Wall clock time and date at job start Wed Apr 1 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46953 * 2 1 4 4 C 1.50705 * 109.47507 * 119.99982 * 2 1 3 5 5 O 1.21288 * 119.99910 * 119.99495 * 4 2 1 6 6 N 1.34769 * 119.99921 * 300.00053 * 4 2 1 7 7 C 1.46501 * 120.00387 * 0.02562 * 6 4 2 8 8 C 1.46505 * 120.00104 * 179.97438 * 6 4 2 9 9 C 1.53002 * 109.46742 * 89.99953 * 8 6 4 10 10 H 1.09001 * 109.47281 * 305.00571 * 9 8 6 11 11 O 1.42903 * 109.46995 * 65.00082 * 9 8 6 12 12 C 1.52996 * 109.47106 * 185.00003 * 9 8 6 13 13 N 1.46902 * 109.46999 * 178.51819 * 12 9 8 14 14 C 1.46903 * 110.99979 * 164.01653 * 13 12 9 15 15 C 1.46893 * 111.00430 * 287.96954 * 13 12 9 16 16 C 1.50697 * 109.47685 * 169.99982 * 15 13 12 17 17 O 1.21298 * 119.99296 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00561 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00140 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99963 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99932 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00379 * 23 21 19 25 25 H 1.48501 * 109.46908 * 210.00256 * 23 21 19 26 26 H 1.48499 * 109.46767 * 330.00177 * 23 21 19 27 27 C 1.52997 * 109.46955 * 240.00073 * 2 1 3 28 28 C 1.53006 * 117.49891 * 128.62075 * 27 2 1 29 29 C 1.53002 * 59.99987 * 252.51017 * 28 27 2 30 30 H 1.09003 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46627 * 299.99559 * 1 2 3 32 32 H 1.08995 * 109.47545 * 60.00165 * 1 2 3 33 33 H 1.08995 * 109.47855 * 89.99650 * 7 6 4 34 34 H 1.09000 * 109.47142 * 210.00219 * 7 6 4 35 35 H 1.09002 * 109.46413 * 329.99655 * 7 6 4 36 36 H 1.08994 * 109.47300 * 209.99895 * 8 6 4 37 37 H 1.08999 * 109.46848 * 330.00899 * 8 6 4 38 38 H 0.96705 * 113.99637 * 60.00084 * 11 9 8 39 39 H 1.08993 * 109.47245 * 298.52004 * 12 9 8 40 40 H 1.09004 * 109.46699 * 58.52442 * 12 9 8 41 41 H 1.08996 * 109.47086 * 65.98812 * 14 13 12 42 42 H 1.09001 * 109.47256 * 185.99152 * 14 13 12 43 43 H 1.09007 * 109.46990 * 305.98484 * 14 13 12 44 44 H 1.08998 * 109.47252 * 290.00379 * 15 13 12 45 45 H 1.09008 * 109.47213 * 49.99788 * 15 13 12 46 46 H 0.96994 * 119.99703 * 359.97438 * 18 16 15 47 47 H 0.96997 * 119.99626 * 179.97438 * 22 21 19 48 48 H 1.09007 * 115.55320 * 274.32824 * 27 2 1 49 49 H 1.08998 * 117.49755 * 359.97438 * 28 27 2 50 50 H 1.08999 * 117.49897 * 145.02232 * 28 27 2 51 51 H 1.09001 * 117.49994 * 252.51085 * 29 28 27 52 52 H 1.09000 * 117.50029 * 107.48729 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6966 1.1191 6 7 1.7069 -0.2500 2.4545 7 6 0.8641 0.9408 2.5891 8 6 2.1948 -0.9409 3.6507 9 6 3.5428 -0.3489 4.0673 10 1 4.2349 -0.3941 3.2264 11 8 3.3632 1.0122 4.4636 12 6 4.1115 -1.1507 5.2397 13 7 5.4220 -0.6044 5.6166 14 6 5.8276 -1.0792 6.9463 15 6 6.4387 -0.9318 4.6081 16 6 7.6993 -0.1579 4.8959 17 8 7.7463 0.5922 5.8480 18 7 8.7745 -0.2992 4.0956 19 6 9.9212 0.4053 4.3572 20 1 9.9630 1.0732 5.2049 21 6 11.0298 0.2592 3.5324 22 7 10.9789 -0.5539 2.5013 23 14 12.5924 1.2185 3.8893 24 1 13.4669 0.4234 4.7884 25 1 13.3077 1.4906 2.6167 26 1 12.2448 2.5040 4.5464 27 6 2.0399 -0.7212 -1.2492 28 6 3.0741 0.0052 -2.1117 29 6 1.6356 -0.1495 -2.6096 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.1837 0.6426 2.6226 34 1 1.1219 1.4664 3.5085 35 1 1.0273 1.5995 1.7360 36 1 1.4769 -0.8153 4.4611 37 1 2.3157 -2.0021 3.4334 38 1 2.7581 1.1282 5.2090 39 1 3.4320 -1.0837 6.0892 40 1 4.2238 -2.1943 4.9455 41 1 5.9945 -2.1558 6.9124 42 1 6.7481 -0.5781 7.2459 43 1 5.0412 -0.8559 7.6673 44 1 6.6526 -2.0000 4.6412 45 1 6.0673 -0.6662 3.6182 46 1 8.7370 -0.8993 3.3345 47 1 11.7527 -0.6556 1.9253 48 1 2.1267 -1.8045 -1.1643 49 1 3.3907 0.9971 -1.7894 50 1 3.8415 -0.6001 -2.5942 51 1 1.4567 -0.8565 -3.4197 52 1 1.0063 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677152379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:44 Heat of formation + Delta-G solvation = -109.367264 kcal Electronic energy + Delta-G solvation = -30850.071063 eV Core-core repulsion = 26656.940373 eV Total energy + Delta-G solvation = -4193.130690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39240 -40.46886 -39.15103 -38.14453 -37.09539 -36.16395 -35.79022 -33.33606 -33.30643 -31.33671 -29.62829 -28.17377 -27.40560 -26.64269 -25.51588 -24.05754 -23.16043 -22.47780 -21.65571 -20.97905 -20.03654 -19.87596 -18.25028 -18.14579 -17.54836 -17.11489 -16.87455 -16.76622 -16.45243 -16.35255 -15.88661 -15.63625 -15.47185 -15.16364 -15.06885 -15.02777 -14.50724 -14.45116 -13.98472 -13.80368 -13.67857 -13.45348 -13.31191 -13.07596 -12.94451 -12.87774 -12.78174 -12.65838 -12.57480 -12.45017 -12.42596 -12.26738 -12.13946 -11.92703 -11.77715 -11.48507 -11.30283 -11.26103 -10.92360 -10.65066 -10.30131 -10.03207 -9.53463 -9.17428 -8.47968 -5.97603 1.36313 1.39118 1.53149 1.60904 1.99299 2.01486 2.26944 2.73496 2.89128 3.17683 3.32479 3.50335 3.62279 3.64762 3.76997 3.96375 4.00035 4.12086 4.13436 4.19885 4.22532 4.32549 4.36687 4.38691 4.45792 4.47223 4.53126 4.56634 4.62300 4.68943 4.73114 4.76009 4.78219 4.86432 4.95239 5.00429 5.01932 5.08965 5.18224 5.23116 5.31211 5.36238 5.38496 5.54084 5.83702 6.03975 6.19835 6.38118 6.57579 7.01616 7.10208 7.17623 7.52538 8.08252 8.69841 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002744 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.559311 B =10202.815930 C =12285.989052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 H 0.105 0.895 4 C 0.507 3.493 5 O -0.586 6.586 6 N -0.606 5.606 7 C 0.070 3.930 8 C 0.090 3.910 9 C 0.106 3.894 10 H 0.057 0.943 11 O -0.557 6.557 12 C 0.028 3.972 13 N -0.525 5.525 14 C 0.028 3.972 15 C 0.059 3.941 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.081 0.919 21 C -0.016 4.016 22 N -0.924 5.924 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.151 4.151 28 C -0.196 4.196 29 C -0.151 4.151 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.384 0.616 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.393 0.607 47 H 0.278 0.722 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.315 -0.228 -4.142 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.123 0.877 4 C 0.297 3.703 5 O -0.466 6.466 6 N -0.338 5.338 7 C -0.071 4.071 8 C -0.033 4.033 9 C 0.045 3.955 10 H 0.075 0.925 11 O -0.363 6.363 12 C -0.101 4.101 13 N -0.249 5.249 14 C -0.120 4.120 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.565 5.565 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.170 4.170 28 C -0.233 4.233 29 C -0.188 4.188 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.120 0.880 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -27.437 0.337 -4.153 27.751 hybrid contribution 1.222 -1.194 -0.038 1.709 sum -26.215 -0.857 -4.192 26.561 Atomic orbital electron populations 1.22006 0.90244 1.03035 1.04959 1.20849 0.99247 0.99547 0.89811 0.87698 1.21232 0.79199 0.84073 0.85827 1.90677 1.39849 1.28921 1.87159 1.47795 1.51099 1.30005 1.04851 1.22270 0.94380 0.85914 1.04573 1.22140 0.95546 0.97333 0.88318 1.22117 0.95626 0.82607 0.95157 0.92536 1.86678 1.70224 1.24686 1.54729 1.22890 0.90713 0.96708 0.99749 1.61437 1.01402 1.60276 1.01799 1.22452 1.02529 0.97099 0.89919 1.21704 0.90912 0.97374 0.97266 1.20641 0.85509 0.86146 0.84596 1.90442 1.84242 1.42613 1.32205 1.41970 1.11498 1.40771 1.27172 1.19683 0.90664 1.23138 1.12697 0.90137 1.26120 1.02280 0.98134 0.94998 1.69698 1.32760 1.37593 1.16402 0.84882 0.76917 0.78253 0.77989 1.19406 1.19502 1.19622 1.21994 1.04803 0.98859 0.91336 1.23080 0.93543 1.01911 1.04766 1.23057 0.96672 1.03507 0.95538 0.92955 0.89217 0.89683 0.89784 0.89552 0.90278 0.86044 0.90411 0.76709 0.86894 0.93478 0.95659 0.92741 0.89164 0.92161 0.89418 0.77378 0.91306 0.89307 0.88710 0.89649 0.87951 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.67 71.98 0.62 -0.85 16 2 C -0.07 -1.27 2.07 -11.54 -0.02 -1.29 16 3 H 0.11 1.63 7.16 -2.39 -0.02 1.61 16 4 C 0.51 12.15 7.08 87.66 0.62 12.77 16 5 O -0.59 -19.65 15.23 -3.06 -0.05 -19.69 16 6 N -0.61 -10.85 2.84 -846.75 -2.40 -13.25 16 7 C 0.07 0.67 8.62 127.77 1.10 1.77 16 8 C 0.09 1.58 5.07 86.38 0.44 2.01 16 9 C 0.11 2.55 3.23 30.59 0.10 2.65 16 10 H 0.06 1.89 6.55 -2.39 -0.02 1.87 16 11 O -0.56 -13.45 12.06 -148.98 -1.80 -15.25 16 12 C 0.03 0.65 4.63 86.30 0.40 1.05 16 13 N -0.52 -17.89 4.35 -927.06 -4.03 -21.93 16 14 C 0.03 0.90 9.18 127.69 1.17 2.07 16 15 C 0.06 2.35 5.30 85.56 0.45 2.81 16 16 C 0.44 23.00 7.52 87.66 0.66 23.66 16 17 O -0.61 -35.40 13.88 -3.08 -0.04 -35.44 16 18 N -0.58 -32.05 5.29 -306.98 -1.62 -33.68 16 19 C -0.33 -19.87 9.68 84.04 0.81 -19.06 16 20 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.92 -52.56 13.05 21.66 0.28 -52.28 16 23 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C -0.15 -3.06 4.76 -10.79 -0.05 -3.11 16 28 C -0.20 -3.92 10.18 30.60 0.31 -3.61 16 29 C -0.15 -2.17 9.73 30.60 0.30 -1.87 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.56 4.53 -2.39 -0.01 0.55 16 32 H 0.08 0.59 7.29 -2.39 -0.02 0.58 16 33 H 0.08 0.39 6.95 -2.39 -0.02 0.37 16 34 H 0.09 0.73 7.11 -2.39 -0.02 0.71 16 35 H 0.08 0.69 6.01 -2.39 -0.01 0.68 16 36 H 0.12 1.11 8.07 -2.39 -0.02 1.10 16 37 H 0.08 1.62 7.42 -2.39 -0.02 1.60 16 38 H 0.38 5.53 9.04 -74.05 -0.67 4.86 16 39 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 40 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 41 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 42 H 0.05 2.25 5.92 -2.39 -0.01 2.24 16 43 H 0.09 2.28 7.96 -2.38 -0.02 2.26 16 44 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 45 H 0.09 3.49 6.38 -2.38 -0.02 3.47 16 46 H 0.39 21.17 7.90 -92.71 -0.73 20.43 16 47 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.09 2.26 7.47 -2.38 -0.02 2.24 16 49 H 0.09 1.84 8.05 -2.39 -0.02 1.82 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.12 1.16 7.61 -2.39 -0.02 1.14 16 Total: -1.00 -82.53 412.23 -0.71 -83.23 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.46 Total: 43.00 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 7.38 Total: 18.57 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -7.77 Total: -121.13 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -1.89 Total: -70.39 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -82.53 -0.71 -83.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677152379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.134 kcal (2) G-P(sol) polarization free energy of solvation -82.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds