Wall clock time and date at job start Wed Apr 1 2020 01:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00122 * 2 1 4 4 H 1.08994 * 109.47196 * 29.99828 * 3 2 1 5 5 C 1.53000 * 109.46638 * 269.99782 * 3 2 1 6 6 C 1.53002 * 109.47140 * 150.00129 * 3 2 1 7 7 C 1.52993 * 109.46920 * 294.99988 * 6 3 2 8 8 C 1.50699 * 109.47093 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00006 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99855 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.28902 * 327.12949 * 11 10 8 13 13 C 1.54259 * 110.31959 * 89.36689 * 11 10 8 14 14 C 1.54375 * 105.05940 * 118.89793 * 13 11 10 15 15 N 1.48558 * 104.59895 * 23.84993 * 14 13 11 16 16 C 1.46898 * 110.99989 * 200.96688 * 15 14 13 17 17 C 1.50706 * 109.46984 * 285.41304 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31404 * 119.99928 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47292 * 90.00321 * 24 22 20 26 26 H 1.48504 * 109.46709 * 209.99863 * 24 22 20 27 27 H 1.48496 * 109.47395 * 329.99874 * 24 22 20 28 28 C 1.48569 * 104.21736 * 320.51787 * 15 14 13 29 29 H 1.09002 * 110.41107 * 280.58841 * 28 15 14 30 30 C 1.52998 * 110.40935 * 158.26676 * 28 15 14 31 31 H 1.09003 * 109.47117 * 300.00431 * 1 2 3 32 32 H 1.09000 * 109.47067 * 59.99659 * 1 2 3 33 33 H 1.08996 * 109.47492 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47284 * 60.00660 * 5 3 2 35 35 H 1.09003 * 109.46709 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47804 * 299.99718 * 5 3 2 37 37 H 1.08993 * 109.47056 * 174.99529 * 6 3 2 38 38 H 1.09008 * 109.46779 * 54.99682 * 6 3 2 39 39 H 1.08993 * 109.47630 * 59.99893 * 7 6 3 40 40 H 1.08998 * 109.47309 * 299.99491 * 7 6 3 41 41 H 0.96996 * 119.99658 * 359.97438 * 10 8 7 42 42 H 1.09011 * 110.32043 * 237.78758 * 13 11 10 43 43 H 1.08998 * 110.33153 * 359.89363 * 13 11 10 44 44 H 1.09001 * 110.40755 * 265.06376 * 14 13 11 45 45 H 1.09005 * 110.41358 * 142.62964 * 14 13 11 46 46 H 1.09004 * 109.47320 * 165.41709 * 16 15 14 47 47 H 1.09001 * 109.47291 * 45.41005 * 16 15 14 48 48 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 49 49 H 0.96999 * 119.99865 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.47500 * 61.45227 * 30 28 15 51 51 H 1.08995 * 109.46839 * 181.45787 * 30 28 15 52 52 H 1.09005 * 109.46574 * 301.44896 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1383 0.9184 2.1954 8 6 4.4668 0.8761 2.9056 9 8 5.4894 1.0994 2.2929 10 7 4.5185 0.5903 4.2218 11 6 5.8099 0.5498 4.9124 12 1 6.5888 0.1960 4.2369 13 6 6.1677 1.9462 5.4617 14 6 6.2685 1.7618 6.9911 15 7 6.5657 0.3180 7.1754 16 6 6.2099 -0.1239 8.5304 17 6 7.2328 0.3893 9.5109 18 8 8.1666 1.0572 9.1193 19 7 7.1107 0.1055 10.8227 20 6 8.0410 0.5729 11.7148 21 1 8.8742 1.1647 11.3656 22 6 7.9119 0.2851 13.0680 23 7 8.8038 0.7327 13.9229 24 14 6.4704 -0.7381 13.6719 25 1 6.8425 -2.1756 13.6558 26 1 6.1215 -0.3325 15.0572 27 1 5.3013 -0.5194 12.7828 28 6 5.7245 -0.3608 6.1560 29 1 4.6941 -0.4374 6.5033 30 6 6.2847 -1.7491 5.8405 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2568 1.8014 -1.9564 35 1 2.6615 2.7668 -1.4426 36 1 2.8829 1.0774 -1.9564 37 1 3.8428 2.2368 0.6442 38 1 3.9931 0.5050 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5042 1.6765 2.6549 41 1 3.7006 0.4121 4.7118 42 1 7.1235 2.2788 5.0567 43 1 5.3834 2.6621 5.2159 44 1 5.3228 2.0193 7.4681 45 1 7.0771 2.3710 7.3950 46 1 6.1894 -1.2133 8.5637 47 1 5.2267 0.2663 8.7934 48 1 6.3621 -0.4258 11.1363 49 1 8.7135 0.5321 14.8676 50 1 6.2725 -2.3596 6.7433 51 1 5.6719 -2.2224 5.0734 52 1 7.3090 -1.6541 5.4799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689287189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:49 Heat of formation + Delta-G solvation = -145.294629 kcal Electronic energy + Delta-G solvation = -29829.698224 eV Core-core repulsion = 25635.009606 eV Total energy + Delta-G solvation = -4194.688617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35116 -40.43862 -39.47307 -39.01252 -36.04657 -35.38763 -34.66499 -33.74682 -32.48469 -32.24451 -30.96023 -28.27062 -27.52808 -26.63154 -25.70065 -25.01533 -22.58752 -21.94559 -21.53801 -21.25008 -20.89432 -20.15428 -18.10528 -17.78408 -17.76905 -17.50418 -16.70147 -16.57653 -16.27278 -16.20113 -15.90035 -15.84820 -15.55329 -15.26335 -15.06153 -14.61620 -14.50884 -14.33644 -14.20028 -14.00924 -13.84846 -13.62153 -13.36341 -13.17341 -12.99755 -12.87948 -12.80247 -12.46563 -12.42309 -12.39302 -12.33890 -12.19763 -12.07141 -12.02441 -11.96132 -11.68816 -11.51074 -11.47985 -10.87908 -10.49178 -10.42075 -10.22624 -10.06661 -9.38823 -8.39656 -6.00613 1.30433 1.37086 1.45557 1.68451 1.98819 2.09354 2.24505 2.70702 2.91969 3.15486 3.24522 3.41509 3.74035 3.77325 3.84112 4.02834 4.13493 4.14037 4.18800 4.24414 4.32320 4.36203 4.38310 4.43080 4.48246 4.54388 4.56377 4.66298 4.70081 4.74275 4.80969 4.83078 4.89706 4.93902 5.00834 5.02933 5.05265 5.10041 5.12172 5.24559 5.34828 5.36298 5.47009 5.54525 5.86833 5.94340 6.04531 6.35787 6.59198 6.62022 6.90739 7.31457 7.42135 8.00718 8.78229 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.001752 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.931053 B =15973.590823 C =16474.729264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.176 4.176 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.510 3.490 9 O -0.586 6.586 10 N -0.709 5.709 11 C 0.153 3.847 12 H 0.078 0.922 13 C -0.124 4.124 14 C 0.041 3.959 15 N -0.508 5.508 16 C 0.046 3.954 17 C 0.452 3.548 18 O -0.608 6.608 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.229 1.229 28 C 0.060 3.940 29 H 0.088 0.912 30 C -0.135 4.135 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.417 0.583 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.121 0.879 47 H 0.087 0.913 48 H 0.390 0.610 49 H 0.278 0.722 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.205 -3.889 -25.791 36.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.233 4.233 6 C -0.138 4.138 7 C -0.167 4.167 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.362 5.362 11 C 0.047 3.953 12 H 0.096 0.904 13 C -0.164 4.164 14 C -0.087 4.087 15 N -0.233 5.233 16 C -0.086 4.086 17 C 0.239 3.761 18 O -0.492 6.492 19 N -0.235 5.235 20 C -0.457 4.457 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.048 4.048 29 H 0.106 0.894 30 C -0.193 4.193 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.254 0.746 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.139 0.861 47 H 0.105 0.895 48 H 0.225 0.775 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.094 -3.559 -26.352 35.884 hybrid contribution -0.935 0.172 1.289 1.601 sum -25.029 -3.387 -25.063 35.582 Atomic orbital electron populations 1.22942 0.79936 1.03516 1.00812 1.87918 1.20992 1.28490 1.95218 1.22199 0.94324 0.84740 0.95874 0.90122 1.22278 1.02488 1.01942 0.96611 1.21415 0.96075 1.02691 0.93662 1.21642 0.93392 1.06259 0.95448 1.21359 0.92184 0.74719 0.81838 1.90714 1.38265 1.50606 1.67034 1.45991 1.09356 1.71479 1.09399 1.21452 0.86439 0.94422 0.92986 0.90374 1.22642 1.02163 0.97618 0.93928 1.23032 0.99809 0.89718 0.96177 1.64968 1.51917 1.04329 1.02122 1.22013 0.95741 1.02789 0.88036 1.20907 0.88599 0.83653 0.82893 1.90551 1.36554 1.43308 1.78764 1.42012 1.25225 1.49850 1.06406 1.18987 1.05700 1.32249 0.88745 0.92955 1.26133 1.01456 0.98929 0.94963 1.69811 1.37483 1.46671 1.03762 0.85348 0.78335 0.78744 0.78967 1.18188 1.20133 1.15192 1.22904 0.96839 0.94656 0.90397 0.89411 1.21729 1.01125 0.94170 1.02248 0.92672 0.93647 0.89101 0.91705 0.90746 0.92941 0.90412 0.92665 0.86916 0.86286 0.74577 0.92362 0.89539 0.92381 0.92744 0.86086 0.89505 0.77493 0.91214 0.91615 0.90291 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.39 16 2 O -0.41 -5.22 9.88 -148.98 -1.47 -6.70 16 3 C 0.09 0.90 2.72 30.59 0.08 0.98 16 4 H 0.08 0.53 7.79 -2.39 -0.02 0.51 16 5 C -0.18 -1.79 9.53 71.98 0.69 -1.10 16 6 C -0.10 -1.39 4.21 30.59 0.13 -1.26 16 7 C -0.13 -1.37 5.60 29.85 0.17 -1.20 16 8 C 0.51 9.38 7.83 87.66 0.69 10.07 16 9 O -0.59 -16.74 15.63 -3.05 -0.05 -16.79 16 10 N -0.71 -10.52 5.02 -438.29 -2.20 -12.72 16 11 C 0.15 3.30 2.96 45.88 0.14 3.43 16 12 H 0.08 2.12 7.26 -2.39 -0.02 2.10 16 13 C -0.12 -3.08 6.79 31.49 0.21 -2.87 16 14 C 0.04 1.19 5.92 86.45 0.51 1.71 16 15 N -0.51 -15.08 4.66 -861.21 -4.01 -19.09 16 16 C 0.05 1.35 5.26 85.56 0.45 1.80 16 17 C 0.45 20.39 7.63 87.66 0.67 21.06 16 18 O -0.61 -34.24 14.80 -3.08 -0.05 -34.28 16 19 N -0.59 -27.78 5.09 -306.97 -1.56 -29.34 16 20 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.94 -56.76 13.96 21.66 0.30 -56.45 16 24 Si 0.97 38.36 27.74 68.60 1.90 40.26 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 28 C 0.06 1.22 2.58 45.06 0.12 1.33 16 29 H 0.09 1.23 7.61 -2.39 -0.02 1.21 16 30 C -0.14 -2.61 9.34 71.98 0.67 -1.94 16 31 H 0.05 0.22 8.09 -2.39 -0.02 0.20 16 32 H 0.04 0.26 7.87 -2.39 -0.02 0.24 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.54 7.87 -2.38 -0.02 0.52 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 39 H 0.11 0.97 7.82 -2.39 -0.02 0.96 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.42 3.21 8.38 -92.71 -0.78 2.43 16 42 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.09 1.83 7.95 -2.39 -0.02 1.81 16 44 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 45 H 0.05 2.09 7.24 -2.38 -0.02 2.07 16 46 H 0.12 2.91 7.18 -2.39 -0.02 2.89 16 47 H 0.09 2.02 7.77 -2.39 -0.02 2.00 16 48 H 0.39 14.88 5.76 -92.71 -0.53 14.34 16 49 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.06 1.20 7.31 -2.39 -0.02 1.18 16 51 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.05 1.10 8.12 -2.38 -0.02 1.08 16 Total: -1.00 -85.48 416.86 -0.52 -86.00 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.45 Total: 34.60 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.07 Total: 14.52 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -7.47 Total: -117.61 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.57 Total: -57.76 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -85.48 -0.52 -86.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689287189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.290 kcal (2) G-P(sol) polarization free energy of solvation -85.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds