 8 39 39 H 1.09001 * 109.46583 * 56.60265 * 12 9 8 40 40 H 1.08998 * 109.46798 * 296.60114 * 12 9 8 41 41 H 1.08999 * 109.46975 * 289.88902 * 14 13 12 42 42 H 1.09006 * 109.47292 * 49.88874 * 14 13 12 43 43 H 1.08995 * 109.47322 * 169.88586 * 14 13 12 44 44 H 1.09001 * 109.47026 * 310.00793 * 15 13 12 45 45 H 1.09002 * 109.46351 * 70.00097 * 15 13 12 46 46 H 0.97006 * 119.99172 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00025 * 179.97438 * 22 21 19 48 48 H 1.09000 * 115.55325 * 274.32985 * 27 2 1 49 49 H 1.08999 * 117.49401 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.49814 * 145.01885 * 28 27 2 51 51 H 1.09005 * 117.49706 * 252.50882 * 29 28 27 52 52 H 1.09003 * 117.50033 * 107.49390 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5921 -1.7814 1.1262 6 7 1.8597 -0.1559 2.4465 7 6 1.2945 1.1906 2.5639 8 6 2.2372 -0.8995 3.6510 9 6 3.6951 -0.5957 4.0020 10 1 3.8099 0.4730 4.1838 11 8 4.5379 -0.9874 2.9166 12 6 4.0895 -1.3727 5.2596 13 7 5.5114 -1.1449 5.5501 14 6 6.0471 -2.2017 6.4186 15 6 5.7213 0.1819 6.1446 16 6 7.1976 0.4789 6.2017 17 8 7.9964 -0.3349 5.7884 18 7 7.6305 1.6484 6.7131 19 6 8.9735 1.9187 6.7646 20 1 9.6847 1.1948 6.3950 21 6 9.4197 3.1242 7.2923 22 7 8.5544 4.0053 7.7415 23 14 11.2497 3.4930 7.3618 24 1 12.0072 2.3474 6.7969 25 1 11.5386 4.7162 6.5710 26 1 11.6580 3.7081 8.7733 27 6 2.0399 -0.7212 -1.2493 28 6 3.0741 0.0052 -2.1118 29 6 1.6357 -0.1494 -2.6096 30 1 -0.3633 0.6580 -0.7895 31 1 -0.3634 -1.0126 -0.1749 32 1 -0.3632 0.3549 0.9645 33 1 2.1017 1.9227 2.5860 34 1 0.6474 1.3887 1.7095 35 1 0.7140 1.2620 3.4837 36 1 2.1224 -1.9681 3.4692 37 1 1.5943 -0.6007 4.4789 38 1 4.4870 -1.9282 2.6988 39 1 3.9176 -2.4368 5.0979 40 1 3.4874 -1.0310 6.1015 41 1 5.6239 -2.1000 7.4179 42 1 5.7828 -3.1769 6.0096 43 1 7.1320 -2.1124 6.4726 44 1 5.2222 0.9358 5.5358 45 1 5.3082 0.1975 7.1532 46 1 6.9916 2.2990 7.0440 47 1 8.8659 4.8467 8.1103 48 1 2.1266 -1.8045 -1.1644 49 1 3.3909 0.9970 -1.7893 50 1 3.8415 -0.6001 -2.5943 51 1 1.4567 -0.8564 -3.4198 52 1 1.0064 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677152377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:36 Heat of formation + Delta-G solvation = -108.223792 kcal Electronic energy + Delta-G solvation = -30718.905625 eV Core-core repulsion = 26525.824520 eV Total energy + Delta-G solvation = -4193.081105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30455 -40.41679 -39.05198 -38.07697 -36.91901 -36.18751 -35.77639 -33.28294 -33.26735 -31.30814 -29.57021 -28.20225 -27.30894 -26.62070 -25.59624 -23.95116 -23.13989 -22.39386 -21.59800 -20.95076 -19.92484 -19.86240 -18.32562 -17.96773 -17.57770 -17.19353 -16.76961 -16.68649 -16.38295 -16.11259 -15.86622 -15.68455 -15.37483 -15.19259 -15.07830 -14.97474 -14.47360 -14.42352 -13.97708 -13.76806 -13.63206 -13.44611 -13.26697 -13.05612 -12.97924 -12.83056 -12.72389 -12.62192 -12.52404 -12.43977 -12.40755 -12.28269 -12.13354 -11.87554 -11.82057 -11.47750 -11.26697 -11.12190 -10.90658 -10.56252 -10.26929 -10.00183 -9.50899 -9.09228 -8.47028 -5.95260 1.35377 1.40175 1.54612 1.71205 2.05178 2.05699 2.28327 2.77695 2.92218 3.19468 3.35960 3.54357 3.65467 3.72941 3.79878 3.98751 4.07905 4.13837 4.18662 4.24516 4.31926 4.32597 4.37896 4.41536 4.48567 4.50487 4.54932 4.56304 4.64118 4.66452 4.72413 4.74513 4.78237 4.83517 4.93388 5.00017 5.06145 5.11443 5.19144 5.25083 5.30338 5.39795 5.40826 5.57347 5.88755 6.08513 6.24055 6.44715 6.61373 6.94301 7.13560 7.28272 7.56479 8.13676 8.70843 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.002260 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.998294 B =12387.230698 C =13168.742015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 H 0.102 0.898 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.611 5.611 7 C 0.059 3.941 8 C 0.090 3.910 9 C 0.097 3.903 10 H 0.084 0.916 11 O -0.561 6.561 12 C 0.028 3.972 13 N -0.533 5.533 14 C 0.030 3.970 15 C 0.062 3.938 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.269 1.269 27 C -0.150 4.150 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.373 0.627 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.266 -4.372 -11.704 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.120 0.880 4 C 0.306 3.694 5 O -0.451 6.451 6 N -0.343 5.343 7 C -0.082 4.082 8 C -0.034 4.034 9 C 0.036 3.964 10 H 0.101 0.899 11 O -0.366 6.366 12 C -0.100 4.100 13 N -0.257 5.257 14 C -0.118 4.118 15 C -0.070 4.070 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.194 1.194 27 C -0.169 4.169 28 C -0.230 4.230 29 C -0.191 4.191 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.221 0.779 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.105 0.895 51 H 0.120 0.880 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.024 -4.666 -12.368 27.421 hybrid contribution 0.622 -0.015 1.159 1.315 sum -23.402 -4.681 -11.210 26.367 Atomic orbital electron populations 1.21866 0.90492 1.03237 1.04035 1.20860 0.98831 0.99710 0.90213 0.87970 1.20991 0.77733 0.85359 0.85292 1.90607 1.43285 1.24634 1.86564 1.47755 1.62976 1.18174 1.05408 1.22300 0.99127 0.81310 1.05493 1.22179 0.95275 0.97832 0.88088 1.22356 0.89346 0.98882 0.85776 0.89857 1.86591 1.67087 1.30529 1.52373 1.22864 0.87334 1.01773 0.98035 1.61328 1.16974 1.00834 1.46578 1.22410 1.00966 0.94355 0.94054 1.21745 0.92414 0.93235 0.99570 1.20833 0.91716 0.82618 0.82015 1.90464 1.58084 1.48720 1.52802 1.41928 1.07683 1.16506 1.55239 1.19661 0.83874 1.02655 1.39847 0.90649 1.26017 1.04415 0.94848 0.96008 1.69671 1.35987 1.09050 1.41475 0.84891 0.77050 0.78125 0.78383 1.20063 1.19529 1.19368 1.22008 1.04711 0.98988 0.91177 1.23067 0.93412 1.01908 1.04647 1.23046 0.96859 1.03495 0.95695 0.89408 0.92657 0.90242 0.93068 0.88244 0.88645 0.90391 0.86446 0.77950 0.89171 0.91404 0.95173 0.90218 0.92990 0.88172 0.91217 0.77059 0.91294 0.89037 0.88717 0.89548 0.88047 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.42 71.98 0.61 -0.73 16 2 C -0.07 -1.19 2.03 -11.54 -0.02 -1.22 16 3 H 0.10 1.43 7.34 -2.39 -0.02 1.42 16 4 C 0.52 11.49 6.52 87.66 0.57 12.07 16 5 O -0.57 -17.21 13.69 10.49 0.14 -17.07 16 6 N -0.61 -10.66 2.83 -846.76 -2.39 -13.06 16 7 C 0.06 0.61 9.81 127.77 1.25 1.86 16 8 C 0.09 1.53 5.18 86.38 0.45 1.98 16 9 C 0.10 2.32 3.28 30.59 0.10 2.42 16 10 H 0.08 2.14 6.92 -2.39 -0.02 2.12 16 11 O -0.56 -18.39 11.83 -135.46 -1.60 -19.99 16 12 C 0.03 0.65 4.69 86.30 0.40 1.06 16 13 N -0.53 -18.03 4.23 -927.07 -3.92 -21.95 16 14 C 0.03 0.99 9.19 127.69 1.17 2.17 16 15 C 0.06 2.24 5.27 85.56 0.45 2.69 16 16 C 0.44 22.09 7.54 87.66 0.66 22.75 16 17 O -0.61 -35.88 13.88 -3.08 -0.04 -35.92 16 18 N -0.58 -30.64 5.29 -306.98 -1.62 -32.27 16 19 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.39 13.05 21.66 0.28 -50.10 16 23 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.15 -2.80 4.82 -10.79 -0.05 -2.85 16 28 C -0.19 -3.49 10.18 30.60 0.31 -3.18 16 29 C -0.15 -2.02 9.84 30.59 0.30 -1.71 16 30 H 0.09 0.52 7.66 -2.38 -0.02 0.50 16 31 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 32 H 0.08 0.55 5.76 -2.39 -0.01 0.53 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.63 4.36 -2.39 -0.01 0.62 16 35 H 0.09 0.54 7.92 -2.38 -0.02 0.52 16 36 H 0.08 1.47 7.51 -2.39 -0.02 1.45 16 37 H 0.12 1.18 7.91 -2.39 -0.02 1.16 16 38 H 0.37 11.63 8.30 -74.06 -0.61 11.02 16 39 H 0.09 1.84 7.72 -2.39 -0.02 1.82 16 40 H 0.07 1.22 7.99 -2.39 -0.02 1.20 16 41 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 42 H 0.08 2.21 7.82 -2.38 -0.02 2.19 16 43 H 0.05 2.20 6.01 -2.39 -0.01 2.19 16 44 H 0.10 3.33 6.72 -2.39 -0.02 3.31 16 45 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 46 H 0.40 19.83 7.90 -92.70 -0.73 19.10 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 48 H 0.09 2.17 7.36 -2.39 -0.02 2.15 16 49 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 50 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.11 1.03 7.75 -2.39 -0.02 1.01 16 Total: -1.00 -79.79 412.74 -0.05 -79.84 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -0.41 Total: 46.01 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 7.49 Total: 18.44 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -7.65 Total: -117.37 kcal Atomic # 8 Polarization: -71.48 SS G_CDS: -1.50 Total: -72.98 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -79.79 -0.05 -79.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677152377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.384 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds