Wall clock time and date at job start Wed Apr 1 2020 01:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00122 * 2 1 4 4 H 1.08994 * 109.47196 * 29.99828 * 3 2 1 5 5 C 1.53000 * 109.46638 * 269.99782 * 3 2 1 6 6 C 1.53002 * 109.47140 * 150.00129 * 3 2 1 7 7 C 1.52993 * 109.46920 * 294.99988 * 6 3 2 8 8 C 1.50699 * 109.47093 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00006 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99855 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.28902 * 327.12949 * 11 10 8 13 13 C 1.54259 * 110.31959 * 89.36689 * 11 10 8 14 14 C 1.54375 * 105.05940 * 118.89793 * 13 11 10 15 15 N 1.48558 * 104.59895 * 23.84993 * 14 13 11 16 16 C 1.46898 * 110.99989 * 200.96688 * 15 14 13 17 17 C 1.50706 * 109.46984 * 285.41304 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31404 * 119.99928 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47292 * 90.00321 * 24 22 20 26 26 H 1.48504 * 109.46709 * 209.99863 * 24 22 20 27 27 H 1.48496 * 109.47395 * 329.99874 * 24 22 20 28 28 C 1.48569 * 104.21736 * 320.51787 * 15 14 13 29 29 H 1.09002 * 110.41107 * 280.58841 * 28 15 14 30 30 C 1.52998 * 110.40935 * 158.26676 * 28 15 14 31 31 H 1.09003 * 109.47117 * 300.00431 * 1 2 3 32 32 H 1.09000 * 109.47067 * 59.99659 * 1 2 3 33 33 H 1.08996 * 109.47492 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47284 * 60.00660 * 5 3 2 35 35 H 1.09003 * 109.46709 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47804 * 299.99718 * 5 3 2 37 37 H 1.08993 * 109.47056 * 174.99529 * 6 3 2 38 38 H 1.09008 * 109.46779 * 54.99682 * 6 3 2 39 39 H 1.08993 * 109.47630 * 59.99893 * 7 6 3 40 40 H 1.08998 * 109.47309 * 299.99491 * 7 6 3 41 41 H 0.96996 * 119.99658 * 359.97438 * 10 8 7 42 42 H 1.09011 * 110.32043 * 237.78758 * 13 11 10 43 43 H 1.08998 * 110.33153 * 359.89363 * 13 11 10 44 44 H 1.09001 * 110.40755 * 265.06376 * 14 13 11 45 45 H 1.09005 * 110.41358 * 142.62964 * 14 13 11 46 46 H 1.09004 * 109.47320 * 165.41709 * 16 15 14 47 47 H 1.09001 * 109.47291 * 45.41005 * 16 15 14 48 48 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 49 49 H 0.96999 * 119.99865 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.47500 * 61.45227 * 30 28 15 51 51 H 1.08995 * 109.46839 * 181.45787 * 30 28 15 52 52 H 1.09005 * 109.46574 * 301.44896 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1383 0.9184 2.1954 8 6 4.4668 0.8761 2.9056 9 8 5.4894 1.0994 2.2929 10 7 4.5185 0.5903 4.2218 11 6 5.8099 0.5498 4.9124 12 1 6.5888 0.1960 4.2369 13 6 6.1677 1.9462 5.4617 14 6 6.2685 1.7618 6.9911 15 7 6.5657 0.3180 7.1754 16 6 6.2099 -0.1239 8.5304 17 6 7.2328 0.3893 9.5109 18 8 8.1666 1.0572 9.1193 19 7 7.1107 0.1055 10.8227 20 6 8.0410 0.5729 11.7148 21 1 8.8742 1.1647 11.3656 22 6 7.9119 0.2851 13.0680 23 7 8.8038 0.7327 13.9229 24 14 6.4704 -0.7381 13.6719 25 1 6.8425 -2.1756 13.6558 26 1 6.1215 -0.3325 15.0572 27 1 5.3013 -0.5194 12.7828 28 6 5.7245 -0.3608 6.1560 29 1 4.6941 -0.4374 6.5033 30 6 6.2847 -1.7491 5.8405 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2568 1.8014 -1.9564 35 1 2.6615 2.7668 -1.4426 36 1 2.8829 1.0774 -1.9564 37 1 3.8428 2.2368 0.6442 38 1 3.9931 0.5050 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5042 1.6765 2.6549 41 1 3.7006 0.4121 4.7118 42 1 7.1235 2.2788 5.0567 43 1 5.3834 2.6621 5.2159 44 1 5.3228 2.0193 7.4681 45 1 7.0771 2.3710 7.3950 46 1 6.1894 -1.2133 8.5637 47 1 5.2267 0.2663 8.7934 48 1 6.3621 -0.4258 11.1363 49 1 8.7135 0.5321 14.8676 50 1 6.2725 -2.3596 6.7433 51 1 5.6719 -2.2224 5.0734 52 1 7.3090 -1.6541 5.4799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689287189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:51 Heat of formation + Delta-G solvation = -116.813467 kcal Electronic energy + Delta-G solvation = -29828.463188 eV Core-core repulsion = 25635.009606 eV Total energy + Delta-G solvation = -4193.453582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.40438 -39.24750 -38.65055 -37.75025 -34.58658 -34.10168 -33.85644 -31.74457 -31.40441 -31.29568 -30.27490 -27.21061 -26.72782 -25.70513 -24.35542 -23.93763 -21.72528 -21.23077 -20.56682 -20.06184 -19.31961 -18.31195 -17.41771 -17.19703 -16.67973 -15.97705 -15.72709 -15.59992 -15.42119 -15.09120 -14.89831 -14.83054 -14.43310 -13.98432 -13.73650 -13.61536 -13.44211 -13.37750 -13.08130 -12.98066 -12.67860 -12.56832 -12.46275 -12.14310 -11.97278 -11.85985 -11.78539 -11.67353 -11.52299 -11.39703 -11.32930 -11.23369 -11.03781 -10.89930 -10.66738 -10.59684 -10.14270 -9.97006 -9.94435 -9.54918 -9.20762 -8.65401 -8.17849 -8.12192 -6.29983 -3.81270 2.45891 2.89437 3.01522 3.06434 3.14580 3.32292 3.75131 3.95858 4.10619 4.29606 4.35068 4.42403 4.58981 4.61400 4.76756 4.81244 4.87648 4.89165 4.91507 5.02069 5.07495 5.17842 5.18620 5.20672 5.25304 5.26797 5.29924 5.41702 5.44857 5.53734 5.58020 5.62525 5.70629 5.72197 5.76426 5.83827 5.88099 5.92700 5.97869 6.10222 6.22508 6.33840 6.36141 6.75256 7.01839 7.06338 7.28890 7.59464 8.04094 8.15758 8.61722 8.96825 9.43740 9.85415 10.83291 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.001752 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.931053 B =15973.590823 C =16474.729264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.538 6.538 10 N -0.725 5.725 11 C 0.145 3.855 12 H 0.103 0.897 13 C -0.132 4.132 14 C 0.037 3.963 15 N -0.476 5.476 16 C 0.032 3.968 17 C 0.455 3.545 18 O -0.556 6.556 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 C 0.052 3.948 29 H 0.053 0.947 30 C -0.136 4.136 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.398 0.602 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.369 0.631 49 H 0.273 0.727 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 -1.941 -25.452 32.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.179 4.179 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.377 5.377 11 C 0.040 3.960 12 H 0.121 0.879 13 C -0.171 4.171 14 C -0.090 4.090 15 N -0.200 5.200 16 C -0.100 4.100 17 C 0.240 3.760 18 O -0.437 6.437 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.058 4.058 29 H 0.071 0.929 30 C -0.194 4.194 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.202 0.798 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.731 -1.595 -25.997 32.081 hybrid contribution -2.721 -0.515 1.277 3.049 sum -21.452 -2.110 -24.720 32.798 Atomic orbital electron populations 1.22782 0.81275 1.02745 0.99865 1.87947 1.19436 1.27879 1.95082 1.22213 0.94861 0.84598 0.95778 0.92116 1.22269 1.02315 1.01969 0.96696 1.21461 0.95603 1.03907 0.92895 1.21649 0.95205 1.04578 0.96488 1.20717 0.91562 0.75963 0.81783 1.90721 1.36304 1.48439 1.65986 1.46186 1.09656 1.72179 1.09690 1.21759 0.85640 0.95400 0.93206 0.87946 1.22739 1.02585 0.96335 0.95456 1.23174 1.00727 0.90217 0.94920 1.65091 1.49547 1.03800 1.01598 1.22107 0.97028 1.01258 0.89571 1.19576 0.88337 0.85554 0.82510 1.90562 1.33958 1.41375 1.77810 1.42202 1.25367 1.49281 1.06479 1.19427 1.05542 1.31241 0.87003 0.86282 1.25025 0.97590 0.97883 0.95674 1.69618 1.34611 1.44943 1.03063 0.86679 0.82289 0.81100 0.79326 1.19624 1.20230 1.19624 1.22879 0.95751 0.95136 0.92004 0.92917 1.21715 1.01968 0.94315 1.01375 0.94054 0.94185 0.89673 0.92539 0.91387 0.91543 0.89752 0.90099 0.88273 0.89255 0.76795 0.90173 0.91210 0.94343 0.88237 0.89150 0.93114 0.79821 0.91656 0.92225 0.92479 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.87 9.88 -35.23 -0.35 -3.22 16 3 C 0.08 0.52 2.72 -26.73 -0.07 0.45 16 4 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 5 C -0.17 -0.99 9.53 37.16 0.35 -0.64 16 6 C -0.10 -0.76 4.21 -26.73 -0.11 -0.87 16 7 C -0.14 -0.95 5.60 -27.89 -0.16 -1.10 16 8 C 0.51 5.20 7.83 -10.98 -0.09 5.11 16 9 O -0.54 -7.68 15.63 5.55 0.09 -7.59 16 10 N -0.73 -6.48 5.02 -52.46 -0.26 -6.75 16 11 C 0.15 1.68 2.96 -66.55 -0.20 1.48 16 12 H 0.10 1.38 7.26 -51.93 -0.38 1.01 16 13 C -0.13 -1.67 6.79 -25.35 -0.17 -1.84 16 14 C 0.04 0.56 5.92 -2.19 -0.01 0.55 16 15 N -0.48 -7.44 4.66 -223.56 -1.04 -8.48 16 16 C 0.03 0.53 5.26 -4.97 -0.03 0.50 16 17 C 0.45 10.28 7.63 -10.98 -0.08 10.20 16 18 O -0.56 -14.89 14.80 5.54 0.08 -14.81 16 19 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 20 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C 0.05 0.60 2.58 -66.07 -0.17 0.43 16 29 H 0.05 0.53 7.61 -51.93 -0.40 0.13 16 30 C -0.14 -1.50 9.34 37.16 0.35 -1.16 16 31 H 0.04 0.15 8.09 -51.93 -0.42 -0.27 16 32 H 0.04 0.16 7.87 -51.93 -0.41 -0.25 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.08 0.75 8.10 -51.92 -0.42 0.33 16 39 H 0.10 0.61 7.82 -51.93 -0.41 0.20 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.40 2.49 8.38 -40.82 -0.34 2.15 16 42 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 44 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 45 H 0.10 1.80 7.24 -51.93 -0.38 1.43 16 46 H 0.09 1.30 7.18 -51.93 -0.37 0.93 16 47 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 48 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 49 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 416.86 15.07 6.28 6.28 Total: -1.00 -35.05 416.86 -7.84 -42.89 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -9.10 Total: 9.61 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.46 Total: 6.64 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.59 Total: -54.38 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.18 Total: -25.62 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.05 -7.84 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689287189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.924 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds