Wall clock time and date at job start Wed Apr 1 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47285 * 2 1 4 4 C 1.50699 * 109.47445 * 239.99869 * 2 1 3 5 5 O 1.21283 * 120.00336 * 246.04122 * 4 2 1 6 6 N 1.34781 * 119.99971 * 66.03428 * 4 2 1 7 7 C 1.46499 * 119.99826 * 4.99190 * 6 4 2 8 8 C 1.46499 * 120.00107 * 184.98530 * 6 4 2 9 9 C 1.53006 * 109.46709 * 90.00368 * 8 6 4 10 10 H 1.09003 * 109.46723 * 60.00384 * 9 8 6 11 11 O 1.42892 * 109.47229 * 299.99962 * 9 8 6 12 12 C 1.53001 * 109.46524 * 179.97438 * 9 8 6 13 13 N 1.46903 * 109.46476 * 181.08675 * 12 9 8 14 14 C 1.46908 * 110.99629 * 198.92575 * 13 12 9 15 15 C 1.46903 * 111.00015 * 74.97751 * 13 12 9 16 16 C 1.50700 * 109.46973 * 189.99639 * 15 13 12 17 17 O 1.21292 * 120.00130 * 359.97438 * 16 15 13 18 18 N 1.34777 * 119.99867 * 179.97438 * 16 15 13 19 19 C 1.37097 * 120.00046 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00244 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00056 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00058 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99764 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46985 * 60.00084 * 23 21 19 25 25 H 1.48503 * 109.46723 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47201 * 299.99632 * 23 21 19 27 27 C 1.52999 * 109.47377 * 119.99659 * 2 1 3 28 28 C 1.52993 * 117.50146 * 300.00224 * 27 2 1 29 29 C 1.52997 * 60.03415 * 252.49555 * 28 27 2 30 30 H 1.09000 * 109.47078 * 190.23624 * 1 2 3 31 31 H 1.09004 * 109.46989 * 310.23639 * 1 2 3 32 32 H 1.08995 * 109.47052 * 70.23745 * 1 2 3 33 33 H 1.08998 * 109.47204 * 89.07473 * 7 6 4 34 34 H 1.09001 * 109.47489 * 209.07482 * 7 6 4 35 35 H 1.09003 * 109.47278 * 329.07340 * 7 6 4 36 36 H 1.08996 * 109.47171 * 210.00196 * 8 6 4 37 37 H 1.08994 * 109.47161 * 330.00213 * 8 6 4 38 38 H 0.96707 * 114.00224 * 300.00363 * 11 9 8 39 39 H 1.08993 * 109.47490 * 301.08572 * 12 9 8 40 40 H 1.09003 * 109.47339 * 61.09463 * 12 9 8 41 41 H 1.08999 * 109.46882 * 65.09551 * 14 13 12 42 42 H 1.09006 * 109.46913 * 185.08594 * 14 13 12 43 43 H 1.08990 * 109.47403 * 305.08981 * 14 13 12 44 44 H 1.09002 * 109.46646 * 309.99511 * 15 13 12 45 45 H 1.08996 * 109.47257 * 69.99644 * 15 13 12 46 46 H 0.96996 * 120.00014 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00309 * 180.02562 * 22 21 19 48 48 H 1.09007 * 115.55874 * 85.69098 * 27 2 1 49 49 H 1.09006 * 117.50027 * 359.97438 * 28 27 2 50 50 H 1.09003 * 117.50204 * 144.99163 * 28 27 2 51 51 H 1.09001 * 117.50242 * 107.49685 * 29 28 27 52 52 H 1.09000 * 117.50063 * 252.52254 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6367 -1.7564 -1.1225 6 7 1.8101 -0.1834 -2.4508 7 6 1.1774 1.1319 -2.5765 8 6 2.2012 -0.9259 -3.6517 9 6 1.0390 -1.8122 -4.1043 10 1 0.1729 -1.1893 -4.3282 11 8 0.7076 -2.7321 -3.0623 12 6 1.4472 -2.5871 -5.3588 13 7 0.3226 -3.4184 -5.8084 14 6 0.7836 -4.4884 -6.7032 15 6 -0.7113 -2.5998 -6.4557 16 6 -1.9452 -3.4351 -6.6812 17 8 -1.9616 -4.5980 -6.3369 18 7 -3.0306 -2.8899 -7.2653 19 6 -4.1533 -3.6496 -7.4699 20 1 -4.1679 -4.6851 -7.1634 21 6 -5.2721 -3.0876 -8.0727 22 7 -5.2542 -1.8278 -8.4461 23 14 -6.8016 -4.1231 -8.3521 24 1 -7.3082 -4.6197 -7.0475 25 1 -7.8469 -3.2954 -9.0059 26 1 -6.4657 -5.2768 -9.2244 27 6 2.0400 -0.7212 1.2493 28 6 1.6358 -0.1495 2.6096 29 6 3.0745 0.0054 2.1125 30 1 -0.3633 -1.0113 0.1826 31 1 -0.3633 0.6638 0.7845 32 1 -0.3633 0.3475 -0.9671 33 1 1.9443 1.9064 -2.5666 34 1 0.6239 1.1808 -3.5143 35 1 0.4933 1.2873 -1.7423 36 1 2.4539 -0.2242 -4.4465 37 1 3.0672 -1.5486 -3.4278 38 1 1.4333 -3.3196 -2.8108 39 1 1.7183 -1.8852 -6.1473 40 1 2.3015 -3.2245 -5.1302 41 1 1.4261 -5.1731 -6.1497 42 1 -0.0770 -5.0324 -7.0925 43 1 1.3435 -4.0537 -7.5311 44 1 -0.9579 -1.7528 -5.8153 45 1 -0.3394 -2.2352 -7.4132 46 1 -3.0176 -1.9598 -7.5402 47 1 -6.0353 -1.4354 -8.8665 48 1 2.1272 -1.8044 1.1643 49 1 1.0068 0.7408 2.6146 50 1 1.4565 -0.8565 3.4196 51 1 3.3917 0.9973 1.7904 52 1 3.8417 -0.6000 2.5951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677152378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:40 Heat of formation + Delta-G solvation = -105.877979 kcal Electronic energy + Delta-G solvation = -30786.138741 eV Core-core repulsion = 26593.159358 eV Total energy + Delta-G solvation = -4192.979383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32162 -40.42605 -39.05925 -38.07530 -36.94425 -36.20090 -35.77403 -33.30452 -33.27225 -31.30078 -29.56695 -28.20733 -27.35476 -26.61081 -25.57163 -23.96342 -23.12354 -22.41205 -21.60024 -20.93388 -19.94295 -19.85020 -18.28854 -18.00380 -17.59627 -17.03122 -16.81137 -16.70685 -16.49596 -16.13925 -15.92366 -15.62202 -15.41188 -15.21670 -15.09545 -14.95566 -14.56884 -14.27662 -13.99217 -13.78442 -13.64136 -13.44233 -13.33492 -13.05728 -12.89174 -12.86624 -12.75247 -12.63197 -12.55452 -12.42422 -12.42070 -12.24266 -12.12920 -11.87687 -11.79769 -11.45532 -11.25848 -11.16238 -10.88342 -10.56962 -10.25514 -9.99176 -9.50595 -9.10458 -8.45862 -5.94167 1.39409 1.40941 1.51806 1.69112 2.05772 2.06732 2.29026 2.78034 2.92714 3.20660 3.35850 3.54563 3.65866 3.69259 3.79984 4.00966 4.05823 4.12915 4.18187 4.23852 4.29410 4.32380 4.38821 4.40219 4.48691 4.51630 4.54279 4.57711 4.62038 4.65533 4.74735 4.76697 4.78719 4.82015 4.91204 5.01094 5.07255 5.10732 5.16555 5.27146 5.30767 5.41216 5.41651 5.56237 5.89145 6.08632 6.22943 6.44360 6.62173 6.89464 7.14165 7.26591 7.57449 8.14447 8.71412 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002265 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.450298 B =12356.813372 C =13248.324713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 H 0.116 0.884 4 C 0.519 3.481 5 O -0.576 6.576 6 N -0.611 5.611 7 C 0.054 3.946 8 C 0.088 3.912 9 C 0.099 3.901 10 H 0.087 0.913 11 O -0.561 6.561 12 C 0.029 3.971 13 N -0.533 5.533 14 C 0.030 3.970 15 C 0.060 3.940 16 C 0.440 3.560 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.272 1.272 27 C -0.155 4.155 28 C -0.165 4.165 29 C -0.177 4.177 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.373 0.627 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.036 0.964 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.085 0.915 49 H 0.111 0.889 50 H 0.096 0.904 51 H 0.106 0.894 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.652 13.983 13.988 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 H 0.134 0.866 4 C 0.309 3.691 5 O -0.456 6.456 6 N -0.343 5.343 7 C -0.087 4.087 8 C -0.036 4.036 9 C 0.039 3.961 10 H 0.105 0.895 11 O -0.366 6.366 12 C -0.099 4.099 13 N -0.257 5.257 14 C -0.118 4.118 15 C -0.071 4.071 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.174 4.174 28 C -0.202 4.202 29 C -0.214 4.214 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.221 0.779 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.130 0.870 50 H 0.114 0.886 51 H 0.124 0.876 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.030 12.888 14.534 25.833 hybrid contribution -0.029 -0.324 -1.197 1.241 sum 17.002 12.564 13.336 24.995 Atomic orbital electron populations 1.21916 0.91947 1.02595 1.03694 1.20820 0.97690 1.00267 0.90321 0.86580 1.20961 0.77995 0.84807 0.85345 1.90610 1.42787 1.25250 1.86917 1.47741 1.61047 1.20279 1.05191 1.22389 0.98963 0.82414 1.04947 1.22150 0.96958 0.96534 0.87967 1.22346 0.97826 0.89740 0.86228 0.89476 1.86593 1.42697 1.51661 1.55666 1.22839 0.92785 0.96797 0.97505 1.61363 1.11115 1.12585 1.40677 1.22377 1.00006 0.94534 0.94837 1.21737 0.90725 0.95352 0.99308 1.20819 0.85855 0.88652 0.81893 1.90471 1.83994 1.19663 1.55980 1.41914 1.12017 1.13486 1.53818 1.19593 0.91987 0.96081 1.38566 0.90604 1.26006 1.01655 0.97379 0.96178 1.69656 1.32268 1.12851 1.41291 0.85019 0.77070 0.77878 0.78548 1.19931 1.19274 1.19747 1.21986 1.05436 0.98853 0.91146 1.23042 0.97859 1.03496 0.95776 1.23107 0.92765 1.02060 1.03439 0.93989 0.89270 0.90762 0.90440 0.90012 0.88941 0.86730 0.90325 0.77947 0.91389 0.89317 0.90927 0.92968 0.94587 0.87943 0.91244 0.77032 0.91286 0.89651 0.87042 0.88598 0.87560 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.42 71.98 0.61 -1.62 16 2 C -0.07 -1.14 2.06 -11.54 -0.02 -1.17 16 3 H 0.12 1.27 7.56 -2.39 -0.02 1.25 16 4 C 0.52 11.58 6.41 87.66 0.56 12.14 16 5 O -0.58 -17.23 14.32 -1.24 -0.02 -17.25 16 6 N -0.61 -10.72 2.83 -846.75 -2.39 -13.11 16 7 C 0.05 0.56 9.77 127.77 1.25 1.81 16 8 C 0.09 1.51 5.17 86.38 0.45 1.96 16 9 C 0.10 2.29 3.29 30.60 0.10 2.39 16 10 H 0.09 2.14 6.72 -2.39 -0.02 2.13 16 11 O -0.56 -17.43 12.14 -147.18 -1.79 -19.22 16 12 C 0.03 0.66 4.65 86.30 0.40 1.06 16 13 N -0.53 -17.70 4.32 -927.02 -4.01 -21.71 16 14 C 0.03 1.00 9.16 127.69 1.17 2.17 16 15 C 0.06 2.12 5.28 85.56 0.45 2.57 16 16 C 0.44 21.68 7.42 87.66 0.65 22.33 16 17 O -0.62 -35.37 13.96 -3.07 -0.04 -35.41 16 18 N -0.57 -30.10 5.29 -306.98 -1.62 -31.73 16 19 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16 23 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C -0.16 -2.85 4.80 -10.77 -0.05 -2.90 16 28 C -0.16 -2.16 9.84 30.59 0.30 -1.86 16 29 C -0.18 -2.50 10.18 30.62 0.31 -2.18 16 30 H 0.04 0.87 8.11 -2.39 -0.02 0.85 16 31 H 0.09 0.95 7.68 -2.39 -0.02 0.93 16 32 H 0.07 1.09 5.33 -2.39 -0.01 1.08 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.75 8.07 -2.39 -0.02 0.73 16 35 H 0.09 0.83 4.17 -2.39 -0.01 0.82 16 36 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 37 H 0.08 1.54 7.36 -2.39 -0.02 1.52 16 38 H 0.37 10.88 8.62 -74.05 -0.64 10.24 16 39 H 0.07 1.21 8.01 -2.39 -0.02 1.19 16 40 H 0.09 1.83 7.95 -2.39 -0.02 1.81 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 42 H 0.05 2.17 5.79 -2.38 -0.01 2.16 16 43 H 0.04 0.98 8.13 -2.39 -0.02 0.96 16 44 H 0.10 3.27 6.57 -2.39 -0.02 3.25 16 45 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 46 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 48 H 0.09 2.12 7.39 -2.38 -0.02 2.11 16 49 H 0.11 1.07 7.76 -2.38 -0.02 1.05 16 50 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.11 1.17 8.05 -2.39 -0.02 1.15 16 52 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -78.07 413.77 -0.53 -78.61 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: -0.43 Total: 45.71 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.46 Total: 18.02 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -7.74 Total: -116.06 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -1.85 Total: -71.88 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -78.07 -0.53 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677152378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.273 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds