Wall clock time and date at job start Wed Apr 1 2020 01:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46953 * 2 1 4 4 C 1.50705 * 109.47507 * 119.99982 * 2 1 3 5 5 O 1.21288 * 119.99910 * 119.99495 * 4 2 1 6 6 N 1.34769 * 119.99921 * 300.00053 * 4 2 1 7 7 C 1.46501 * 120.00387 * 0.02562 * 6 4 2 8 8 C 1.46505 * 120.00104 * 179.97438 * 6 4 2 9 9 C 1.53002 * 109.46742 * 89.99953 * 8 6 4 10 10 H 1.09001 * 109.47281 * 305.00571 * 9 8 6 11 11 O 1.42903 * 109.46995 * 65.00082 * 9 8 6 12 12 C 1.52996 * 109.47106 * 185.00003 * 9 8 6 13 13 N 1.46902 * 109.46999 * 178.51819 * 12 9 8 14 14 C 1.46903 * 110.99979 * 164.01653 * 13 12 9 15 15 C 1.46893 * 111.00430 * 287.96954 * 13 12 9 16 16 C 1.50697 * 109.47685 * 169.99982 * 15 13 12 17 17 O 1.21298 * 119.99296 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00561 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00140 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99963 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99932 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00379 * 23 21 19 25 25 H 1.48501 * 109.46908 * 210.00256 * 23 21 19 26 26 H 1.48499 * 109.46767 * 330.00177 * 23 21 19 27 27 C 1.52997 * 109.46955 * 240.00073 * 2 1 3 28 28 C 1.53006 * 117.49891 * 128.62075 * 27 2 1 29 29 C 1.53002 * 59.99987 * 252.51017 * 28 27 2 30 30 H 1.09003 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46627 * 299.99559 * 1 2 3 32 32 H 1.08995 * 109.47545 * 60.00165 * 1 2 3 33 33 H 1.08995 * 109.47855 * 89.99650 * 7 6 4 34 34 H 1.09000 * 109.47142 * 210.00219 * 7 6 4 35 35 H 1.09002 * 109.46413 * 329.99655 * 7 6 4 36 36 H 1.08994 * 109.47300 * 209.99895 * 8 6 4 37 37 H 1.08999 * 109.46848 * 330.00899 * 8 6 4 38 38 H 0.96705 * 113.99637 * 60.00084 * 11 9 8 39 39 H 1.08993 * 109.47245 * 298.52004 * 12 9 8 40 40 H 1.09004 * 109.46699 * 58.52442 * 12 9 8 41 41 H 1.08996 * 109.47086 * 65.98812 * 14 13 12 42 42 H 1.09001 * 109.47256 * 185.99152 * 14 13 12 43 43 H 1.09007 * 109.46990 * 305.98484 * 14 13 12 44 44 H 1.08998 * 109.47252 * 290.00379 * 15 13 12 45 45 H 1.09008 * 109.47213 * 49.99788 * 15 13 12 46 46 H 0.96994 * 119.99703 * 359.97438 * 18 16 15 47 47 H 0.96997 * 119.99626 * 179.97438 * 22 21 19 48 48 H 1.09007 * 115.55320 * 274.32824 * 27 2 1 49 49 H 1.08998 * 117.49755 * 359.97438 * 28 27 2 50 50 H 1.08999 * 117.49897 * 145.02232 * 28 27 2 51 51 H 1.09001 * 117.49994 * 252.51085 * 29 28 27 52 52 H 1.09000 * 117.50029 * 107.48729 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6966 1.1191 6 7 1.7069 -0.2500 2.4545 7 6 0.8641 0.9408 2.5891 8 6 2.1948 -0.9409 3.6507 9 6 3.5428 -0.3489 4.0673 10 1 4.2349 -0.3941 3.2264 11 8 3.3632 1.0122 4.4636 12 6 4.1115 -1.1507 5.2397 13 7 5.4220 -0.6044 5.6166 14 6 5.8276 -1.0792 6.9463 15 6 6.4387 -0.9318 4.6081 16 6 7.6993 -0.1579 4.8959 17 8 7.7463 0.5922 5.8480 18 7 8.7745 -0.2992 4.0956 19 6 9.9212 0.4053 4.3572 20 1 9.9630 1.0732 5.2049 21 6 11.0298 0.2592 3.5324 22 7 10.9789 -0.5539 2.5013 23 14 12.5924 1.2185 3.8893 24 1 13.4669 0.4234 4.7884 25 1 13.3077 1.4906 2.6167 26 1 12.2448 2.5040 4.5464 27 6 2.0399 -0.7212 -1.2492 28 6 3.0741 0.0052 -2.1117 29 6 1.6356 -0.1495 -2.6096 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.1837 0.6426 2.6226 34 1 1.1219 1.4664 3.5085 35 1 1.0273 1.5995 1.7360 36 1 1.4769 -0.8153 4.4611 37 1 2.3157 -2.0021 3.4334 38 1 2.7581 1.1282 5.2090 39 1 3.4320 -1.0837 6.0892 40 1 4.2238 -2.1943 4.9455 41 1 5.9945 -2.1558 6.9124 42 1 6.7481 -0.5781 7.2459 43 1 5.0412 -0.8559 7.6673 44 1 6.6526 -2.0000 4.6412 45 1 6.0673 -0.6662 3.6182 46 1 8.7370 -0.8993 3.3345 47 1 11.7527 -0.6556 1.9253 48 1 2.1267 -1.8045 -1.1643 49 1 3.3907 0.9971 -1.7894 50 1 3.8415 -0.6001 -2.5942 51 1 1.4567 -0.8565 -3.4197 52 1 1.0063 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677152379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:45 Heat of formation + Delta-G solvation = -80.970555 kcal Electronic energy + Delta-G solvation = -30848.839689 eV Core-core repulsion = 26656.940373 eV Total energy + Delta-G solvation = -4191.899316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55760 -38.84191 -37.92388 -37.20824 -35.86003 -35.14263 -33.74280 -32.63389 -31.16445 -30.40037 -27.98298 -27.39773 -26.54976 -24.93930 -24.55215 -22.90516 -22.44364 -21.23147 -20.88496 -19.26746 -19.05871 -17.78169 -17.45082 -16.93790 -16.30576 -16.12984 -15.72697 -15.45666 -15.23811 -14.85666 -14.58671 -14.47702 -14.31092 -13.99040 -13.79331 -13.60921 -13.44436 -13.40948 -13.08509 -12.71306 -12.68826 -12.24713 -12.15580 -11.99982 -11.90295 -11.69054 -11.61650 -11.44456 -11.35002 -11.26275 -11.16629 -10.97695 -10.73955 -10.56005 -10.34635 -10.29662 -10.21408 -10.14888 -9.76944 -9.40622 -8.74293 -8.34096 -7.89881 -7.75058 -6.34192 -3.74845 2.47763 2.72341 3.22522 3.30501 3.36897 3.59358 3.96854 4.01288 4.20953 4.26880 4.32709 4.50845 4.63533 4.69879 4.79446 4.82219 4.90090 4.95793 5.06390 5.09959 5.13136 5.15739 5.25729 5.27466 5.33725 5.35924 5.39094 5.45906 5.49135 5.57343 5.62336 5.70147 5.73303 5.80428 5.81326 5.93151 5.96753 6.03765 6.07285 6.09924 6.28436 6.37031 6.58930 7.14184 7.31175 7.43399 7.62058 7.77117 8.01726 8.14099 8.70166 9.25692 9.62850 10.15200 10.83744 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002744 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.559311 B =10202.815930 C =12285.989052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.097 0.903 4 C 0.520 3.480 5 O -0.533 6.533 6 N -0.609 5.609 7 C 0.078 3.922 8 C 0.085 3.915 9 C 0.097 3.903 10 H 0.102 0.898 11 O -0.537 6.537 12 C 0.024 3.976 13 N -0.507 5.507 14 C 0.024 3.976 15 C 0.045 3.955 16 C 0.448 3.552 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.136 4.136 28 C -0.176 4.176 29 C -0.179 4.179 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.364 0.636 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.013 0.987 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.115 0.885 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.875 -1.005 -4.448 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.115 0.885 4 C 0.308 3.692 5 O -0.409 6.409 6 N -0.342 5.342 7 C -0.064 4.064 8 C -0.039 4.039 9 C 0.036 3.964 10 H 0.120 0.880 11 O -0.341 6.341 12 C -0.105 4.105 13 N -0.230 5.230 14 C -0.124 4.124 15 C -0.087 4.087 16 C 0.233 3.767 17 O -0.461 6.461 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.154 4.154 28 C -0.213 4.213 29 C -0.216 4.216 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.210 0.790 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.133 0.867 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.941 -0.450 -4.473 25.343 hybrid contribution 0.513 -0.967 0.017 1.095 sum -24.428 -1.417 -4.456 24.872 Atomic orbital electron populations 1.22011 0.92738 1.03043 1.03190 1.20824 0.97329 1.00035 0.91770 0.88473 1.20601 0.79823 0.84472 0.84330 1.90708 1.37412 1.26484 1.86307 1.47650 1.51573 1.29412 1.05522 1.21987 0.93541 0.87066 1.03846 1.22187 0.96150 0.98401 0.87166 1.22353 0.94935 0.82412 0.96710 0.88042 1.86721 1.69256 1.24593 1.53508 1.22776 0.92756 0.96694 0.98280 1.61485 1.00358 1.58997 1.02186 1.22551 1.03314 0.96974 0.89583 1.21918 0.92756 0.97679 0.96314 1.19692 0.84502 0.86697 0.85801 1.90469 1.83394 1.41201 1.31031 1.41866 1.11186 1.40526 1.26694 1.19688 0.88922 1.21832 1.12205 0.87961 1.25257 0.99595 0.97560 0.95624 1.69623 1.31614 1.37102 1.16047 0.85868 0.81025 0.79857 0.77587 1.20492 1.20961 1.19424 1.22032 1.03765 1.00072 0.89563 1.23035 0.92472 1.02048 1.03706 1.22968 0.98459 1.03133 0.97039 0.92103 0.91053 0.91397 0.92554 0.90345 0.90851 0.90184 0.89028 0.79019 0.90584 0.94097 0.96865 0.88430 0.92439 0.93633 0.89578 0.77522 0.91943 0.86686 0.88740 0.88546 0.88760 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.67 37.16 0.32 -0.64 16 2 C -0.08 -0.71 2.07 -91.77 -0.19 -0.90 16 3 H 0.10 0.81 7.16 -51.93 -0.37 0.44 16 4 C 0.52 6.20 7.08 -10.99 -0.08 6.12 16 5 O -0.53 -8.45 15.23 5.55 0.08 -8.37 16 6 N -0.61 -5.90 2.84 -181.57 -0.52 -6.41 16 7 C 0.08 0.50 8.62 59.85 0.52 1.01 16 8 C 0.08 0.82 5.07 -4.04 -0.02 0.80 16 9 C 0.10 1.21 3.23 -26.73 -0.09 1.13 16 10 H 0.10 1.63 6.55 -51.93 -0.34 1.29 16 11 O -0.54 -6.94 12.06 -35.23 -0.42 -7.37 16 12 C 0.02 0.31 4.63 -3.83 -0.02 0.29 16 13 N -0.51 -8.82 4.35 -244.37 -1.06 -9.88 16 14 C 0.02 0.39 9.18 60.07 0.55 0.94 16 15 C 0.04 0.88 5.30 -4.98 -0.03 0.85 16 16 C 0.45 11.19 7.52 -10.99 -0.08 11.11 16 17 O -0.58 -16.14 13.88 5.54 0.08 -16.06 16 18 N -0.57 -15.11 5.29 -10.96 -0.06 -15.17 16 19 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -25.45 13.05 55.50 0.72 -24.73 16 23 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 C -0.14 -1.35 4.76 -90.62 -0.43 -1.78 16 28 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 29 C -0.18 -1.40 9.73 -26.73 -0.26 -1.66 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.35 4.53 -51.93 -0.24 0.11 16 32 H 0.07 0.35 7.29 -51.93 -0.38 -0.03 16 33 H 0.06 0.25 6.95 -51.93 -0.36 -0.11 16 34 H 0.08 0.47 7.11 -51.93 -0.37 0.10 16 35 H 0.07 0.43 6.01 -51.93 -0.31 0.11 16 36 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 37 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 38 H 0.36 3.18 9.04 45.56 0.41 3.60 16 39 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 40 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 41 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 42 H 0.10 1.99 5.92 -51.93 -0.31 1.68 16 43 H 0.06 0.80 7.96 -51.92 -0.41 0.39 16 44 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 45 H 0.09 1.65 6.38 -51.92 -0.33 1.31 16 46 H 0.39 10.13 7.90 -40.82 -0.32 9.80 16 47 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.12 1.34 7.47 -51.93 -0.39 0.96 16 49 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 50 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.09 0.61 7.61 -51.93 -0.40 0.21 16 LS Contribution 412.23 15.07 6.21 6.21 Total: -1.00 -35.84 412.23 -8.09 -43.92 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -7.78 Total: 14.13 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.32 Total: 7.06 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.91 Total: -56.19 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.26 Total: -31.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.84 -8.09 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677152379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.050 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds